mRNA_P-wetherbeei_contig8431.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8431.1.1
Unique NamemRNA_P-wetherbeei_contig8431.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8431.1.1 vs. uniprot
Match: A0A6H5K3G8_9PHAE (Rhodanese domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G8_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.470e-25
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  434 ITVRSEDEFSHGHPAGAINLPGFVMSAAGMQWNDNFVPEV-EKRMSKDARILVSCQMGGRSAMAQQVLEDAGFTNVVNIAGGYGAWAQDNSLPVE 715
            + VR++ EF HGHPAGA+N+P F  +A GM  N +FV ++ EK   K A++++ CQMG RSA A   LE+AG++ +VN+ GG+ AWA+D+SLPVE
Sbjct:   73 VDVRADYEFEHGHPAGAVNVPAFFSTAQGMTVNPDFVDQIAEKFPDKAAKLVIGCQMGSRSAQAAGWLENAGYSGIVNMEGGFSAWARDDSLPVE 167          
BLAST of mRNA_P-wetherbeei_contig8431.1.1 vs. uniprot
Match: D7G7C7_ECTSI (Putative Ntdin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C7_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 8.800e-25
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  434 ITVRSEDEFSHGHPAGAINLPGFVMSAAGMQWNDNFVPEV-EKRMSKDARILVSCQMGGRSAMAQQVLEDAGFTNVVNIAGGYGAWAQDNSLPVE 715
            + VR++ EF HG PAGA+N+P F  +A GM  N +FV ++ EK   K A++++ CQMG RSA A   LE+AG++ VVN+ GG+ AWA+D+SLPVE
Sbjct:   22 VDVRADYEFEHGRPAGAVNVPAFFSTAQGMTVNPDFVDQIAEKFPDKAAKLVIGCQMGSRSAQAAGWLENAGYSGVVNMEGGFSAWARDDSLPVE 116          
BLAST of mRNA_P-wetherbeei_contig8431.1.1 vs. uniprot
Match: A0A836CLH4_9STRA (Rhodanese-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLH4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.500e-24
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 2
Query:  422 SILPITVRSEDEFSHGHPAGAINLPGFVMSAAGMQWNDNFVPEVEKRMSKDARILVSCQMGGRSAMAQQVLEDAGFTNVVNIAGGYGAWAQDNSLPVER 718
            S+  + VR+++EFS GHP G+ N+P F     GM  N  FV +VE+   K+  ++V CQ G RS  A  +LE AG++N++N+ GGYGAWA+D +LPV R
Sbjct:   64 SVPYVDVRTQEEFSQGHPEGSANIPAFFPGPTGMAPNSEFVSQVEQTYPKEEPLIVGCQAGPRSTKAVSMLEAAGYSNLMNVEGGYGAWARDENLPVSR 162          
BLAST of mRNA_P-wetherbeei_contig8431.1.1 vs. uniprot
Match: A0A833R5G3_9POAL (Thiosulfate sulfurtransferase 16 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R5G3_9POAL)

HSP 1 Score: 97.8 bits (242), Expect = 6.280e-21
Identity = 48/95 (50.53%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  434 ITVRSEDEFSHGHPAGAINLPGFVMSAAGMQWNDNFVPEVEKRMSKDARILVSCQMGGRSAMAQQVLEDAGFTNVVNIAGGYGAWAQDNSLPVER 718
            + VR+EDEF  GHPAGAIN+P      +G+  N  F+ +V    S+D  I+V CQ G RS MA   L  AGF  VV++AGGY AW Q N LP+ER
Sbjct:   90 LDVRTEDEFKAGHPAGAINIPYMFKVGSGLSKNPKFLEQVSSVFSQDNEIIVGCQSGKRSLMAATELHSAGFRAVVDLAGGYSAWVQ-NELPIER 183          
BLAST of mRNA_P-wetherbeei_contig8431.1.1 vs. uniprot
Match: A0A835IQ75_9MAGN (Rhodanese domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IQ75_9MAGN)

HSP 1 Score: 95.5 bits (236), Expect = 4.270e-20
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 2
Query:  368 VDEPRFLRYLPTSSVILLSILPITVRSEDEFSHGHPAGAINLPGFVMSAAGMQWNDNFVPEVEKRMSKDARILVSCQMGGRSAMAQQVLEDAGFTNVVNIAGGYGAWAQDNSLPVE 715
            ++ PR +       ++      + VR+ +EFS GHP GA+N+P    +  GM  N NF+ EV +   KD  I+V CQ G RS MA   L  AGF+ V +IAGGY AW Q   LP+E
Sbjct:   68 IEVPRSVPVRVAHELLQAGHRYLDVRTAEEFSAGHPLGAVNIPYMFKAGQGMTKNPNFLEEVSEHFGKDTEIIVGCQSGKRSLMAATDLSSAGFSGVTDIAGGYSAWRQ-TGLPME 182          
BLAST of mRNA_P-wetherbeei_contig8431.1.1 vs. uniprot
Match: A0A803MAU7_CHEQI (Rhodanese domain-containing protein n=3 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MAU7_CHEQI)

HSP 1 Score: 94.0 bits (232), Expect = 2.090e-19
Identity = 51/129 (39.53%), Postives = 72/129 (55.81%), Query Frame = 2
Query:  332 GSDCTIAIPCAPVDEP-RFLRYLPTSSVILLSILPITVRSEDEFSHGHPAGAINLPGFVMSAAGMQWNDNFVPEVEKRMSKDARILVSCQMGGRSAMAQQVLEDAGFTNVVNIAGGYGAWAQDNSLPVE 715
            G+   + +   P   P R  R L     +L     + VR+ +EF+ GH  GA+N+P  +   +GM  N NF+ +V  + SKD  ILV CQ G RS MA   L+ AG+T +++IAGGY AW Q + LP E
Sbjct:   66 GTTSNVEVTAIPTSVPVRVAREL-----LLAGHSYLDVRTPEEFTAGHVPGAVNIPYMLRIGSGMTKNPNFLEQVLSQFSKDDEILVGCQSGKRSLMAANDLQSAGYTGIIDIAGGYSAWTQ-SELPTE 188          
BLAST of mRNA_P-wetherbeei_contig8431.1.1 vs. uniprot
Match: A0A6P6TJ55_COFAR (thiosulfate sulfurtransferase 16, chloroplastic-like n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6TJ55_COFAR)

HSP 1 Score: 92.8 bits (229), Expect = 5.370e-19
Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  434 ITVRSEDEFSHGHPAGAINLPGFVMSAAGMQWNDNFVPEVEKRMSKDARILVSCQMGGRSAMAQQVLEDAGFTNVVNIAGGYGAWAQDNSLPVE 715
            + VR+ +EFS GH AGA+N+P      +GM  N NFV EV     KD  I+V CQ+G RS MA   L  AGFT + +IAGGY AW Q N LP E
Sbjct:   98 LDVRTAEEFSAGHAAGAVNVPYMFRVGSGMTKNLNFVDEVLAIFGKDDEIIVGCQLGKRSLMAATDLISAGFTGITDIAGGYAAWVQ-NELPTE 190          
BLAST of mRNA_P-wetherbeei_contig8431.1.1 vs. uniprot
Match: UPI000D6298CD (thiosulfate sulfurtransferase 16, chloroplastic-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D6298CD)

HSP 1 Score: 92.8 bits (229), Expect = 5.750e-19
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  434 ITVRSEDEFSHGHPAGAINLPGFVMSAAGMQWNDNFVPEVEKRMSKDARILVSCQMGGRSAMAQQVLEDAGFTNVVNIAGGYGAWAQDNSLPVE 715
            + VR+ +EFS GH  GAIN+P      +GM  N +FV EV     KD  I+V CQ+G RS MA   L  AGFT V++IAGGY AW + N LP+E
Sbjct:  101 LDVRTPEEFSAGHAVGAINIPYMFRLGSGMTKNPDFVEEVLSHFGKDDEIIVGCQLGKRSLMAAMDLLSAGFTGVMDIAGGYAAWNK-NGLPIE 193          
BLAST of mRNA_P-wetherbeei_contig8431.1.1 vs. uniprot
Match: A0A2T7DTY7_9POAL (Rhodanese domain-containing protein n=6 Tax=Panicum TaxID=4539 RepID=A0A2T7DTY7_9POAL)

HSP 1 Score: 92.0 bits (227), Expect = 1.010e-18
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  434 ITVRSEDEFSHGHPAGAINLPGFVMSAAGMQWNDNFVPEVEKRMSKDARILVSCQMGGRSAMAQQVLEDAGFTNVVNIAGGYGAWAQDNSLPVER 718
            + VR+E EFS GHP GA+N+P    + +GM  N +F+ +V +  SKD  I+V CQ G RS MA   L  AGFT V +IAGG+ +W +DN LP+ +
Sbjct:   97 LDVRTEGEFSAGHPEGAVNVPYMNKTGSGMTKNTHFLEQVSRIFSKDDEIIVGCQSGKRSLMAAAELCSAGFTAVTDIAGGFSSW-RDNGLPITQ 190          
BLAST of mRNA_P-wetherbeei_contig8431.1.1 vs. uniprot
Match: A0A2P6RLI0_ROSCH (Putative thiosulfate sulfurtransferase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RLI0_ROSCH)

HSP 1 Score: 91.7 bits (226), Expect = 1.110e-18
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  434 ITVRSEDEFSHGHPAGAINLPGFVMSAAGMQWNDNFVPEVEKRMSKDARILVSCQMGGRSAMAQQVLEDAGFTNVVNIAGGYGAWAQDNSLPVE 715
            + VR+ +EFS GHP+GA+N+P      +GM  N  FV EV     K   I+V CQ+G RS MA   L  AGF+ + +IAGGY AW Q N LP E
Sbjct:   87 LDVRTPEEFSAGHPSGAVNIPYLYKVGSGMSKNPEFVKEVSSHFRKHDEIIVGCQLGKRSMMAAADLVAAGFSGITDIAGGYAAWTQ-NRLPTE 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8431.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3G8_9PHAE3.470e-2551.58Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
D7G7C7_ECTSI8.800e-2551.58Putative Ntdin n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A836CLH4_9STRA8.500e-2446.46Rhodanese-like domain-containing protein n=1 Tax=T... [more]
A0A833R5G3_9POAL6.280e-2150.53Thiosulfate sulfurtransferase 16 n=1 Tax=Carex lit... [more]
A0A835IQ75_9MAGN4.270e-2041.38Rhodanese domain-containing protein n=1 Tax=Coptis... [more]
A0A803MAU7_CHEQI2.090e-1939.53Rhodanese domain-containing protein n=3 Tax=Chenop... [more]
A0A6P6TJ55_COFAR5.370e-1951.06thiosulfate sulfurtransferase 16, chloroplastic-li... [more]
UPI000D6298CD5.750e-1950.00thiosulfate sulfurtransferase 16, chloroplastic-li... [more]
A0A2T7DTY7_9POAL1.010e-1847.37Rhodanese domain-containing protein n=6 Tax=Panicu... [more]
A0A2P6RLI0_ROSCH1.110e-1847.87Putative thiosulfate sulfurtransferase n=1 Tax=Ros... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8431contigP-wetherbeei_contig8431:661..1870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7C7
PFAMsRhodanese
Model size944
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004792,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0007568,GO:0008150,GO:0009507,GO:0009536,GO:0009611,GO:0009719,GO:0009725,GO:0009753,GO:0010033,GO:0016740,GO:0016782,GO:0016783,GO:0032502,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:1901700
Exons2
Evalue1.82e-16
EggNOG OGsCOG0607@1|root,KOG1530@2759|Eukaryota
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-04_003300.1
Descriptionthiosulfate sulfurtransferase activity
Cds size216
COG categoryP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187039.912871-UTR-P-wetherbeei_contig8431:660..8831683187039.912871-UTR-P-wetherbeei_contig8431:660..883Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8431 661..883 -
1683187039.9384258-UTR-P-wetherbeei_contig8431:1365..18701683187039.9384258-UTR-P-wetherbeei_contig8431:1365..1870Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8431 1366..1870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187039.9222748-CDS-P-wetherbeei_contig8431:883..9291683187039.9222748-CDS-P-wetherbeei_contig8431:883..929Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8431 884..929 -
1683187039.9303045-CDS-P-wetherbeei_contig8431:1195..13651683187039.9303045-CDS-P-wetherbeei_contig8431:1195..1365Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8431 1196..1365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8431.1.1prot_P-wetherbeei_contig8431.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8431 884..1365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8431.1.1

>prot_P-wetherbeei_contig8431.1.1 ID=prot_P-wetherbeei_contig8431.1.1|Name=mRNA_P-wetherbeei_contig8431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MSAAGMQWNDNFVPEVEKRMSKDARILVSCQMGGRSAMAQQVLEDAGFTN
VVNIAGGYGAWAQDNSLPVER*
back to top

mRNA from alignment at P-wetherbeei_contig8431:661..1870-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8431.1.1 ID=mRNA_P-wetherbeei_contig8431.1.1|Name=mRNA_P-wetherbeei_contig8431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1210bp|location=Sequence derived from alignment at P-wetherbeei_contig8431:661..1870- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAGGATGGCCGCGGGCGATGCCGTCGTGCCACAAGTTGCGTACAG GCTTATGACTGATACGGAACCGTACGTTATCATCGACGGTAAGCCGCGGC GGAGAGGCACCGTTTTCCTTCTTCGATGTTATCGGCAGCTGATTAGTGCT TGCCACCACAAGCCGCCTTACCACGACTGGAGGGAACCGAGACGTCGTCG AATACGTCCACTCAAAGTGCATGGCGGTTTGTCACCTCCAGCTCATCCGC TGCCGCAAAGAGCCTCCTCTCTGACATCGGGAGCAAAAAGAGTCTGCCCT CACTTCTCTTTAAAGCTTCAGAAACTGACAAGGCAGCGATTGTACGATAG CGATTCCCTGTGCTCCCGTCGATGAACCGCGTTTTTTGCGGTATCTTCCC ACATCTTCCGTTATTCTTCTTTCGATTCTTCCTATTACAGTCCGGTCAGA GGACGAGTTTTCGCACGGGCACCCCGCGGGCGCCATCAACCTACCGGGGT TCGTCATGTCGGCGGCCGGAATGCAGTGGAACGACAATTTTGTCCCCGAG GTGGAAAAGCGGATGTCGAAGGATGCCAGGATCCTCGTCAGCTGCCAGAT GGGCGGCCGGAGCGCCATGGCCCAGCAAGTGCTCGAGGATGCCGGCTTCA CTAATGTCGTGAACATTGCCGGCGGGTGAGTCGGGCGACCTTGGTTAGTT CAATATGTTTAGTGTCGCTACGGCGGAATCACAGCGACTAGCGAATTTAC TCCTGTCTAATCCTCCGGTCGATGGTAGATGGAAAACTATTGAGGCTCCG CTGGCCCACTCTCTTACCAGCGCATTGCTGTCTGATTTATGGTCGTTTTT GCATCCTTCTCATTGGACGTAAGAACGAACGGCTCTTTTTGTGCCTTTCC TCTTTGCCATCATCCGGAATCTCTCGGCCAATCAAAACCAGCTACGGCGC GTGGGCGCAGGACAACAGCCTGCCGGTGGAGAGGTAATGTTGCGGCCAGA ATCACTTCGCTGTTTTGTCGCAATGGAGAGGCTAATAGAGCAATTGTTTG GAATTGCATGAGTGCAGCGGCGCAGCAGCAGTAACCACCGACGTTTGAGG GGCTTTACAACGCAGGGATGCTTTTTATCCGAGTCACAGGATGGGGAGAA AATAGGTGTAGGCCGCCTCGCGCAGCGGTTGTCAAGGAATAATAAACAAA CTATCTCCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8431:661..1870-

>mRNA_P-wetherbeei_contig8431.1.1 ID=mRNA_P-wetherbeei_contig8431.1.1|Name=mRNA_P-wetherbeei_contig8431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig8431:661..1870- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCGGCCGGAATGCAGTGGAACGACAATTTTGTCCCCGAGGTGGA
AAAGCGGATGTCGAAGGATGCCAGGATCCTCGTCAGCTGCCAGATGGGCG
GCCGGAGCGCCATGGCCCAGCAAGTGCTCGAGGATGCCGGCTTCACTAAT
GTCGTGAACATTGCCGGCGGCTACGGCGCGTGGGCGCAGGACAACAGCCT
GCCGGTGGAGAGGTAA
back to top