mRNA_P-wetherbeei_contig8421.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig8421.1.1 vs. uniprot
Match: D7FLN0_ECTSI (Holocytochrome c-type synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN0_ECTSI) HSP 1 Score: 295 bits (756), Expect = 3.980e-94 Identity = 160/261 (61.30%), Postives = 180/261 (68.97%), Query Frame = 1
Query: 52 AKADGCPVKHDGESGLSLRPYLNPRAYNVYGQRID------PTNQMPANPNNQPAPGQAAPLSTDRVTSNIPKGGSEGTWTYPSPQMFWNAMVRKGKGEGATEGDMDVVVAIHNNMNENTWRRILQWETLDCGEGGASGDDGRAPRLLRFLGRPHDLSPKAWLKTRLLGCPDPFDRHDWVVDRGGDEIRYVIDYYHDESLAPLDETPTSLADTERVRSIALDVRPALDSPAAAYRRFVAMPLARALGRSDFAPLPLLRPSP 816
A CPVK + S ++ YL+P YNVY QRID PTN MPANPN QPAPGQ PLST RV S IPKGG E TWTYPSPQMFWNA+ RKGK + EGDMD+VV+IHNNMNE TW +IL+WE L G SG DG PRLLRFLGRP+D +PKA K +LG P PFDRHDWVVDRGGDE RYVIDYY+D+ + P A+ V+SI +DVRPALDS RFV MP AR GRS+F PL L RPSP
Sbjct: 93 APTSSCPVKEENRSKVAK--YLHPHKYNVYSQRIDTRDGLDPTNNMPANPNQQPAPGQEKPLSTARVPSTIPKGGEETTWTYPSPQMFWNALSRKGKADNTEEGDMDIVVSIHNNMNELTWTKILEWEKLRSR--GGSGVDGAEPRLLRFLGRPNDTAPKALAKM-MLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPGLHAEGA-VKSIKVDVRPALDSFRDLADRFVQMPFARLTGRSEFVPLSL-RPSP 346
BLAST of mRNA_P-wetherbeei_contig8421.1.1 vs. uniprot
Match: W7TSP8_9STRA (Holocytochrome c-type synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSP8_9STRA) HSP 1 Score: 293 bits (749), Expect = 4.750e-94 Identity = 154/268 (57.46%), Postives = 178/268 (66.42%), Query Frame = 1
Query: 64 GCPVKHDGESGLSLRPYLNPR-----------------AYNVYGQRIDPTNQMPANPNNQPAPGQAAPLSTDRVTSNIPKGGSEG-TWTYPSPQMFWNAMVRKGKGEGATEGDMDVVVAIHNNMNENTWRRILQWETLDCGE----GGASGDDGRAPRLLRFLGRPHDLSPKAWLKTRLLGCPDPFDRHDWVVDR-GGDEIRYVIDYYHDESLAPLDETPTSLADTERVRSIALDVRPALDSPAAAYRRFVAMPLARALGRSDFAPLP 798
GCPVK +S +S P P YNVY Q IDPTNQMPAN NN+PAPGQ PLSTDRV S IPKGG+E TWTYPSPQMFWNA+VRKGK EGA E DMDVVVAIHNNMNENTWR++L+WE L+ A D+ PRL RFLGRP +LSPKAW K+ L G P PFDRHDWV+ R G E+RYVIDYYHD++ A ++ P L D V+SI++DVRPALDS A R + MP+ G + F PLP
Sbjct: 32 GCPVKSRNKSPISESPLPPPSDSSXXXXXSKAGSEGLTVYNVYAQPIDPTNQMPANANNKPAPGQITPLSTDRVVSRIPKGGTEAETWTYPSPQMFWNALVRKGKAEGANEEDMDVVVAIHNNMNENTWRKVLEWEALNSSSPLQMDPAHSDEANTPRLSRFLGRPDELSPKAWFKS-LFGHPLPFDRHDWVIQRQDGTEVRYVIDYYHDDAAAKENQVPKDLVDANSVKSISVDVRPALDSVHAFVDRGMRMPINLVAGSTHFQPLP 298
BLAST of mRNA_P-wetherbeei_contig8421.1.1 vs. uniprot
Match: A0A812PZ14_SYMMI (Holocytochrome c-type synthase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PZ14_SYMMI) HSP 1 Score: 286 bits (733), Expect = 1.650e-92 Identity = 145/256 (56.64%), Postives = 175/256 (68.36%), Query Frame = 1
Query: 49 PAKADGCPVKHDGESG-LSLRPYLNPRAYNVYGQRIDPTNQMPANPNNQPAPGQAAPLSTDRVTSNIPKGGSEG-TWTYPSPQMFWNAMVRKGKGEGATEGDMDVVVAIHNNMNENTWRRILQWETLDCGEGGASGDDGRAPRLLRFLGRPHDLSPKAWLKTRLLGCPDPFDRHDWVVDRGGDEIRYVIDYYHDESLAPLDETPTSLADTERVRSIALDVRPALDSPAAAYRRFVAMPLARALGRSDFAPLPLLRP 810
P + CPVK + NP YNVY Q+I+PTNQMP P AP Q+ LS DRV+SNIPKGG++ TWTYPSPQMFWNA+VRKGK EGA+E DMD VV+IHNNMNENTWR+++ WE L +G GR P+LLRF+G+P DLSPKA+LKT L G P PFDRHDW+VDRGG+E+RYVIDYYHDES D P L D ++SI +DVRPALDS + R + MP A+ G + + P P L P
Sbjct: 16 PQDVNECPVKAKSQQAEXXXXXXKNPNVYNVYSQKINPTNQMPDQPMQTAAPSQSQDLSVDRVSSNIPKGGTDADTWTYPSPQMFWNALVRKGKMEGASENDMDTVVSIHNNMNENTWRQVMAWEGLHLVKG-----PGREPKLLRFMGKPDDLSPKAYLKT-LFGHPAPFDRHDWIVDRGGEEVRYVIDYYHDESKVTHDTVPKQLRDAHAMQSIVVDVRPALDSVGSVVSRLMLMPWAQMRGITHYNPPPFLPP 265
BLAST of mRNA_P-wetherbeei_contig8421.1.1 vs. uniprot
Match: A0A7S3Y2G6_HETAK (Holocytochrome c-type synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2G6_HETAK) HSP 1 Score: 286 bits (733), Expect = 2.470e-91 Identity = 153/274 (55.84%), Postives = 187/274 (68.25%), Query Frame = 1
Query: 1 CPVEHGSAAPSSGSQTPAKADGCPVKHD-GESG----LSLRPYLNPRAYNVYGQRIDPTNQMPANPNNQPAPGQAAPLSTDRVTSNIPKGGSEGTWTYPSPQMFWNAMVRKGK-GEGATEGDMDVVVAIHNNMNENTWRRILQWETLDCGEGGASGDDGRAPRLLRFLGRPHDLSPKAWLKTRLLGCPDPFDRHDWVVDRGGDEIRYVIDYYHDESLAPLDETPTSLADTERVRSIALDVRPALDSPAAAYRRFVAMPLARALGRSDFAPLPLL 804
CPV+H + + + + CPVK + SG ++ + Y NP YNVY Q+IDPTN MPA P+ + GQ PLST+RV SNIPKGG++ TW YPSPQMF+N++ RK K GE A E D VVVAIHNNMNENTW ++L+WE L E +G G P LLRFLGRPHDLSPKA + RLLG P+PFDRHDWVVDRGG E+RYVIDYYHDE+L+ D+TP L D + V+SI +DVRPALDS +A RF MP R G + F P+ L
Sbjct: 66 CPVDH-----ERNNNSDSDSSKCPVKDEKARSGFVNSMAKQKYTNPNVYNVYSQKIDPTNNMPAKPDQEMVEGQQIPLSTERVQSNIPKGGTDSTWLYPSPQMFYNSLARKNKLGEMAPE-DAGVVVAIHNNMNENTWGKVLEWERLHESE--YAGRAGAEPHLLRFLGRPHDLSPKAMFR-RLLGFPEPFDRHDWVVDRGGKEVRYVIDYYHDEALSEQDKTP-GLTDKDSVKSILVDVRPALDSVESAVDRFFMMPYQRRFGTNSFTPMDYL 329
BLAST of mRNA_P-wetherbeei_contig8421.1.1 vs. uniprot
Match: A0A7S1XL53_9STRA (Holocytochrome c-type synthase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL53_9STRA) HSP 1 Score: 281 bits (719), Expect = 9.550e-90 Identity = 144/242 (59.50%), Postives = 174/242 (71.90%), Query Frame = 1
Query: 67 CPVKHDGESGLSLRPYLNPRAYNVYGQRIDPTNQMPANPNNQPAPGQAAPLSTDRVTSNIPKGGSEGTWTYPSPQMFWNAMVRKGKGEGATEGDMDVVVAIHNNMNENTWRRILQWETLDCGEGGASGDDGRAPRLLRFLGRPHDLSPKAWLKTRLLGCPDPFDRHDWVVDRGGDEIRYVIDYYHDESLAPLDETPTSLADTERVRSIALDVRPALDSPAAAYRRFVAMPLARALGRSDFAP 792
CPVK+ SG+ L Y N YNVY Q+IDP N MPANPN +PAPGQ LST RV+SNIPKGG++ TWTYPSPQMF+NA+VRKGK +E DM++VVAIHNNMNE TW +++ WE + + + + G APRLLRFLGRP + SP A LK L G P PFDRHDWVVDRGG E+RY+IDYYHD S A DE P +L D V+SI L+VRPALDSP A R++ MPLA G++ + P
Sbjct: 50 CPVKN--ASGM-LAKYRNTNVYNVYSQKIDPKNNMPANPNQKPAPGQEKALSTHRVSSNIPKGGTDSTWTYPSPQMFYNAIVRKGKKGSTSEDDMEMVVAIHNNMNERTWNQVMAWEAMH--QDADAEEKGTAPRLLRFLGRPDEFSPLARLKM-LFGHPAPFDRHDWVVDRGGQEVRYIIDYYHDVSRAHEDEKP-ALRDESSVKSIVLEVRPALDSPEAFLDRYLRMPLALLQGQTSYQP 284
BLAST of mRNA_P-wetherbeei_contig8421.1.1 vs. uniprot
Match: A0A7S2RHY1_9STRA (Holocytochrome c-type synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHY1_9STRA) HSP 1 Score: 269 bits (688), Expect = 6.330e-85 Identity = 137/249 (55.02%), Postives = 166/249 (66.67%), Query Frame = 1
Query: 67 CPVKHDGESGLSLRPYLNPRAYNVYGQRIDPTNQMPANPNNQPAPGQAAPLSTDRVTSNIPKGGSEG-TWTYPSPQMFWNAMVRKGKGEGATEGDMDVVVAIHNNMNENTWRRILQWETLDCGEGGASGDDGRAPRLLRFLGRPHDLSPKAWLKTRLLGCPDPFDRHDWVVDRGGDEIRYVIDYYHDESLAPLDETPTSLADTERVRSIALDVRPALDSPAAAYRRFVAMPLARALGRSDFAPLPLLRP 810
CPV HD + + Y NP+ +NVY Q ++P N MPA P A GQ PL+T+RV S IPKGG++ TW YPSPQMFWNA+VRKGK G +E DMD+VVAIHNNMNE TW ++L WE L +G P+LLRF GRP + SPKA LK + GCP+PFDRHDWVVDRGG E+RY+IDYYH+E D+ P L D + +RSI +DVRPALDS A R MP A GR+ F+ LPL P
Sbjct: 57 CPVSHD-----TRKRYRNPKMFNVYSQELNPDNNMPAKPVQTRAAGQEVPLTTERVKSTIPKGGTDAATWEYPSPQMFWNAIVRKGKKGGTSEQDMDMVVAIHNNMNETTWHQVLAWEALHPVP---EDMEGAEPKLLRFTGRPDENSPKAHLKRLIFGCPEPFDRHDWVVDRGGKEVRYIIDYYHNELGVDQDKVP-GLKDQDTIRSIRIDVRPALDSIDAVADRIFRMPFAMLQGRAGFSYLPLASP 296
BLAST of mRNA_P-wetherbeei_contig8421.1.1 vs. uniprot
Match: A0A0H5R9A0_9EUKA (Holocytochrome c-type synthase (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R9A0_9EUKA) HSP 1 Score: 266 bits (679), Expect = 4.860e-84 Identity = 138/247 (55.87%), Postives = 167/247 (67.61%), Query Frame = 1
Query: 1 CPVEHGSAAPSSGSQTPAKADGCPVKHDGESG------LSLRPYLNPRAYNVYGQRIDPTNQMPANPNNQPAPGQAAPLSTDRVTSNIPKGGSEGTWTYPSPQMFWNAMVRKGKGEGATEGDMDVVVAIHNNMNENTWRRILQWETL-DCGEGGASGDDGRAPRLLRFLGRPHDLSPKAWLKTRLLGCPDPFDRHDWVVDRGGDEIRYVIDYYHDESLAPLDETPTSLADTERVRSIALDVRPALDS 720
CPV+HG SS S+ GESG + Y +P YNVY +RIDP NQM ANPN +PAPGQ PLST RVTS+IPKGG++GTWTYPSPQMF+NA+ RKGK +E D+D VVAIHNNMNE TWR++LQWE+ C P LLRF+G+P+ L+PKAW+K++ LG PFDRHDW+VDR G E+RYVIDYYHDES D+ P L DT ++SI +DVRPALDS
Sbjct: 40 CPVDHGGGNKSSASK------------QGESGGXXXXXXTNSKYKHPHVYNVYSERIDPNNQMSANPNQEPAPGQKEPLSTHRVTSSIPKGGTDGTWTYPSPQMFYNALARKGKVSDVSERDVDTVVAIHNNMNERTWRQLLQWESCKSCPN----------PTLLRFMGKPNHLTPKAWIKSK-LGYGTPFDRHDWIVDRCGQEVRYVIDYYHDESGVADDKVP-GLHDTSSIKSIKVDVRPALDS 262
BLAST of mRNA_P-wetherbeei_contig8421.1.1 vs. uniprot
Match: A0A7S3HQN3_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQN3_9STRA) HSP 1 Score: 257 bits (657), Expect = 2.820e-80 Identity = 128/234 (54.70%), Postives = 156/234 (66.67%), Query Frame = 1
Query: 112 YLNPRAYNVYGQRIDPTNQMPANPNNQPAPGQAAPLSTDRVTSNIPKGGSEG-TWTYPSPQMFWNAMVRKGKGEGATEGDMDVVVAIHNNMNENTWRRILQWETLDCGEGGASGDDGRAPRLLRFLGRPHDLSPKAWLKTRLLGCPDPFDRHDWVVDRGGDEIRYVIDYYHDESLAPLDETPTSLADTERVRSIALDVRPALDSPAAAYRRFVAMPLARALGRSDFAPLPLLRP 810
Y NP +NVY +IDPTNQMPAN N QP+ DRV S+IPKGG+E TWTYPSPQMFWNA+VRK K EG E DM+ V+AIHNNMNENTW+++++WE L A GR +LL+F GRP +LSPKA LK L G P PFDRHDW VDRGG +RY+IDYYHDES D+ P + D ++SI +DVRPALD P++ R V MP + G + + P P P
Sbjct: 75 YKNPSVFNVYSTKIDPTNQMPANANQQPSAXXXXXXXVDRVPSSIPKGGTEQETWTYPSPQMFWNALVRKDKTEGVLEQDMETVIAIHNNMNENTWQQVVEWEKLVNDP--AKAAPGRESKLLKFCGRPDELSPKARLKV-LFGHPAPFDRHDWTVDRGGKMVRYIIDYYHDESAVQQDKKPRHMTDAASMQSIKVDVRPALDDPSSILARLVLMPWRQFQGSTKYNPPPFFAP 305
BLAST of mRNA_P-wetherbeei_contig8421.1.1 vs. uniprot
Match: A0A7S0STW0_9STRA (Holocytochrome c-type synthase (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STW0_9STRA) HSP 1 Score: 254 bits (649), Expect = 2.140e-79 Identity = 131/245 (53.47%), Postives = 162/245 (66.12%), Query Frame = 1
Query: 73 VKHDGESGLSLRPYLNPRAYNVYGQRIDPTNQMPANPNNQPAPGQAAPLSTDRVTSNIPKGGSEG-TWTYPSPQMFWNAMVRKGKGEGATEGDMDVVVAIHNNMNENTWRRILQWETLDCGE--GGASGDDGRAPRLLRFLGRPHDLSPKAWLKTRLLGCPDPFDRHDWVVDRGGDEIRYVIDYYHDESLAPLDETPTSLADTERVRSIALDVRPALDSPAAAYRRFVAMPLARALGRSDFAPLP 798
++ + ++ S P YNVYGQ+IDPTN MP+ N APGQ PLST+RV S IPKGG++ TW YPSPQMFWNA+VRK K EGA E MD VVAIHNNMNENTW++IL+WE + + G S D P+LL+F GRP +LSPKA +K L G PFDRHDW+VDR G +IRYVIDYYHDE D+ P +L DT ++SI +DVRPALD R V MP+ + + + P P
Sbjct: 68 IESNNKNDSSKCPVKKRDVYNVYGQKIDPTNNMPSVANQLKAPGQKIPLSTERVPSQIPKGGTDNDTWVYPSPQMFWNALVRKNKVEGAAEEYMDTVVAIHNNMNENTWKQILEWENIYSVKIRGDTSSD---LPKLLKFTGRPDELSPKAKIKM-LFGHSPPFDRHDWIVDRNGKQIRYVIDYYHDEDAVTSDQKPKTLTDTNSIKSIKVDVRPALDGLEGLISRLVFMPIRQLTSSTSYNPPP 308
BLAST of mRNA_P-wetherbeei_contig8421.1.1 vs. uniprot
Match: A0A0G4IUD4_PLABS (Holocytochrome c-type synthase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUD4_PLABS) HSP 1 Score: 254 bits (649), Expect = 4.010e-79 Identity = 129/221 (58.37%), Postives = 158/221 (71.49%), Query Frame = 1
Query: 61 DGCPVKHDGESGLSLRPYLNPRAYNVYGQRIDPTNQMPANPNNQPAPGQAAPLSTDRVTSNIPKGGSEGTWTYPSPQMFWNAMVRKGKGEGATEGDMDVVVAIHNNMNENTWRRILQWETL-DCGEGGASGDDGRAPRLLRFLGRPHDLSPKAWLKTRLLGCPDPFDRHDWVVDRGGDEIRYVIDYYHDESLAPLDETPTSLADTERVRSIALDVRPALDS 720
DGCPV H SG Y +P YNVY +RIDPTNQM ANPN +P PGQ PLST RV S+IPKGG++ TW+YPSPQMF+NA+ RKGK +G +E D++ +VAIHNNMNE TW+++LQWE+ C + P LLRF+GRP+ L+PKA++K+ LG PFDRHDW+VDR G E+RYVIDYYHDE D+ P SL DT V SI +D RPALDS
Sbjct: 90 DGCPVAHG--SG-----YRHPHVYNVYNERIDPTNQMAANPNQKPGPGQTQPLSTHRVQSSIPKGGTDSTWSYPSPQMFYNALNRKGKLDGVSETDVNAIVAIHNNMNERTWQQVLQWESCKSCPD----------PTLLRFMGRPNQLTPKAYIKS-WLGYGLPFDRHDWIVDRCGQEVRYVIDYYHDEQGVEHDQLP-SLRDTTSVASIKVDARPALDS 291 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8421.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig8421.1.1 >prot_P-wetherbeei_contig8421.1.1 ID=prot_P-wetherbeei_contig8421.1.1|Name=mRNA_P-wetherbeei_contig8421.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp CPVEHGSAAPSSGSQTPAKADGCPVKHDGESGLSLRPYLNPRAYNVYGQRback to top mRNA from alignment at P-wetherbeei_contig8421:73..1704- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig8421.1.1 ID=mRNA_P-wetherbeei_contig8421.1.1|Name=mRNA_P-wetherbeei_contig8421.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1632bp|location=Sequence derived from alignment at P-wetherbeei_contig8421:73..1704- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig8421:73..1704- >mRNA_P-wetherbeei_contig8421.1.1 ID=mRNA_P-wetherbeei_contig8421.1.1|Name=mRNA_P-wetherbeei_contig8421.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig8421:73..1704- (Phaeothamnion wetherbeei SAG_119_79)back to top |