mRNA_P-wetherbeei_contig842.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig842.2.1
Unique NamemRNA_P-wetherbeei_contig842.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig842.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig842contigP-wetherbeei_contig842:3509..4607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1099
Hectar predicted targeting categoryother localisation
Exons1
Cds size663
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187039.2932847-UTR-P-wetherbeei_contig842:3508..38611683187039.2932847-UTR-P-wetherbeei_contig842:3508..3861Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig842 3509..3861 +
1683187039.3124852-UTR-P-wetherbeei_contig842:4524..46071683187039.3124852-UTR-P-wetherbeei_contig842:4524..4607Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig842 4525..4607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187039.3028967-CDS-P-wetherbeei_contig842:3861..45241683187039.3028967-CDS-P-wetherbeei_contig842:3861..4524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig842 3862..4524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig842.2.1prot_P-wetherbeei_contig842.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig842 3862..4524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig842.2.1

>prot_P-wetherbeei_contig842.2.1 ID=prot_P-wetherbeei_contig842.2.1|Name=mRNA_P-wetherbeei_contig842.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=221bp
MVNGFHSCGSADCQLWQGDRSLRSLLAIELPTRSKAGVYIEAVMANCPQR
APSCGLAPGGVPSGAENGQEGGVARLAVRRDSAVGNRAAAFVAPLFSVSL
AAADDQSGGGCQGQSRGAVTLKRCTERNSDSDGGCESGMRQILAAHSGAG
GEHDAGGEHDTIASTHIAGDDAASSAGGGGSGGGGGRGGKTVHSEKGRSH
AEPSGRLSRALPAARGGREN*
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mRNA from alignment at P-wetherbeei_contig842:3509..4607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig842.2.1 ID=mRNA_P-wetherbeei_contig842.2.1|Name=mRNA_P-wetherbeei_contig842.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1099bp|location=Sequence derived from alignment at P-wetherbeei_contig842:3509..4607+ (Phaeothamnion wetherbeei SAG_119_79)
AGTTGGCTGCGCGGCGCAGCCGCTGGTCCTTGAAAGACCTCGAGCTGACA
CCGTAGCTGCAGGATACTGCTGTTACTGCTGTTGGACTGGCGGCACCCTT
GGGAACCGCCGCCACTTTTTTCTGCAGTCCACCAAGTCGCTGCTGGCATT
ATGTGCCGGCGTCGCCTAGAGCCAGGCCGGCCGCATCGCTGTCGCCGCAG
TCACAGAAAATTGTATCATTGCGTCGAGGGCGGCCGGCGGCGGTCGGGAC
GGCGGGCGGTGCCGCGGGCGGAGCCCACGAAAAATAGATTGCGAAGGAAC
ATGCGAAGGAACATCTGAGTAAAAGCGAGAATTGGTTTCGTGTTGGGTTT
AAAATGGTGAACGGCTTCCACTCCTGCGGTTCTGCCGACTGTCAACTTTG
GCAGGGTGATCGCAGTCTACGTTCCCTTTTGGCGATCGAGCTGCCGACAC
GGAGCAAAGCTGGCGTTTACATCGAAGCGGTCATGGCAAACTGTCCTCAA
CGCGCGCCCTCCTGTGGTCTGGCGCCAGGGGGCGTACCGTCGGGGGCAGA
AAATGGCCAAGAGGGGGGCGTGGCGCGACTCGCGGTTCGCAGGGACAGCG
CCGTGGGAAACCGTGCTGCCGCTTTCGTAGCCCCTCTTTTTTCTGTTTCT
CTTGCCGCTGCGGACGATCAGAGTGGGGGTGGCTGCCAAGGGCAGTCGCG
GGGGGCAGTTACCTTAAAGCGCTGCACTGAGAGAAACAGCGATAGCGATG
GAGGCTGTGAAAGCGGCATGCGGCAAATCCTGGCTGCCCACTCCGGCGCT
GGCGGCGAGCACGACGCTGGCGGCGAGCACGACACCATCGCCTCCACCCA
TATCGCCGGCGATGACGCCGCCAGTAGCGCCGGCGGCGGCGGCAGCGGGG
GCGGCGGCGGCCGCGGCGGCAAAACTGTCCATTCGGAAAAGGGGAGGAGC
CACGCAGAGCCGTCTGGCCGTTTGTCGAGGGCACTTCCAGCCGCGCGGGG
AGGGAGGGAAAATTGATTGCAGCAGTTATGGCGACTGCGGCCAAAAAAAG
GGAAATTCTGCTCCGGTTCGGCAGTGCGAATCGGGATGCCTTCAGAAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig842:3509..4607+

>mRNA_P-wetherbeei_contig842.2.1 ID=mRNA_P-wetherbeei_contig842.2.1|Name=mRNA_P-wetherbeei_contig842.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=663bp|location=Sequence derived from alignment at P-wetherbeei_contig842:3509..4607+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAACGGCTTCCACTCCTGCGGTTCTGCCGACTGTCAACTTTGGCA
GGGTGATCGCAGTCTACGTTCCCTTTTGGCGATCGAGCTGCCGACACGGA
GCAAAGCTGGCGTTTACATCGAAGCGGTCATGGCAAACTGTCCTCAACGC
GCGCCCTCCTGTGGTCTGGCGCCAGGGGGCGTACCGTCGGGGGCAGAAAA
TGGCCAAGAGGGGGGCGTGGCGCGACTCGCGGTTCGCAGGGACAGCGCCG
TGGGAAACCGTGCTGCCGCTTTCGTAGCCCCTCTTTTTTCTGTTTCTCTT
GCCGCTGCGGACGATCAGAGTGGGGGTGGCTGCCAAGGGCAGTCGCGGGG
GGCAGTTACCTTAAAGCGCTGCACTGAGAGAAACAGCGATAGCGATGGAG
GCTGTGAAAGCGGCATGCGGCAAATCCTGGCTGCCCACTCCGGCGCTGGC
GGCGAGCACGACGCTGGCGGCGAGCACGACACCATCGCCTCCACCCATAT
CGCCGGCGATGACGCCGCCAGTAGCGCCGGCGGCGGCGGCAGCGGGGGCG
GCGGCGGCCGCGGCGGCAAAACTGTCCATTCGGAAAAGGGGAGGAGCCAC
GCAGAGCCGTCTGGCCGTTTGTCGAGGGCACTTCCAGCCGCGCGGGGAGG
GAGGGAAAATTGA
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