mRNA_P-wetherbeei_contig8417.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8417.2.1
Unique NamemRNA_P-wetherbeei_contig8417.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8417.2.1 vs. uniprot
Match: D7FHF9_ECTSI (U2 small nuclear ribonucleoprotein auxiliary factor large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.490e-12
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 EETREECQQFGEVLRVLVPKASAAADPSQAPGVGFVFAEFGTAAAAAVALASLQGRAFDGRKVDAVYWDEAAF 219
            EET+EEC++FG V  V +P+ S  ++ ++ PGVG+VF  F    +A+ A ASL+ R FDGRKV+  YWDE  F
Sbjct:  205 EETKEECEKFGSVKSVHIPRPSTTSE-AEKPGVGYVFVAFDAVDSASKAAASLRARTFDGRKVEVTYWDEDKF 276          
BLAST of mRNA_P-wetherbeei_contig8417.2.1 vs. uniprot
Match: A0A7S4I336_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I336_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.860e-11
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 EETREECQQFGEVLRVLVPKASAAADPSQAPGVGFVFAEFGTAAAAAVALASLQGRAFDGRKVDAVYWDEAAFA 222
            E+T EEC QFG + RV++P++         PG   +F E+ T   AA A+ASL GR FDGRKV AVY+DEA FA
Sbjct:  360 EDTTEECGQFGSLKRVVIPRSG--------PGATKIFLEYATKEDAARAIASLAGRTFDGRKVTAVYYDEARFA 425          
BLAST of mRNA_P-wetherbeei_contig8417.2.1 vs. uniprot
Match: A0A1E7FB45_9STRA (UAF-1 protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB45_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.400e-11
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 EETREECQQFGEVLRVLVPKASAAADPSQAPGVGFVFAEFGTAAAAAVALASLQGRAFDGRKVDAVYWDEAAFA 222
            E+T+EEC Q+G++L V +PKA         PGV  +F E+ +   ++ A+  LQGR FDGR+V A ++DEA FA
Sbjct:   34 EDTKEECGQYGQLLNVFIPKAGE-------PGVTKIFLEYASTDDSSKAITGLQGRTFDGRRVQATFFDEAKFA 100          
BLAST of mRNA_P-wetherbeei_contig8417.2.1 vs. uniprot
Match: A0A7S4RBM4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBM4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.150e-9
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 EETREECQQFGEVLRVLVPKASAAADPSQAPGVGFVFAEFGTAAAAAVALASLQGRAFDGRKVDAVYWDEAAFA 222
            E+T+EEC QFG +  +++P+          PG   +F E+ +   AA A+  L GR FDGRKV+A+++DE  FA
Sbjct:   69 EDTKEECSQFGSLKNLVIPR--------DGPGATKIFLEYMSTDDAAAAIKGLAGRTFDGRKVEAIFYDETKFA 134          
BLAST of mRNA_P-wetherbeei_contig8417.2.1 vs. uniprot
Match: A0A7S1VGS1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VGS1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.020e-8
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 EETREECQQFGEVLRVLVPKASAAADPSQAPGVGFVFAEFGTAAAAAVALASLQGRAFDGRKVDAVYWDEAAF 219
            E+TREEC QFG +  V++P++  A       G   +F E+ ++  AA A+ +L GR FDGRKV+A Y+DE  +
Sbjct:   44 EDTREECSQFGALREVIIPRSGEA-------GATKIFLEYVSSDDAAKAIQALAGRTFDGRKVEAAYFDEGRY 109          
BLAST of mRNA_P-wetherbeei_contig8417.2.1 vs. uniprot
Match: A0A1Z5KDF2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDF2_FISSO)

HSP 1 Score: 58.2 bits (139), Expect = 3.640e-8
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    1 EETREECQQFGEVLRVLVPKASAAADPSQAPGVGFVFAEFGTAAAAAVALASLQGRAFDGRKVDAVYWDEAAFA 222
            ++TREEC +FG +L+V++P+           G   +F E+G+A  A  A+  L+GR FDGR V+A ++DEA FA
Sbjct:  276 QDTREECSKFGNLLQVMIPRKGEV-------GATQIFLEYGSADEANAAILGLRGRTFDGRLVEATFFDEAKFA 342          
BLAST of mRNA_P-wetherbeei_contig8417.2.1 vs. uniprot
Match: A0A7S4RDP7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RDP7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.230e-8
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 EETREECQQFGEVLRVLVPKASAAADPSQAPGVGFVFAEFGTAAAAAVALASLQGRAFDGRKVDAVYWDEAAFA 222
            E+T+EEC QFG +  +++P+          PG   +F E+ +   AA A+  L GR FDGRKV+A+++DE  FA
Sbjct:  366 EDTKEECSQFGSLKNLVIPR--------DGPGATKIFLEYMSTDDAAAAIKGLAGRTFDGRKVEAIFYDETKFA 431          
BLAST of mRNA_P-wetherbeei_contig8417.2.1 vs. uniprot
Match: B7FT80_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FT80_PHATC)

HSP 1 Score: 54.7 bits (130), Expect = 7.100e-8
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 EETREECQQFGEVLRVLVPKASAAADPSQAPGVGFVFAEFGTAAAAAVALASLQGRAFDGRKVDAVYWDEAAF 219
            E+TREEC QFG+++ V++PK           G G +F E+ T   AA A+ +L+GR FDGR+V A    EA F
Sbjct:   38 EDTREECSQFGKLISVVIPKKGET-------GEGKIFLEYETTNDAAQAIQALEGRTFDGRRVQATSCAEAKF 103          
BLAST of mRNA_P-wetherbeei_contig8417.2.1 vs. uniprot
Match: A0A7S2HGX3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HGX3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.590e-8
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 EETREECQQFGEVLRVLVPKASAAADPSQAPGVGFVFAEFGTAAAAAVALASLQGRAFDGRKVDAVYWDEAAFA 222
            E+T+EEC QFG +  +++P+          PG   +F E+ +   AA A+  L GR FDGRKV+AV++DE  FA
Sbjct:  304 EDTKEECSQFGSLKNLVIPR--------DGPGATKIFLEYLSTDDAAKAIQGLAGRTFDGRKVEAVFYDETKFA 369          
BLAST of mRNA_P-wetherbeei_contig8417.2.1 vs. uniprot
Match: A0A448YVH2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVH2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.820e-7
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 EETREECQQFGEVLRVLVPKASAAADPSQAPGVGFVFAEFGTAAAAAVALASLQGRAFDGRKVDAVYWDEAAF 219
            E+T +EC+Q+G++L V +PK          PG   VF E+ +   A+ A+ SL+GR FDG++V+A ++DE  F
Sbjct:  337 EDTEQECKQYGQLLNVYIPKKGE-------PGATKVFLEYASTEDASKAIKSLEGRTFDGQRVEATFFDETKF 402          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8417.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHF9_ECTSI1.490e-1249.32U2 small nuclear ribonucleoprotein auxiliary facto... [more]
A0A7S4I336_9STRA2.860e-1151.35Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1E7FB45_9STRA4.400e-1144.59UAF-1 protein n=1 Tax=Fragilariopsis cylindrus CCM... [more]
A0A7S4RBM4_9STRA8.150e-940.54Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1VGS1_9STRA2.020e-842.47Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1Z5KDF2_FISSO3.640e-841.89Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S4RDP7_9STRA5.230e-840.54Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B7FT80_PHATC7.100e-843.84Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2HGX3_9STRA9.590e-841.89Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A448YVH2_9STRA1.820e-739.73Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8417contigP-wetherbeei_contig8417:2496..2717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHF9
PFAMsHA2,Helicase_C,OB_NTP_bind,RRM_1,S1
Model size222
Max annot lvl2759|Eukaryota
KEGG koko:K12818,ko:K12837,ko:K16487
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.44e-13
EggNOG OGsKOG0120@1|root,KOG0120@2759|Eukaryota
EC3.6.4.13
Descriptionpre-mRNA 3'-splice site binding
Cds size222
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187039.1858273-CDS-P-wetherbeei_contig8417:2495..27171683187039.1858273-CDS-P-wetherbeei_contig8417:2495..2717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8417 2496..2717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8417.2.1prot_P-wetherbeei_contig8417.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8417 2496..2717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8417.2.1

>prot_P-wetherbeei_contig8417.2.1 ID=prot_P-wetherbeei_contig8417.2.1|Name=mRNA_P-wetherbeei_contig8417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
EETREECQQFGEVLRVLVPKASAAADPSQAPGVGFVFAEFGTAAAAAVAL
ASLQGRAFDGRKVDAVYWDEAAFA
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mRNA from alignment at P-wetherbeei_contig8417:2496..2717-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8417.2.1 ID=mRNA_P-wetherbeei_contig8417.2.1|Name=mRNA_P-wetherbeei_contig8417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig8417:2496..2717- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGACGCGGGAGGAGTGCCAGCAGTTCGGGGAGGTGCTGCGTGTGCT GGTGCCCAAGGCATCAGCGGCGGCGGACCCAAGCCAGGCCCCGGGCGTCG GCTTCGTGTTTGCCGAGTTTGGCACGGCGGCGGCGGCGGCGGTGGCGCTG GCCAGCCTGCAAGGCCGCGCCTTCGACGGCCGCAAGGTTGACGCGGTCTA CTGGGACGAGGCGGCGTTCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8417:2496..2717-

>mRNA_P-wetherbeei_contig8417.2.1 ID=mRNA_P-wetherbeei_contig8417.2.1|Name=mRNA_P-wetherbeei_contig8417.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig8417:2496..2717- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGACGCGGGAGGAGTGCCAGCAGTTCGGGGAGGTGCTGCGTGTGCT
GGTGCCCAAGGCATCAGCGGCGGCGGACCCAAGCCAGGCCCCGGGCGTCG
GCTTCGTGTTTGCCGAGTTTGGCACGGCGGCGGCGGCGGCGGTGGCGCTG
GCCAGCCTGCAAGGCCGCGCCTTCGACGGCCGCAAGGTTGACGCGGTCTA
CTGGGACGAGGCGGCGTTCGCG
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