mRNA_P-wetherbeei_contig8412.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8412.1.1
Unique NamemRNA_P-wetherbeei_contig8412.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8412.1.1 vs. uniprot
Match: A0A835Z5B4_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.210e-22
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:   13 LATSLVVPLSKRAGLSPILGFLATGMALGPNGLSVVCDVKATEVLGELGIVFFLFEMGLELS 198
            +A +LV+PL KRAG SPILGFLATG  LGPNGL ++ DVKATEVLGELGIVFFLFEMGLELS
Sbjct:    1 MAVALVIPLCKRAGQSPILGFLATGTLLGPNGLRLIADVKATEVLGELGIVFFLFEMGLELS 62
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BLAST of mRNA_P-wetherbeei_contig8412.1.1 vs. uniprot
Match: A0A6H5KT04_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT04_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.230e-22
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 LILLLATSLVVPLSKRAGLSPILGFLATGMALGPNGLSVVCDVKATEVLGELGIVFFLFEMGLELS 198
            L++L+A +L++P+ KR GLSP+LGFLA G+ALGPN LS+V DVKA EVLGE+GIVFFLFEMGLELS
Sbjct:  344 LVILMANALIIPVCKRVGLSPVLGFLAAGVALGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELS 409
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BLAST of mRNA_P-wetherbeei_contig8412.1.1 vs. uniprot
Match: D8LS49_ECTSI (Similarity to sodium/hydrogen exchanger and potassium exchanger n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS49_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.320e-22
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 LILLLATSLVVPLSKRAGLSPILGFLATGMALGPNGLSVVCDVKATEVLGELGIVFFLFEMGLELS 198
            L++L+A +L++P+ KR GLSP+LGFLA G+ALGPN LS+V DVKA EVLGE+GIVFFLFEMGLELS
Sbjct:  312 LVILMANALIIPVCKRVGLSPVLGFLAAGVALGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELS 377
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BLAST of mRNA_P-wetherbeei_contig8412.1.1 vs. uniprot
Match: A0A4D9D2S5_9STRA (Na_H_Exchanger domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2S5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.580e-21
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 LILLLATSLVVPLSKRAGLSPILGFLATGMALGPNGLSVVCDVKATEVLGELGIVFFLFEMGLELS 198
            L+LLL+T+LVVP+  R   SPILGFL TGM LGP GLSVV D+K TE L ELGIVFFLFEMGLELS
Sbjct:   52 LVLLLSTTLVVPIMTRLKTSPILGFLLTGMVLGPRGLSVVNDIKTTEALAELGIVFFLFEMGLELS 117
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BLAST of mRNA_P-wetherbeei_contig8412.1.1 vs. uniprot
Match: F0XZB6_AURAN (Na_H_Exchanger domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZB6_AURAN)

HSP 1 Score: 87.4 bits (215), Expect = 2.170e-21
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 LILLLATSLVVPLSKRAGLSPILGFLATGMALGPNGLSVVCDVKATEVLGELGIVFFLFEMGLELS 198
            L+LL   +L +P  K AG SPILGFLATG+ALGP+GL V+ D++ TE L ELG+VFFLFEMGLELS
Sbjct:    1 LLLLTTFALAIPTLKSAGASPILGFLATGVALGPHGLGVISDLRTTEALAELGVVFFLFEMGLELS 66
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BLAST of mRNA_P-wetherbeei_contig8412.1.1 vs. uniprot
Match: K0T9A0_THAOC (Na_H_Exchanger domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T9A0_THAOC)

HSP 1 Score: 93.6 bits (231), Expect = 9.090e-21
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 LILLLATSLVVPLSKRAGLSPILGFLATGMALGPNGLSVVCDVKATEVLGELGIVFFLFEMGLELS 198
            L LLLAT+L+ PL K AGLSPILGFLA+GM LGPNGL V+  +  TE LGELGIVFFLFEMG+ELS
Sbjct:  130 LCLLLATALITPLCKSAGLSPILGFLASGMLLGPNGLGVISGIHNTEHLGELGIVFFLFEMGIELS 195
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BLAST of mRNA_P-wetherbeei_contig8412.1.1 vs. uniprot
Match: A0A4D9DB16_9STRA (RCK N-terminal domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DB16_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.460e-20
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 LILLLATSLVVPLSKRAGLSPILGFLATGMALGPNGLSVVCDVKATEVLGELGIVFFLFEMGLELS 198
            L+LLL+T+LVVP+  R   SPILGFL TGM LGP GLSVV D+K TE L ELGIVFFLFEMGLELS
Sbjct:   52 LVLLLSTTLVVPIMTRLKTSPILGFLLTGMVLGPRGLSVVNDIKTTEALAELGIVFFLFEMGLELS 117
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BLAST of mRNA_P-wetherbeei_contig8412.1.1 vs. uniprot
Match: A0A7S1FWB1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWB1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.110e-20
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 LILLLATSLVVPLSKRAGLSPILGFLATGMALGPNGLSVVCDVKATEVLGELGIVFFLFEMGLELS 198
            L LL AT+LV PLS+RAG+SPILG+LA GM LGPNG +++  V +TEVL ELGIVFFLFEMG+ELS
Sbjct:  176 LYLLAATALVTPLSRRAGMSPILGYLALGMLLGPNGAALIKGVHSTEVLAELGIVFFLFEMGIELS 241
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BLAST of mRNA_P-wetherbeei_contig8412.1.1 vs. uniprot
Match: A0A7S0C7N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7N9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.780e-20
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 LILLLATSLVVPLSKRAGLSPILGFLATGMALGPNGLSVVCDVKATEVLGELGIVFFLFEMGLELS 198
            LILLLAT+LV PL+++A LSPILGFLA GM +GPNGL ++ ++  TE L ELGIVFFLFEMG+ELS
Sbjct:   27 LILLLATALVTPLAQKAKLSPILGFLAAGMLIGPNGLGLIAELHTTETLAELGIVFFLFEMGIELS 92
[Close]
BLAST of mRNA_P-wetherbeei_contig8412.1.1 vs. uniprot
Match: F0YC10_AURAN (RCK N-terminal domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC10_AURAN)

HSP 1 Score: 91.3 bits (225), Expect = 5.940e-20
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 LILLLATSLVVPLSKRAGLSPILGFLATGMALGPNGLSVVCDVKATEVLGELGIVFFLFEMGLELS 198
            L+LLLAT+ V+PL+KR GLSPILGFLATG+ LGPNG  ++ ++   E+L ELG+VFFLFEMGLELS
Sbjct:   22 LVLLLATATVIPLAKRVGLSPILGFLATGVFLGPNGGDIISNLHQAEILAELGVVFFLFEMGLELS 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8412.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5B4_9STRA1.210e-2280.65Sodium/hydrogen exchanger family-domain-containing... [more]
A0A6H5KT04_9PHAE2.230e-2272.73Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D8LS49_ECTSI2.320e-2272.73Similarity to sodium/hydrogen exchanger and potass... [more]
A0A4D9D2S5_9STRA1.580e-2174.24Na_H_Exchanger domain-containing protein n=1 Tax=N... [more]
F0XZB6_AURAN2.170e-2166.67Na_H_Exchanger domain-containing protein (Fragment... [more]
K0T9A0_THAOC9.090e-2174.24Na_H_Exchanger domain-containing protein (Fragment... [more]
A0A4D9DB16_9STRA2.460e-2074.24RCK N-terminal domain-containing protein n=2 Tax=M... [more]
A0A7S1FWB1_9STRA3.110e-2071.21Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S0C7N9_9STRA5.780e-2069.70Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
F0YC10_AURAN5.940e-2068.18RCK N-terminal domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8412contigP-wetherbeei_contig8412:900..1817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LS49
PFAMsNa_H_Exchanger,TrkA_N
Model size198
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.8e-23
EggNOG OGsCOG0475@1|root,KOG1650@2759|Eukaryota
Descriptionsolute:proton antiporter activity
Cds size198
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187038.9773173-CDS-P-wetherbeei_contig8412:899..10401683187038.9773173-CDS-P-wetherbeei_contig8412:899..1040Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8412 900..1040 +
1683187038.989047-CDS-P-wetherbeei_contig8412:1760..18171683187038.989047-CDS-P-wetherbeei_contig8412:1760..1817Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8412 1761..1817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8412.1.1prot_P-wetherbeei_contig8412.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8412 900..1817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8412.1.1

>prot_P-wetherbeei_contig8412.1.1 ID=prot_P-wetherbeei_contig8412.1.1|Name=mRNA_P-wetherbeei_contig8412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
LILLLATSLVVPLSKRAGLSPILGFLATGMALGPNGLSVVCDVKATEVLG
ELGIVFFLFEMGLELS
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mRNA from alignment at P-wetherbeei_contig8412:900..1817+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8412.1.1 ID=mRNA_P-wetherbeei_contig8412.1.1|Name=mRNA_P-wetherbeei_contig8412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig8412:900..1817+ (Phaeothamnion wetherbeei SAG_119_79)
CTCATCCTGCTGCTGGCAACGTCGCTGGTGGTGCCGCTGTCGAAGCGGGC
GGGGCTGTCCCCCATCCTGGGGTTCCTGGCGACGGGAATGGCGCTCGGCC
CCAACGGGCTCAGTGTCGTCTGCGACGTCAAGGCCACAGAGGTAAGAGTG
GCGAGGGATGCGCTACTTGCCCGGCGTTGGCATGCGCTCCTGTCCTTCTA
CTTTTGCGTTGCGGCTGCGTACTGCCGTTGTTGTGTGCGTTCACTCTTCA
TTCTGTGCTTTGTGTGTGTTGTGTTTGTCCGTCAAATCCTGCATCTTTTT
TGGGTCTCTCAACGGTGCGTCTCTTTTTTTGTTGGCCCCTCGAGCGGTGT
GTCTTGTTGCGACTCCATGTCCGATGCTTTCCCCCTCAATCAGCCACAAA
ATCGCTGTGCTGACTTCCCGCTTCTGCGTTGCTGGCATTGCTGGCTCCAA
TATTCGGGTCCGTGTGTGACATTCATCTCTTCTGCTCTGCCGACCAGTTC
CGCATCTGTCCGCTCCGTTGTCTCAACTTCTGTGTACCGTGCACCAGTGT
TTCTTTGTCTATCTGCTTTGCTGTCTTTAATTTTCCTAGTCTTCCTCTCT
TTCTCTCTCCTCATTTGCCTTACCTATCACGGCGGACTCCAATTCTGCGT
TGATGAGTATTTTCTGCCCATTGCGCCGATTCTCTTCCATTCTCCGTTGA
CGTCCTTTGCTGACCTGGTGCTGCATCTGTCTGTGCATCTTTTATTACGT
CTGCAGCTGCTGACTCCACTTTTGTACTTCTTAACCCTGCGCCTGCCTGC
CTTTCTTTCTTTTAATTCCATTTTCTCCCAATTCTTTCTTGACCCGCTCT
TCTGCCGGCAGGTCCTGGGCGAGCTCGGCATCGTCTTCTTCCTCTTCGAG
ATGGGCCTCGAGCTCTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8412:900..1817+

>mRNA_P-wetherbeei_contig8412.1.1 ID=mRNA_P-wetherbeei_contig8412.1.1|Name=mRNA_P-wetherbeei_contig8412.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig8412:900..1817+ (Phaeothamnion wetherbeei SAG_119_79)
CTCATCCTGCTGCTGGCAACGTCGCTGGTGGTGCCGCTGTCGAAGCGGGC
GGGGCTGTCCCCCATCCTGGGGTTCCTGGCGACGGGAATGGCGCTCGGCC
CCAACGGGCTCAGTGTCGTCTGCGACGTCAAGGCCACAGAGGTCCTGGGC
GAGCTCGGCATCGTCTTCTTCCTCTTCGAGATGGGCCTCGAGCTCTCT
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