mRNA_P-wetherbeei_contig84.12.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig84.12.1
Unique NamemRNA_P-wetherbeei_contig84.12.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig84.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig84contigP-wetherbeei_contig84:12993..13629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size622
Hectar predicted targeting categoryother localisation
Exons2
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187038.1061747-CDS-P-wetherbeei_contig84:12992..133731683187038.1061747-CDS-P-wetherbeei_contig84:12992..13373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig84 12993..13373 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187038.1166477-UTR-P-wetherbeei_contig84:13373..133851683187038.1166477-UTR-P-wetherbeei_contig84:13373..13385Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig84 13374..13385 -
1683187038.1288302-UTR-P-wetherbeei_contig84:13401..136291683187038.1288302-UTR-P-wetherbeei_contig84:13401..13629Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig84 13402..13629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig84.12.1prot_P-wetherbeei_contig84.12.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig84 12993..13373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig84.12.1

>prot_P-wetherbeei_contig84.12.1 ID=prot_P-wetherbeei_contig84.12.1|Name=mRNA_P-wetherbeei_contig84.12.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MGRSSQSAQTMKSALGAPWSSASAFNLRLPLSVLPLLPFEGRQGMPPSRF
ENGRGIEGFMAQAAQQWSSPPRPLPPRPLPGTSRAQPRGLWARGAPVVAK
ATILLPARAPARVSFLLSAALRLQQMG
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mRNA from alignment at P-wetherbeei_contig84:12993..13629-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig84.12.1 ID=mRNA_P-wetherbeei_contig84.12.1|Name=mRNA_P-wetherbeei_contig84.12.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=637bp|location=Sequence derived from alignment at P-wetherbeei_contig84:12993..13629- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGCGCCTGCGCTGCCGGCGACCGGCTGCAGCAGCATCCGCAACCAGG
ATGCCATGGCCGCCACCGCCGCAGCTGCCGCTGCTGCAGTCGCGACCCAT
GAAGAGGAAGAAAACGACACAGACAGCAGCATCGACTTTGAGGAGGAGGG
TCGCCGTCACTTTGGGGCTGGTGAGCACGGCACGGAACAGGAAGAGCTCC
CGAATCTCTTCGCCGAACTCGACCGCCGGTTGACGATCTTCGAGGCCAGC
GGGGCTATGGGGCGATCATCGCAGTCGGCGCAGACGATGAAAAGTGCGCT
AGGTGCTCCTTGGAGCTCCGCCAGTGCATTCAATCTCCGGCTTCCGCTCA
GCGTGCTACCCCTGCTGCCATTTGAAGGACGGCAAGGAATGCCGCCGTCG
CGATTCGAGAATGGTAGAGGCATCGAAGGATTCATGGCGCAGGCAGCGCA
GCAATGGTCGTCGCCGCCGCGACCACTGCCGCCGCGGCCGCTGCCAGGGA
CGTCGCGGGCTCAGCCGCGGGGGCTGTGGGCTCGCGGTGCTCCCGTTGTG
GCCAAGGCGACGATTCTTCTCCCCGCGCGTGCCCCGGCCCGTGTTTCGTT
TCTCCTCTCGGCAGCGCTACGCCTACAACAGATGGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig84:12993..13629-

>mRNA_P-wetherbeei_contig84.12.1 ID=mRNA_P-wetherbeei_contig84.12.1|Name=mRNA_P-wetherbeei_contig84.12.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig84:12993..13629- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCGATCATCGCAGTCGGCGCAGACGATGAAAAGTGCGCTAGGTGC
TCCTTGGAGCTCCGCCAGTGCATTCAATCTCCGGCTTCCGCTCAGCGTGC
TACCCCTGCTGCCATTTGAAGGACGGCAAGGAATGCCGCCGTCGCGATTC
GAGAATGGTAGAGGCATCGAAGGATTCATGGCGCAGGCAGCGCAGCAATG
GTCGTCGCCGCCGCGACCACTGCCGCCGCGGCCGCTGCCAGGGACGTCGC
GGGCTCAGCCGCGGGGGCTGTGGGCTCGCGGTGCTCCCGTTGTGGCCAAG
GCGACGATTCTTCTCCCCGCGCGTGCCCCGGCCCGTGTTTCGTTTCTCCT
CTCGGCAGCGCTACGCCTACAACAGATGGGA
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