mRNA_P-wetherbeei_contig8395.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8395.1.1
Unique NamemRNA_P-wetherbeei_contig8395.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8395.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8395contigP-wetherbeei_contig8395:634..2814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1775
Hectar predicted targeting categoryother localisation
Exons2
Cds size1386
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187037.7262864-UTR-P-wetherbeei_contig8395:633..6381683187037.7262864-UTR-P-wetherbeei_contig8395:633..638Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8395 634..638 -
1683187037.751811-UTR-P-wetherbeei_contig8395:2024..22011683187037.751811-UTR-P-wetherbeei_contig8395:2024..2201Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8395 2025..2201 -
1683187037.7615228-UTR-P-wetherbeei_contig8395:2607..28141683187037.7615228-UTR-P-wetherbeei_contig8395:2607..2814Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8395 2608..2814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187037.7388742-CDS-P-wetherbeei_contig8395:638..20241683187037.7388742-CDS-P-wetherbeei_contig8395:638..2024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8395 639..2024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8395.1.1prot_P-wetherbeei_contig8395.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8395 639..2024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8395.1.1

>prot_P-wetherbeei_contig8395.1.1 ID=prot_P-wetherbeei_contig8395.1.1|Name=mRNA_P-wetherbeei_contig8395.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=462bp
MGGEDGSLSFLTCAEEFGAAGGWRSEAGGGRGSGGGGEHGANAGSGGAEV
GGWFGRGIDFGWGRVGWADGDVGARDGNRNQGRSENDGAGVVWRKQHRQW
QQQKQPRRLFCLEHLSGARAVSQVAFAPGGRLHAVAFGCLGAPGYRGGGG
VALLSPDAAAAGGRVVRNVIVPPLWRGGADSVWAVAWDDDARRVAFGANR
GAGAVALLDLNRLDCVVRGGAIAAASDVFALAFLPGRRSDLVLGTRSGLV
TIADVRAGAGGGGGEILGDIVPSCARMPSLARFPSSMDHIRVLRGDVHVL
AGDKTGGLCLLDLRKAAGGGPSGVGSSGGSGGSGGGHAWGAGATSGATAV
RAAAAVRGPAVVQFLRASDAPYRGGRSQFALDAKETLVVAPWAAGEGAAG
ALGDRLEVLSLGTKGAQLASLPAPSARMIVAADAAAAEGAGPLSFWAASH
SASTVYRIGLV*
back to top

mRNA from alignment at P-wetherbeei_contig8395:634..2814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8395.1.1 ID=mRNA_P-wetherbeei_contig8395.1.1|Name=mRNA_P-wetherbeei_contig8395.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2181bp|location=Sequence derived from alignment at P-wetherbeei_contig8395:634..2814- (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCTACAGAAAAGGGAAAGAAAGTAGTTTCCTGGCGCCGTCGCCGCC
GACGCGGCAGCAGCGGTCGCAAGGGCCATACCCTGCAGCTGCTGCGGCAG
CGAGGTTTGCCTCCCGTCGCTGTGACCCGCTGCGGCAAAGCTCAGTGCCC
CGTTTCGACCCAAGCTTCTCGGCGCCGACTTTTTTTAGTGTCATTCTCGG
GAGACAGGTTCGTGTTGAAGCAATGAGTGAGGAGAGGAGGAAGGTTTTAA
AATATGTGAGGAGTTATGATACTTGTGTTATGAACGCAGGCACAGCCGAT
TCGACTCGGTTACGCCTCCATCGGATCTCGCTCTCACATATGAATTGTGA
ATGGAACTGCAGAAGTAGTACAGCTTCTGTGCCATCGGCGCAGAGCGTCG
CGTTGTTACTTCGCACGCATCCCCTTGTCCAAGCTCTAGGTCGCAATCGG
CTATACCAGAAATGAGCTTGTTTAAAGCCCACACAGAACCTGTGCGTTAA
GACTAGTTCAGTAGCATCACTTCGATTTTTTGTCTACAGGAGCTTCCCAG
CACTAATACTGATACCTTTGTCCTGACGCTGATCGATCTACTTCTTCTTC
TCACCTTGGTCAGGTCTGGGCGGAGACGGCGGGCCCACGAGGCTTGTATC
GCGCGCACGCCGAGGCCGTGGCGGGCAGCGACGGCTTCGGCGTCGCCGCC
TGCGCAGTGGCGTGGCCGCGCGGTGACCGGAACGGATCCGCGACGGCCGC
CAGCGCGCTTTGCTGCGACCCGGCCTCGGGCCTGCTCGCCATGGGTGGCG
AGGACGGCTCGCTGAGCTTTCTGACATGCGCAGAGGAGTTCGGTGCTGCT
GGTGGCTGGCGGTCGGAAGCTGGCGGCGGCCGCGGCAGCGGCGGTGGCGG
CGAGCACGGAGCTAACGCTGGCAGCGGCGGGGCTGAAGTCGGCGGCTGGT
TCGGGAGAGGCATCGACTTTGGCTGGGGGCGCGTTGGGTGGGCAGACGGC
GACGTGGGTGCCCGTGACGGCAACAGGAACCAAGGCCGCTCGGAGAACGA
CGGCGCAGGTGTAGTGTGGCGGAAGCAGCATCGGCAGTGGCAGCAACAAA
AGCAACCGCGGCGGCTGTTTTGCCTGGAGCACCTCTCTGGAGCGCGCGCA
GTCAGCCAGGTGGCGTTCGCGCCGGGCGGCCGGCTGCATGCCGTCGCTTT
CGGCTGCCTCGGTGCGCCGGGCTACCGCGGCGGCGGCGGCGTGGCGCTGC
TGTCACCCGACGCGGCGGCTGCCGGCGGCCGGGTCGTGCGGAACGTCATC
GTGCCACCGCTGTGGCGAGGCGGCGCCGACAGCGTCTGGGCGGTCGCCTG
GGACGACGACGCGCGGCGAGTGGCGTTCGGCGCCAACCGCGGCGCCGGCG
CGGTCGCATTGCTGGACCTGAACCGGCTCGACTGCGTCGTGCGCGGCGGC
GCGATAGCTGCTGCCAGCGATGTCTTTGCACTGGCCTTCCTCCCGGGGCG
GCGCAGCGATCTCGTGCTCGGAACGCGCAGCGGGCTCGTCACCATCGCCG
ACGTGCGGGCAGGTGCGGGCGGCGGCGGCGGTGAGATCCTAGGCGACATT
GTGCCAAGCTGCGCCAGAATGCCATCGCTGGCGCGCTTCCCGTCATCGAT
GGACCACATCCGCGTGCTGCGCGGCGACGTTCACGTGCTGGCCGGCGACA
AAACGGGCGGACTTTGCCTGCTCGATCTTCGCAAGGCGGCCGGCGGCGGC
CCCAGCGGTGTTGGCAGCAGCGGCGGCAGCGGCGGCAGCGGTGGCGGTCA
CGCCTGGGGCGCCGGTGCCACAAGCGGTGCCACCGCAGTGCGCGCTGCCG
CCGCCGTGAGGGGCCCGGCGGTCGTGCAGTTCTTGCGCGCGAGCGACGCT
CCATACCGCGGTGGCCGCTCGCAGTTTGCTCTGGACGCCAAAGAAACGCT
CGTCGTGGCGCCGTGGGCCGCGGGGGAAGGGGCCGCCGGCGCGCTCGGTG
ACCGCCTGGAGGTCCTCTCGCTGGGCACCAAGGGTGCGCAGTTGGCATCG
CTGCCGGCGCCGTCAGCACGGATGATTGTGGCGGCCGATGCCGCCGCAGC
CGAGGGAGCCGGCCCGCTGTCGTTCTGGGCGGCGTCGCATTCGGCAAGCA
CCGTATACAGAATCGGACTCGTTTGATTTGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8395:634..2814-

>mRNA_P-wetherbeei_contig8395.1.1 ID=mRNA_P-wetherbeei_contig8395.1.1|Name=mRNA_P-wetherbeei_contig8395.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1386bp|location=Sequence derived from alignment at P-wetherbeei_contig8395:634..2814- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGGCGAGGACGGCTCGCTGAGCTTTCTGACATGCGCAGAGGAGTT
CGGTGCTGCTGGTGGCTGGCGGTCGGAAGCTGGCGGCGGCCGCGGCAGCG
GCGGTGGCGGCGAGCACGGAGCTAACGCTGGCAGCGGCGGGGCTGAAGTC
GGCGGCTGGTTCGGGAGAGGCATCGACTTTGGCTGGGGGCGCGTTGGGTG
GGCAGACGGCGACGTGGGTGCCCGTGACGGCAACAGGAACCAAGGCCGCT
CGGAGAACGACGGCGCAGGTGTAGTGTGGCGGAAGCAGCATCGGCAGTGG
CAGCAACAAAAGCAACCGCGGCGGCTGTTTTGCCTGGAGCACCTCTCTGG
AGCGCGCGCAGTCAGCCAGGTGGCGTTCGCGCCGGGCGGCCGGCTGCATG
CCGTCGCTTTCGGCTGCCTCGGTGCGCCGGGCTACCGCGGCGGCGGCGGC
GTGGCGCTGCTGTCACCCGACGCGGCGGCTGCCGGCGGCCGGGTCGTGCG
GAACGTCATCGTGCCACCGCTGTGGCGAGGCGGCGCCGACAGCGTCTGGG
CGGTCGCCTGGGACGACGACGCGCGGCGAGTGGCGTTCGGCGCCAACCGC
GGCGCCGGCGCGGTCGCATTGCTGGACCTGAACCGGCTCGACTGCGTCGT
GCGCGGCGGCGCGATAGCTGCTGCCAGCGATGTCTTTGCACTGGCCTTCC
TCCCGGGGCGGCGCAGCGATCTCGTGCTCGGAACGCGCAGCGGGCTCGTC
ACCATCGCCGACGTGCGGGCAGGTGCGGGCGGCGGCGGCGGTGAGATCCT
AGGCGACATTGTGCCAAGCTGCGCCAGAATGCCATCGCTGGCGCGCTTCC
CGTCATCGATGGACCACATCCGCGTGCTGCGCGGCGACGTTCACGTGCTG
GCCGGCGACAAAACGGGCGGACTTTGCCTGCTCGATCTTCGCAAGGCGGC
CGGCGGCGGCCCCAGCGGTGTTGGCAGCAGCGGCGGCAGCGGCGGCAGCG
GTGGCGGTCACGCCTGGGGCGCCGGTGCCACAAGCGGTGCCACCGCAGTG
CGCGCTGCCGCCGCCGTGAGGGGCCCGGCGGTCGTGCAGTTCTTGCGCGC
GAGCGACGCTCCATACCGCGGTGGCCGCTCGCAGTTTGCTCTGGACGCCA
AAGAAACGCTCGTCGTGGCGCCGTGGGCCGCGGGGGAAGGGGCCGCCGGC
GCGCTCGGTGACCGCCTGGAGGTCCTCTCGCTGGGCACCAAGGGTGCGCA
GTTGGCATCGCTGCCGGCGCCGTCAGCACGGATGATTGTGGCGGCCGATG
CCGCCGCAGCCGAGGGAGCCGGCCCGCTGTCGTTCTGGGCGGCGTCGCAT
TCGGCAAGCACCGTATACAGAATCGGACTCGTTTGA
back to top