mRNA_P-wetherbeei_contig8384.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8384.1.1
Unique NamemRNA_P-wetherbeei_contig8384.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8384.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8384contigP-wetherbeei_contig8384:40..2802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1287
Hectar predicted targeting categoryother localisation
Exons4
Cds size1287
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187036.9293873-CDS-P-wetherbeei_contig8384:39..3071683187036.9293873-CDS-P-wetherbeei_contig8384:39..307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8384 40..307 +
1683187036.940052-CDS-P-wetherbeei_contig8384:763..10451683187036.940052-CDS-P-wetherbeei_contig8384:763..1045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8384 764..1045 +
1683187036.9503782-CDS-P-wetherbeei_contig8384:1559..18641683187036.9503782-CDS-P-wetherbeei_contig8384:1559..1864Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8384 1560..1864 +
1683187036.9609032-CDS-P-wetherbeei_contig8384:2370..28021683187036.9609032-CDS-P-wetherbeei_contig8384:2370..2802Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8384 2371..2802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8384.1.1prot_P-wetherbeei_contig8384.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8384 40..2802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8384.1.1

>prot_P-wetherbeei_contig8384.1.1 ID=prot_P-wetherbeei_contig8384.1.1|Name=mRNA_P-wetherbeei_contig8384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=429bp
GGGSAAGGGRAGGGDGPQEAGSGQGERGSGGGRAARTGRGGGGNRGEATN
GAGCGAGRGCHGWRGGDAARGDAARGAGGGAGRGGFKRGCGGHVRRGGLA
HGGGGSGALHRGSCRGGGSGGGSDRCQSKRSRDCHRSGAAGAGLRDSAGR
GRRSGSSCGDGRRRRERRQGTGGGNGGSSGGICETRAAAAVNAAAAATGD
AEASTRRAEKAEQSAETMREDLAAAVAAAAAAAAVAAESWAPRVAAAEEA
KTAAEVAAVAAREEAMAVAAAAQQEAARSEALGSEARSDAAAAVAELAGA
QQALAAAEEAAAAAGAARSAAEVEAAELRWRLDEAMAAAVAARGEADAEV
EQLRRERDEAVKAADVAAASAAASRAREVEVAKRLAAAEGAETELRKQLA
AAEGNAASTAEAAAAATAAHEAELRQRLA
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mRNA from alignment at P-wetherbeei_contig8384:40..2802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8384.1.1 ID=mRNA_P-wetherbeei_contig8384.1.1|Name=mRNA_P-wetherbeei_contig8384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2763bp|location=Sequence derived from alignment at P-wetherbeei_contig8384:40..2802+ (Phaeothamnion wetherbeei SAG_119_79)
GGAGGCGGCAGCGCGGCGGGCGGCGGCCGAGCAGGCGGTGGAGACGGTCC
GCAAGAAGCTGGCAGCGGCCAAGGAGAACGAGGCAGTGGCGGTGGTCGCG
CTGCGCGAACGGGACGCGGCGGCGGCGGAAACAGAGGCGAAGCTACAAAC
GGAGCTGGCTGCGGCGCGGGACGAGGTTGCCACGGCTGGAGGGGCGGCGA
TGCAGCACGTGGCGACGCTGCACGCGGAGCTGGCGGCGGCGCAGGAAGAG
GCGGCTTCAAACGAGGCTGTGCTCCGGGCAGCGCTGACGGCAGCGCGGGG
AGAGGCGGCAGCAACCGAGGCTACGCTGCGGGCAGCGCTGACGGAGGCAC
GGGAGGAGGCCGCAGCAACTGAGGCAACGCTGCAGATGGAGCTGGCAGCG
GCGCGGGAAGAGGCGGAAGCAACCGAGGCTGAGCTCCACGCAGCGCTGAC
GGCGGCAAGGGAGGACGCCGCAGCCGTCAGTGCCGAGGCCCAGCGACTGT
CACAGGAGGCTGCCGCTACCGCCACCTCCGGCGCCGCCGCTGTCTCCGGC
GACGAGGATGCGGCAAAGAAGCAACGAGACGAGAACGAAGAAGCGGTTTC
GCAGCTGAAGCAAGAGGCGGAGCAGCGCGCCGCCGAAGTTGACGCGCTGC
GGCAGGAGCTGGAAGGACTGCGGTCTGAGCTGGAGCGGTTGCGGGCCCGC
GCTGATAACTGCGATGCCCTGGAGGCGGCGGTCACGTCCGCCGAGGCGGA
CTTGCACACGGCGGCGGCGGCAGTGGCGCGCTCCACCGCGGAAGCTGCAG
AGGCGGAGGCAGCGGCGGCGGCAGCGATCGCTGCCAGTCGAAGCGAAGCC
GCGACTGCCATCGCAGTGGTGCAGCAGGAGCTGGACTCCGCGACAGCGCG
GGCAGAGGCCGCAGAAGCGGCAGCAGCTGCGGCGATGGCCGGCGCCGCCG
AGAGCGCCGCCAAGGCACAGGCGGCGGCAATGGCGGAAGCAGCGGCGGAA
TATGCGGTGGCGAGGGGGTTTAGTGCCCTCGACGCCGCCCGAGAGGAAGA
CGAGGCCATGGCCCGCGACCTGCGGGACCGTTTGACCGAGGCGGCCGCGG
CGGCGGACAGCGAGCGGACGGCGGAGACAACTGAGGCGCTGGTGGCGGCG
GGCGAAAAGACGGGTGCCGAGACCGGCGCCCTCCGCACGCGCGTCGAGGA
GCTAGAAGCCGCCGCAACGTCGGAGGCCGCCCGCTTCCTCGGCCGCGTCG
CCGAAATGGAGAACACCGCCAATGCGGCTGCGGCAATCGACGCCGCTGAT
GCCAGTGCCGTGAACGCGGCAGCGGAGGCGGAGGCGCTACGAGCGCGCCT
TGCCGATGAGGTAGCAACTGCGGTCGGGATGCAGACGCGACTGGCGGCGA
CCGGCGCGGCGGTGACGGCCGCGGTTGGCGATGGGACAGAGGACGTCGAG
GCAGTGTCTGCGCGGTTGGCACTCCTTGCGCAGCGGGAGGCAGAGGCACA
GCGGGCGGCGGCAGGTGCAGAGACGCGGGCGGCGGCTGCGGTCAACGCGG
CGGCAGCGGCGACGGGTGACGCGGAGGCGTCGACGCGTCGCGCGGAAAAA
GCCGAGCAGTCGGCAGAGACGATGCGAGAGGATCTGGCAGCGGCAGTGGC
GGCGGCCGCGGCCGCGGCGGCCGTGGCCGCCGAGAGCTGGGCCCCGCGCG
TCGCGGCGGCGGAGGAGGCGAAGACGGCAGCGGAGGTGGCCGCAGTGGCG
GCTCGTGAGGAGGCCATGGCAGTTGCGGCGGCGGCGCAGCAGGAGGCGGC
ACGTTCCGAAGCGCTCGGCAGCGAGGTGGCGCGGCTGGAAGAGCGCAACG
CGGCGCTGGCGGCGGCCGTCACGGCGGCGCGGGGAGAGTTCGAGCAGGTG
AGAAGGGGGCGAACAGGAATCTACCTGCAACCGTACGGTGAAGCCGTAGT
GAACCCGAGTTTGCGTCTGTGTAGTTTACCGTATCGGCCGTTTGTTGCTT
TTCTATGGGAATGCCGGCTTCTGTGTCTCTTCTCTTCTAAAGTTCCACTC
AGGCTTCGGAAGTTCCTTTGCTCTTTTAAAGGGCGACCCGGCTCAAACAT
GCCTTTCTTCCAACACGGCCGTCTTTGGACGTAGCTCGGATCACGGCCCA
CACTGTTCATAATTCTTCTTTCCTTATGCCCCCTTCCCTCATCAGCCGCA
ATAGCTACCTCTTGCGGACCCATCCGACGGTTACTGTTATGGCCACCCAA
CCACAACAGGCCCAGGAGGCGCTTCGGACGGTGTCGACGCTGACAAATGA
TTACGAAGCCGTGCGACGCGAGCTGGAGGAGGCGCGCAGCGACGCCGCCG
CTGCCGTCGCCGAGCTCGCTGGCGCTCAGCAGGCGCTGGCGGCGGCAGAG
GAGGCGGCGGCGGCGGCCGGGGCGGCGAGGTCGGCAGCGGAAGTTGAGGC
AGCGGAGCTGCGGTGGCGACTTGACGAGGCGATGGCGGCGGCGGTGGCGG
CCCGCGGGGAGGCCGATGCAGAGGTGGAACAGCTGCGGCGAGAGCGGGAC
GAAGCTGTCAAGGCGGCGGATGTCGCAGCGGCGTCGGCGGCCGCATCGAG
AGCGCGTGAAGTCGAGGTCGCCAAGCGCCTGGCGGCTGCGGAAGGCGCCG
AAACAGAGCTTCGGAAGCAGCTGGCGGCTGCGGAAGGCAATGCGGCGTCC
ACTGCTGAAGCGGCTGCTGCGGCGACGGCAGCGCACGAGGCAGAGCTAAG
ACAGCGACTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8384:40..2802+

>mRNA_P-wetherbeei_contig8384.1.1 ID=mRNA_P-wetherbeei_contig8384.1.1|Name=mRNA_P-wetherbeei_contig8384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1287bp|location=Sequence derived from alignment at P-wetherbeei_contig8384:40..2802+ (Phaeothamnion wetherbeei SAG_119_79)
GGAGGCGGCAGCGCGGCGGGCGGCGGCCGAGCAGGCGGTGGAGACGGTCC
GCAAGAAGCTGGCAGCGGCCAAGGAGAACGAGGCAGTGGCGGTGGTCGCG
CTGCGCGAACGGGACGCGGCGGCGGCGGAAACAGAGGCGAAGCTACAAAC
GGAGCTGGCTGCGGCGCGGGACGAGGTTGCCACGGCTGGAGGGGCGGCGA
TGCAGCACGTGGCGACGCTGCACGCGGAGCTGGCGGCGGCGCAGGAAGAG
GCGGCTTCAAACGAGGCTGCGGCGGTCACGTCCGCCGAGGCGGACTTGCA
CACGGCGGCGGCGGCAGTGGCGCGCTCCACCGCGGAAGCTGCAGAGGCGG
AGGCAGCGGCGGCGGCAGCGATCGCTGCCAGTCGAAGCGAAGCCGCGACT
GCCATCGCAGTGGTGCAGCAGGAGCTGGACTCCGCGACAGCGCGGGCAGA
GGCCGCAGAAGCGGCAGCAGCTGCGGCGATGGCCGGCGCCGCCGAGAGCG
CCGCCAAGGCACAGGCGGCGGCAATGGCGGAAGCAGCGGCGGAATATGCG
AGACGCGGGCGGCGGCTGCGGTCAACGCGGCGGCAGCGGCGACGGGTGAC
GCGGAGGCGTCGACGCGTCGCGCGGAAAAAGCCGAGCAGTCGGCAGAGAC
GATGCGAGAGGATCTGGCAGCGGCAGTGGCGGCGGCCGCGGCCGCGGCGG
CCGTGGCCGCCGAGAGCTGGGCCCCGCGCGTCGCGGCGGCGGAGGAGGCG
AAGACGGCAGCGGAGGTGGCCGCAGTGGCGGCTCGTGAGGAGGCCATGGC
AGTTGCGGCGGCGGCGCAGCAGGAGGCGGCACGTTCCGAAGCGCTCGGCA
GCGAGGCGCGCAGCGACGCCGCCGCTGCCGTCGCCGAGCTCGCTGGCGCT
CAGCAGGCGCTGGCGGCGGCAGAGGAGGCGGCGGCGGCGGCCGGGGCGGC
GAGGTCGGCAGCGGAAGTTGAGGCAGCGGAGCTGCGGTGGCGACTTGACG
AGGCGATGGCGGCGGCGGTGGCGGCCCGCGGGGAGGCCGATGCAGAGGTG
GAACAGCTGCGGCGAGAGCGGGACGAAGCTGTCAAGGCGGCGGATGTCGC
AGCGGCGTCGGCGGCCGCATCGAGAGCGCGTGAAGTCGAGGTCGCCAAGC
GCCTGGCGGCTGCGGAAGGCGCCGAAACAGAGCTTCGGAAGCAGCTGGCG
GCTGCGGAAGGCAATGCGGCGTCCACTGCTGAAGCGGCTGCTGCGGCGAC
GGCAGCGCACGAGGCAGAGCTAAGACAGCGACTGGCC
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