mRNA_P-wetherbeei_contig8380.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8380.1.1
Unique NamemRNA_P-wetherbeei_contig8380.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8380.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8380contigP-wetherbeei_contig8380:1064..2815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1752
Hectar predicted targeting categoryother localisation
Exons1
Cds size912
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187036.8403614-UTR-P-wetherbeei_contig8380:1063..17501683187036.8403614-UTR-P-wetherbeei_contig8380:1063..1750Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8380 1064..1750 -
1683187036.859935-UTR-P-wetherbeei_contig8380:2662..28151683187036.859935-UTR-P-wetherbeei_contig8380:2662..2815Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8380 2663..2815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187036.8503866-CDS-P-wetherbeei_contig8380:1750..26621683187036.8503866-CDS-P-wetherbeei_contig8380:1750..2662Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8380 1751..2662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8380.1.1prot_P-wetherbeei_contig8380.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8380 1751..2662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8380.1.1

>prot_P-wetherbeei_contig8380.1.1 ID=prot_P-wetherbeei_contig8380.1.1|Name=mRNA_P-wetherbeei_contig8380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=304bp
MAVTAEATAREAATVGRQTAAGASMEERLRALEDMLLAAGRRGGGGSGNN
GGIDGADGDVDIADDGGDRGGGRGSGGGGSSSGGSGSGGGDGGSQFAAPE
WHARLQEDLSTEVAVRVTAAVRQATTEAEVTRRIDYLRLEGASRSLTERL
SALERSVAREQQASLRLLETIVGAAAAAVPASATEGADSSIDHERQNRHA
AADRLGGRVGGAAAVGAGGPPPLPQPQGQGSNGNGNGVAARGSSGGAGGV
RSQNGHGGARDAWGPGPRPVAAEARLEPVARRLNRQVRPHGATGQRAPQK
AFA*
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mRNA from alignment at P-wetherbeei_contig8380:1064..2815-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8380.1.1 ID=mRNA_P-wetherbeei_contig8380.1.1|Name=mRNA_P-wetherbeei_contig8380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1752bp|location=Sequence derived from alignment at P-wetherbeei_contig8380:1064..2815- (Phaeothamnion wetherbeei SAG_119_79)
TCCCATGCGTTTGTAGCTTTCCCGAATGGCGGTGAAGGCGGCGGCGGCAG
CGGCAGCGGTGGGGGCGGCGGCAATAACGGTGCCGATGCTGGCGACGGCG
CCGCCACTGTTGCTTCGCCGAGCGCCTCCCGGCCGGCTGCGGCTGCTGCG
GCTATGGCTGTGACGGCGGAAGCCACAGCGAGAGAGGCGGCGACAGTTGG
CCGACAAACCGCTGCGGGCGCAAGCATGGAGGAGCGTCTGCGGGCATTGG
AAGACATGCTGCTGGCTGCCGGCAGGCGCGGCGGCGGCGGCAGCGGCAAT
AACGGCGGTATTGACGGCGCCGATGGCGATGTCGACATCGCCGACGATGG
CGGCGATCGCGGCGGCGGCCGTGGCAGCGGCGGCGGCGGCAGTAGCAGCG
GTGGCAGCGGTAGTGGCGGCGGCGACGGCGGCAGTCAGTTTGCAGCACCG
GAATGGCACGCCCGGCTGCAGGAGGACCTGTCGACAGAGGTGGCGGTGCG
GGTGACGGCGGCGGTGCGGCAGGCGACAACGGAGGCCGAAGTGACGCGCC
GCATCGACTACCTGCGGCTGGAGGGCGCCTCGCGCAGCCTGACGGAGCGG
CTGTCGGCGCTGGAGCGGAGCGTGGCGCGGGAGCAGCAGGCTAGCCTCCG
GCTGCTCGAGACTATCGTCGGGGCGGCGGCAGCGGCGGTGCCTGCCTCTG
CTACAGAGGGGGCGGACTCCTCCATCGACCACGAGCGCCAAAACAGGCAT
GCCGCTGCCGACCGTCTTGGCGGCAGGGTGGGCGGCGCTGCTGCCGTTGG
GGCAGGAGGGCCGCCGCCGTTGCCGCAGCCGCAGGGGCAGGGCAGCAACG
GCAACGGTAACGGCGTAGCTGCCCGGGGCAGCAGCGGCGGCGCGGGCGGC
GTTCGCTCGCAGAACGGGCACGGAGGTGCCAGGGACGCGTGGGGGCCCGG
GCCGCGGCCGGTGGCGGCGGAGGCGCGACTGGAGCCAGTGGCGCGGCGGC
TTAATAGGCAAGTCCGCCCTCACGGGGCGACGGGGCAGCGAGCGCCACAA
AAGGCATTTGCCTGATGGTGTGTAGGATATCCGTGCCCTTCTTCCGGACC
CTCATTGAGTCCCGGCACCCCGCTTGTTGGGTAGCGCCCACACGAGGGAA
GGATGTTGGTTTCCACTTCGGAGTCCGCACTTCGACCCGGAGGGCTGCGG
AACTGCGATTTGAGATAAGGGTGGTATGGAAACAGAGGTAGCTAGTTTAA
AGGAGAAGGAGAGAGGCTTCGCGCTTCGTGCTTCATCGTGCTGCCGCCGC
TACCGCTGCTGTTCCAACTGCTTCCGATGTCAGCGGCGCGGCTGTTGCTC
TTGACACTGCAATCAGATTTGTCATGGAAGTGGGGAGAAGACTCTGACCT
TGTTCCGTTTCGGCAGCTGCTGCCGATGCTACTGCTATCGCCATCGGCTG
CCTCCTCTGCCGTGGCCGCTGCCGCCGCCAGTGCCACCATCACTGCCGCG
CCGCCACCGCGGGCTATGCCGACCGCATCTGTGCAGCCTAACCCGGACAG
GGGATCCAAGAGGCAGCAGGGACAGCAGCGCCAGAGGTGCGGCTACGGCC
GAATTCCCCTTCCGGCATTACCAGGTCTATCGAAACTGAAGGCGCTACGC
GTGCATGCTACGGAACTTTGACCTCTTCCCAGCGTACGTAGCAGAAATAT
TAGTGCTTTGGCAGAATTCAGAATTGAACTTGCCTCGCGGACATGGGGGG
CC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8380:1064..2815-

>mRNA_P-wetherbeei_contig8380.1.1 ID=mRNA_P-wetherbeei_contig8380.1.1|Name=mRNA_P-wetherbeei_contig8380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=912bp|location=Sequence derived from alignment at P-wetherbeei_contig8380:1064..2815- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGTGACGGCGGAAGCCACAGCGAGAGAGGCGGCGACAGTTGGCCG
ACAAACCGCTGCGGGCGCAAGCATGGAGGAGCGTCTGCGGGCATTGGAAG
ACATGCTGCTGGCTGCCGGCAGGCGCGGCGGCGGCGGCAGCGGCAATAAC
GGCGGTATTGACGGCGCCGATGGCGATGTCGACATCGCCGACGATGGCGG
CGATCGCGGCGGCGGCCGTGGCAGCGGCGGCGGCGGCAGTAGCAGCGGTG
GCAGCGGTAGTGGCGGCGGCGACGGCGGCAGTCAGTTTGCAGCACCGGAA
TGGCACGCCCGGCTGCAGGAGGACCTGTCGACAGAGGTGGCGGTGCGGGT
GACGGCGGCGGTGCGGCAGGCGACAACGGAGGCCGAAGTGACGCGCCGCA
TCGACTACCTGCGGCTGGAGGGCGCCTCGCGCAGCCTGACGGAGCGGCTG
TCGGCGCTGGAGCGGAGCGTGGCGCGGGAGCAGCAGGCTAGCCTCCGGCT
GCTCGAGACTATCGTCGGGGCGGCGGCAGCGGCGGTGCCTGCCTCTGCTA
CAGAGGGGGCGGACTCCTCCATCGACCACGAGCGCCAAAACAGGCATGCC
GCTGCCGACCGTCTTGGCGGCAGGGTGGGCGGCGCTGCTGCCGTTGGGGC
AGGAGGGCCGCCGCCGTTGCCGCAGCCGCAGGGGCAGGGCAGCAACGGCA
ACGGTAACGGCGTAGCTGCCCGGGGCAGCAGCGGCGGCGCGGGCGGCGTT
CGCTCGCAGAACGGGCACGGAGGTGCCAGGGACGCGTGGGGGCCCGGGCC
GCGGCCGGTGGCGGCGGAGGCGCGACTGGAGCCAGTGGCGCGGCGGCTTA
ATAGGCAAGTCCGCCCTCACGGGGCGACGGGGCAGCGAGCGCCACAAAAG
GCATTTGCCTGA
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