mRNA_P-wetherbeei_contig837.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig837.3.1
Unique NamemRNA_P-wetherbeei_contig837.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig837.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig837contigP-wetherbeei_contig837:5811..7859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2049
Hectar predicted targeting categoryother localisation
Exons1
Cds size1635
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187036.164723-UTR-P-wetherbeei_contig837:5810..58781683187036.164723-UTR-P-wetherbeei_contig837:5810..5878Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig837 5811..5878 +
1683187036.1905808-UTR-P-wetherbeei_contig837:7513..78591683187036.1905808-UTR-P-wetherbeei_contig837:7513..7859Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig837 7514..7859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187036.1810882-CDS-P-wetherbeei_contig837:5878..75131683187036.1810882-CDS-P-wetherbeei_contig837:5878..7513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig837 5879..7513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig837.3.1prot_P-wetherbeei_contig837.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig837 5879..7513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig837.3.1

>prot_P-wetherbeei_contig837.3.1 ID=prot_P-wetherbeei_contig837.3.1|Name=mRNA_P-wetherbeei_contig837.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=545bp
MKGRTHGAPHGAAGAAAAAASAATAAGHKTAAGKPTAPSAGGGAASAAAA
AAAAEAEKRRRLLRWRVPAALDLRFLPADQRVVEVASEEVGLQQSRLRGR
MEEVYLDARHIPPTPAEPPLAVIGAASGGDDDAGILIPFVNEEEEEREAA
ARAEAEAAAVAAAAAAAVERRLEEALGRLKPAHAVAFRQRLGREGGLVPA
VTMPGGFIDEGLLAAYAQQALMMPAHLPLPIPLPPHLRHVAPPPQQVQQP
PPGQQQMQPPPQQMMQQMAPQQMQQMPLPQMVYTNGQMVYATSQGMMTTT
GMAPPPHQQQVAVVPGTASVYMPPLQQQLPQMAPAPPGYMAAPPQQQQQV
PGGYVMQMPGAPPMQMQPGQPGQPGQPYQMPPAPYYYTTPQQQQPLQMAP
SPGQYVMAPPHQQQPPPQQPPQPPRRPPERSPSPPGHRRYDDRYGDSDRG
GGGGRYGDGRDRDEGRDQDRAGGGGRSDRDRGEHQERPMTAALAARRKTI
PCEFFGKPGGCRRGDSCMFLHDAERCKALPQRPGRGFAGRGPSR*
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mRNA from alignment at P-wetherbeei_contig837:5811..7859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig837.3.1 ID=mRNA_P-wetherbeei_contig837.3.1|Name=mRNA_P-wetherbeei_contig837.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2049bp|location=Sequence derived from alignment at P-wetherbeei_contig837:5811..7859+ (Phaeothamnion wetherbeei SAG_119_79)
ACCACCACCTCTCGCCGGCAGAGTGGGAGGAACGCGTCAAGCACGAACGC
GAGCTGGAGCGGCAGGTCATGAAGGGGCGGACGCACGGTGCGCCACACGG
CGCCGCCGGCGCGGCCGCAGCGGCGGCATCGGCGGCTACTGCAGCAGGCC
ACAAGACCGCCGCCGGGAAGCCGACTGCGCCGAGTGCTGGTGGCGGGGCG
GCCTCTGCCGCGGCAGCCGCGGCGGCGGCCGAGGCGGAGAAGCGGCGGCG
TCTGCTGCGGTGGCGGGTGCCGGCGGCGCTCGACCTGCGGTTTCTGCCGG
CGGACCAGCGCGTGGTGGAGGTGGCGAGTGAGGAAGTCGGGCTGCAGCAG
TCGCGGCTGCGTGGCCGCATGGAAGAAGTTTACCTCGACGCCCGCCATAT
CCCGCCGACGCCGGCCGAGCCGCCGCTGGCTGTCATTGGCGCGGCAAGCG
GCGGCGACGACGACGCGGGGATTCTGATTCCGTTTGTAAACGAGGAAGAG
GAAGAGCGGGAGGCGGCAGCGCGGGCGGAGGCGGAGGCGGCGGCGGTCGC
CGCTGCGGCGGCGGCGGCAGTGGAGCGGCGGCTGGAGGAGGCGCTGGGAC
GGCTCAAGCCGGCGCACGCCGTGGCGTTCCGGCAGCGGCTGGGCCGGGAG
GGCGGGCTGGTGCCGGCAGTGACGATGCCCGGCGGCTTCATCGACGAGGG
GCTGCTGGCGGCATATGCGCAGCAGGCGCTCATGATGCCGGCGCACCTGC
CGCTGCCGATCCCACTGCCACCTCACCTGCGTCACGTCGCGCCGCCGCCG
CAGCAGGTGCAGCAGCCGCCGCCGGGGCAGCAGCAAATGCAGCCGCCGCC
GCAGCAGATGATGCAACAGATGGCTCCGCAGCAGATGCAGCAAATGCCGC
TACCGCAGATGGTCTACACGAACGGCCAAATGGTCTATGCGACGTCCCAA
GGCATGATGACGACGACGGGGATGGCGCCGCCACCGCATCAGCAGCAAGT
GGCCGTGGTGCCGGGAACCGCGTCCGTTTACATGCCACCGCTGCAGCAGC
AGCTGCCGCAAATGGCGCCGGCGCCGCCCGGCTACATGGCGGCACCCCCG
CAGCAGCAGCAGCAGGTGCCGGGAGGATATGTGATGCAAATGCCGGGCGC
GCCGCCGATGCAGATGCAGCCGGGGCAGCCTGGTCAGCCGGGCCAGCCGT
ACCAGATGCCGCCGGCGCCGTATTACTACACTACGCCGCAACAGCAGCAG
CCGCTGCAAATGGCGCCGTCGCCAGGGCAGTACGTCATGGCCCCGCCGCA
CCAGCAGCAGCCACCGCCGCAGCAGCCGCCGCAGCCGCCACGGCGGCCGC
CGGAGCGCTCGCCGTCCCCGCCGGGGCACCGCCGATACGACGACCGCTAC
GGCGACAGCGACCGCGGCGGCGGCGGCGGCCGGTACGGCGACGGCCGGGA
CCGTGACGAAGGCCGGGACCAGGACCGCGCAGGCGGCGGCGGCCGCAGCG
ACCGGGACCGCGGCGAACACCAGGAGCGGCCGATGACAGCGGCGCTGGCG
GCGCGGCGGAAGACCATCCCATGCGAGTTCTTCGGCAAGCCCGGCGGCTG
CCGCCGCGGCGACAGCTGCATGTTTCTGCACGACGCCGAGCGCTGCAAGG
CCCTGCCGCAGCGGCCAGGCCGCGGTTTCGCCGGGCGGGGGCCGTCGCGC
TGAGCTGTCGGCCGCTTGCACCGATAAGATAAGAGAGCCGCATAAAGTTT
TCATGTGTGCAATGGGGTGTTCGTGTTGGTCGGCTGGTCAACTCATGGAC
GCCGTGACAAACCCATAGTCTCGAAAGGCGAAGGTGGTAGCGGCGCCGTG
CTCATTCAATGACACAAGGTCTCCGCCTGCCAGAAAGGGAGGAAAAGACA
GGAACGGAGGAAATTTTCGTCGAGTGGTAGTGGACTGAAGACAGATTAGC
GGGCGCAAAACCTGGACTTGGGAGAGGCCGAAGGATAAGGTTCAAACGGG
GTGTGCACCATGGTAAACACACGAAGGAAAATATGAAATGCCGTCTACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig837:5811..7859+

>mRNA_P-wetherbeei_contig837.3.1 ID=mRNA_P-wetherbeei_contig837.3.1|Name=mRNA_P-wetherbeei_contig837.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1635bp|location=Sequence derived from alignment at P-wetherbeei_contig837:5811..7859+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGGGCGGACGCACGGTGCGCCACACGGCGCCGCCGGCGCGGCCGC
AGCGGCGGCATCGGCGGCTACTGCAGCAGGCCACAAGACCGCCGCCGGGA
AGCCGACTGCGCCGAGTGCTGGTGGCGGGGCGGCCTCTGCCGCGGCAGCC
GCGGCGGCGGCCGAGGCGGAGAAGCGGCGGCGTCTGCTGCGGTGGCGGGT
GCCGGCGGCGCTCGACCTGCGGTTTCTGCCGGCGGACCAGCGCGTGGTGG
AGGTGGCGAGTGAGGAAGTCGGGCTGCAGCAGTCGCGGCTGCGTGGCCGC
ATGGAAGAAGTTTACCTCGACGCCCGCCATATCCCGCCGACGCCGGCCGA
GCCGCCGCTGGCTGTCATTGGCGCGGCAAGCGGCGGCGACGACGACGCGG
GGATTCTGATTCCGTTTGTAAACGAGGAAGAGGAAGAGCGGGAGGCGGCA
GCGCGGGCGGAGGCGGAGGCGGCGGCGGTCGCCGCTGCGGCGGCGGCGGC
AGTGGAGCGGCGGCTGGAGGAGGCGCTGGGACGGCTCAAGCCGGCGCACG
CCGTGGCGTTCCGGCAGCGGCTGGGCCGGGAGGGCGGGCTGGTGCCGGCA
GTGACGATGCCCGGCGGCTTCATCGACGAGGGGCTGCTGGCGGCATATGC
GCAGCAGGCGCTCATGATGCCGGCGCACCTGCCGCTGCCGATCCCACTGC
CACCTCACCTGCGTCACGTCGCGCCGCCGCCGCAGCAGGTGCAGCAGCCG
CCGCCGGGGCAGCAGCAAATGCAGCCGCCGCCGCAGCAGATGATGCAACA
GATGGCTCCGCAGCAGATGCAGCAAATGCCGCTACCGCAGATGGTCTACA
CGAACGGCCAAATGGTCTATGCGACGTCCCAAGGCATGATGACGACGACG
GGGATGGCGCCGCCACCGCATCAGCAGCAAGTGGCCGTGGTGCCGGGAAC
CGCGTCCGTTTACATGCCACCGCTGCAGCAGCAGCTGCCGCAAATGGCGC
CGGCGCCGCCCGGCTACATGGCGGCACCCCCGCAGCAGCAGCAGCAGGTG
CCGGGAGGATATGTGATGCAAATGCCGGGCGCGCCGCCGATGCAGATGCA
GCCGGGGCAGCCTGGTCAGCCGGGCCAGCCGTACCAGATGCCGCCGGCGC
CGTATTACTACACTACGCCGCAACAGCAGCAGCCGCTGCAAATGGCGCCG
TCGCCAGGGCAGTACGTCATGGCCCCGCCGCACCAGCAGCAGCCACCGCC
GCAGCAGCCGCCGCAGCCGCCACGGCGGCCGCCGGAGCGCTCGCCGTCCC
CGCCGGGGCACCGCCGATACGACGACCGCTACGGCGACAGCGACCGCGGC
GGCGGCGGCGGCCGGTACGGCGACGGCCGGGACCGTGACGAAGGCCGGGA
CCAGGACCGCGCAGGCGGCGGCGGCCGCAGCGACCGGGACCGCGGCGAAC
ACCAGGAGCGGCCGATGACAGCGGCGCTGGCGGCGCGGCGGAAGACCATC
CCATGCGAGTTCTTCGGCAAGCCCGGCGGCTGCCGCCGCGGCGACAGCTG
CATGTTTCTGCACGACGCCGAGCGCTGCAAGGCCCTGCCGCAGCGGCCAG
GCCGCGGTTTCGCCGGGCGGGGGCCGTCGCGCTGA
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