mRNA_P-wetherbeei_contig837.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig837.2.1
Unique NamemRNA_P-wetherbeei_contig837.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig837.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig837contigP-wetherbeei_contig837:3288..5701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2074
Hectar predicted targeting categoryother localisation
Exons2
Cds size1632
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187036.09-UTR-P-wetherbeei_contig837:3287..37271683187036.09-UTR-P-wetherbeei_contig837:3287..3727Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig837 3288..3727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187036.1004722-CDS-P-wetherbeei_contig837:3727..42461683187036.1004722-CDS-P-wetherbeei_contig837:3727..4246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig837 3728..4246 +
1683187036.1101565-CDS-P-wetherbeei_contig837:4588..57011683187036.1101565-CDS-P-wetherbeei_contig837:4588..5701Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig837 4589..5701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig837.2.1prot_P-wetherbeei_contig837.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig837 3728..5701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig837.2.1

>prot_P-wetherbeei_contig837.2.1 ID=prot_P-wetherbeei_contig837.2.1|Name=mRNA_P-wetherbeei_contig837.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=544bp
MTAPRRNSCLNAARKPFAFLLEGRALEKWSQTAMWSDRRLTQSVPIPRRR
RLPPPRGHCRCPPPAAARCFCPSLALASLPSPRSCPQVESRALCLEVLWR
SREREDCTRAFVALGGLRLLRHWLFDLHAAMLKAAAAAAARERDKDKAAL
LPQERPPQPGHLALLVLMLEVIRILPVDMASLRPSQLAKRVMASKGVTAD
PAVAALVKDIRARWKPVARATEPAAARAVEQLHARKLREAERESAAKRRE
TAAAAEPGEAAAAERAAERERQRQRREEEREAERRRVAAARTAGAAAAAA
GAGTGAVTAAGGGGGGKAATAGGGNAAGGNASGKRALAAGDGASSPAGAA
SRPAKKNRVVRLDDAGLMAVGGRPAVSKAVAVAAAGGAAAPASVGARAAA
EAAKGPTAEDFDGDGFFIGGDDDEFAGSEFLSDAADFMDDDLVVGTSGFV
GDVSGGGGVTTAEAAAIAALSASAAAAAEVAPEPMAVEEANNSAGAAAGG
GDGGGKHTTKSRRSIHWADDQGLPLRAFRIFTIEPKDDIPEEED
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mRNA from alignment at P-wetherbeei_contig837:3288..5701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig837.2.1 ID=mRNA_P-wetherbeei_contig837.2.1|Name=mRNA_P-wetherbeei_contig837.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2414bp|location=Sequence derived from alignment at P-wetherbeei_contig837:3288..5701+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGAGCGTGGTCGACGGGACGGGGGCCGTCGCGTCCCCGCCGCACGTAG
GCACTCTGGTGCAAGTCATGTTGAATGCCAGAAACGTGAGTTCTGAATCC
ACCAATCAGCACGCTCGGAGAAAGAAAAGCGGTATGTTGCTTGCTTGTTG
CGGCATTTCTTCTGAAAAAGGCAGCACACCGCGCCTCGTGCCGGGCTGCT
GGTTCCTAAAGGACGGACGGCACCGTGAAAGCAAAGGGCGAGCAAGGGGC
ACCTTCGAAACCCCCCTCAAAGACTGACAAAAGCAAGAGCTGGTCCCCAA
ACAGGGCAGAGGAGCAAAAGCCACTTTCCGTTGAAGTGGTAAACGCCAAG
CCGCTGCGGGAAAGCGATCCACCCAAGCAGATCGCTGAAAAGAAGGGGGA
TAAAGGGTTCCTGGAAAGGAAAGAGGGGGTTTGTTGGAAGATGACGGCTC
CGAGGCGAAACTCTTGCTTAAATGCCGCACGCAAGCCCTTTGCGTTCCTT
TTGGAGGGACGGGCGTTGGAGAAGTGGTCCCAAACCGCCATGTGGTCCGA
CAGAAGGCTGACGCAATCTGTTCCGATTCCACGCCGCCGGCGTCTGCCAC
CGCCACGCGGCCACTGCCGCTGCCCACCGCCCGCTGCCGCCCGTTGCTTC
TGTCCCTCTCTCGCGCTTGCCTCTTTGCCTTCTCCTCGCTCGTGCCCGCA
GGTGGAATCCCGTGCGCTGTGCCTCGAGGTGCTGTGGCGGTCGCGCGAGC
GCGAGGACTGCACCCGCGCTTTCGTGGCGCTCGGCGGTCTGCGGCTGCTG
CGACACTGGCTGTTCGACCTGCACGCCGCCATGCTCAAGGCCGCTGCCGC
CGCCGCCGCCAGGGAAAGGGACAAGGACAAGGCGGCACTGCTGCCGCAGG
AACGGCCGCCGCAACCGGGCCATCTGGCGCTGCTCGTGCTCATGCTCGAG
GTCATCCGGGTGAGTCGCGAGCGAGAGCCGTCGGGGGTAGAGTTGTTCTT
TTCTGATCGGTTTGCCGTTCCAATGTTAGCCTTTGATAGGCTCGCGTTCC
TTTTTCGTGTCTTCGTCTTTTCCGGAAACGGTTGCTCAAAGTTTTGGGTG
GCCGTTCCGGTGACGGTTCGATGCAGCTACCCGCACTGCGTCGAGTTGGC
TTCATGCATGCTGCCGTTCTTCCGACACTTTCTTTTTCGTTGTAGCCGTC
GGGACGTCTAGCTTCAGCTTTCTTCATAAGACTTGACGCTCCCTGTTTCC
CTTTTCCTCCGCTCTCAATATACCCTCCACCGAATCTCCGGGTCATCTCA
GATCCTCCCAGTGGACATGGCGAGCCTCCGCCCCTCCCAGCTGGCAAAAC
GGGTCATGGCCTCCAAGGGCGTCACCGCCGACCCGGCTGTTGCCGCCCTC
GTCAAGGACATCCGTGCCCGCTGGAAGCCCGTTGCGCGCGCCACCGAGCC
CGCCGCGGCGCGCGCCGTGGAGCAGCTGCACGCCCGCAAGCTGCGCGAGG
CGGAGCGCGAGTCGGCGGCCAAGCGGCGGGAGACAGCAGCGGCAGCGGAG
CCCGGCGAGGCGGCGGCCGCCGAGCGCGCCGCCGAGCGGGAGCGGCAACG
GCAGCGCCGCGAGGAGGAGCGAGAGGCGGAGCGGCGCCGGGTGGCCGCAG
CGCGGACGGCCGGCGCAGCGGCGGCGGCCGCGGGGGCCGGAACCGGTGCG
GTGACTGCTGCGGGTGGCGGTGGCGGTGGCAAGGCTGCGACAGCTGGTGG
CGGCAACGCGGCGGGCGGGAATGCTTCGGGAAAACGGGCTCTGGCGGCAG
GCGACGGGGCGTCCTCGCCGGCGGGGGCGGCTTCCCGGCCGGCGAAGAAG
AACCGCGTGGTGCGGCTGGACGACGCCGGTTTGATGGCGGTGGGGGGCCG
CCCGGCTGTCTCCAAGGCGGTGGCGGTTGCAGCAGCTGGGGGCGCAGCAG
CACCAGCCTCCGTCGGGGCGAGAGCTGCAGCGGAAGCGGCCAAGGGCCCG
ACGGCAGAAGATTTCGACGGCGACGGCTTCTTCATCGGCGGTGACGACGA
TGAGTTCGCCGGGTCTGAATTTCTGAGCGACGCGGCGGACTTTATGGATG
ACGATCTGGTGGTCGGGACGTCCGGCTTCGTCGGGGACGTGTCTGGCGGC
GGCGGCGTGACGACGGCAGAGGCGGCAGCGATCGCGGCCCTGTCTGCATC
GGCGGCGGCGGCGGCGGAGGTGGCACCCGAACCGATGGCGGTTGAGGAAG
CGAACAACAGCGCCGGCGCTGCTGCCGGCGGCGGCGACGGCGGCGGCAAG
CACACGACTAAGAGCCGGCGCAGTATCCACTGGGCTGACGACCAGGGCCT
GCCGCTGCGTGCCTTCCGTATCTTTACAATTGAACCCAAGGACGACATCC
CTGAGGAGGAAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig837:3288..5701+

>mRNA_P-wetherbeei_contig837.2.1 ID=mRNA_P-wetherbeei_contig837.2.1|Name=mRNA_P-wetherbeei_contig837.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1632bp|location=Sequence derived from alignment at P-wetherbeei_contig837:3288..5701+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCTCCGAGGCGAAACTCTTGCTTAAATGCCGCACGCAAGCCCTT
TGCGTTCCTTTTGGAGGGACGGGCGTTGGAGAAGTGGTCCCAAACCGCCA
TGTGGTCCGACAGAAGGCTGACGCAATCTGTTCCGATTCCACGCCGCCGG
CGTCTGCCACCGCCACGCGGCCACTGCCGCTGCCCACCGCCCGCTGCCGC
CCGTTGCTTCTGTCCCTCTCTCGCGCTTGCCTCTTTGCCTTCTCCTCGCT
CGTGCCCGCAGGTGGAATCCCGTGCGCTGTGCCTCGAGGTGCTGTGGCGG
TCGCGCGAGCGCGAGGACTGCACCCGCGCTTTCGTGGCGCTCGGCGGTCT
GCGGCTGCTGCGACACTGGCTGTTCGACCTGCACGCCGCCATGCTCAAGG
CCGCTGCCGCCGCCGCCGCCAGGGAAAGGGACAAGGACAAGGCGGCACTG
CTGCCGCAGGAACGGCCGCCGCAACCGGGCCATCTGGCGCTGCTCGTGCT
CATGCTCGAGGTCATCCGGATCCTCCCAGTGGACATGGCGAGCCTCCGCC
CCTCCCAGCTGGCAAAACGGGTCATGGCCTCCAAGGGCGTCACCGCCGAC
CCGGCTGTTGCCGCCCTCGTCAAGGACATCCGTGCCCGCTGGAAGCCCGT
TGCGCGCGCCACCGAGCCCGCCGCGGCGCGCGCCGTGGAGCAGCTGCACG
CCCGCAAGCTGCGCGAGGCGGAGCGCGAGTCGGCGGCCAAGCGGCGGGAG
ACAGCAGCGGCAGCGGAGCCCGGCGAGGCGGCGGCCGCCGAGCGCGCCGC
CGAGCGGGAGCGGCAACGGCAGCGCCGCGAGGAGGAGCGAGAGGCGGAGC
GGCGCCGGGTGGCCGCAGCGCGGACGGCCGGCGCAGCGGCGGCGGCCGCG
GGGGCCGGAACCGGTGCGGTGACTGCTGCGGGTGGCGGTGGCGGTGGCAA
GGCTGCGACAGCTGGTGGCGGCAACGCGGCGGGCGGGAATGCTTCGGGAA
AACGGGCTCTGGCGGCAGGCGACGGGGCGTCCTCGCCGGCGGGGGCGGCT
TCCCGGCCGGCGAAGAAGAACCGCGTGGTGCGGCTGGACGACGCCGGTTT
GATGGCGGTGGGGGGCCGCCCGGCTGTCTCCAAGGCGGTGGCGGTTGCAG
CAGCTGGGGGCGCAGCAGCACCAGCCTCCGTCGGGGCGAGAGCTGCAGCG
GAAGCGGCCAAGGGCCCGACGGCAGAAGATTTCGACGGCGACGGCTTCTT
CATCGGCGGTGACGACGATGAGTTCGCCGGGTCTGAATTTCTGAGCGACG
CGGCGGACTTTATGGATGACGATCTGGTGGTCGGGACGTCCGGCTTCGTC
GGGGACGTGTCTGGCGGCGGCGGCGTGACGACGGCAGAGGCGGCAGCGAT
CGCGGCCCTGTCTGCATCGGCGGCGGCGGCGGCGGAGGTGGCACCCGAAC
CGATGGCGGTTGAGGAAGCGAACAACAGCGCCGGCGCTGCTGCCGGCGGC
GGCGACGGCGGCGGCAAGCACACGACTAAGAGCCGGCGCAGTATCCACTG
GGCTGACGACCAGGGCCTGCCGCTGCGTGCCTTCCGTATCTTTACAATTG
AACCCAAGGACGACATCCCTGAGGAGGAAGAC
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