mRNA_P-wetherbeei_contig8349.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8349.1.1
Unique NamemRNA_P-wetherbeei_contig8349.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8349.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8349contigP-wetherbeei_contig8349:117..1989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1875
Hectar predicted targeting categoryother localisation
Exons1
Cds size1872
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.047862-CDS-P-wetherbeei_contig8349:116..19881683187035.047862-CDS-P-wetherbeei_contig8349:116..1988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8349 117..1988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8349.1.1prot_P-wetherbeei_contig8349.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8349 117..1988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8349.1.1

>prot_P-wetherbeei_contig8349.1.1 ID=prot_P-wetherbeei_contig8349.1.1|Name=mRNA_P-wetherbeei_contig8349.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=624bp
GLRREVRERGTRVEGELARARLEEELRRAAGASGGFGGDPAAVGAAVGAA
AEIGSVVDSEGGDWYKVLPVTGRRPAATAGGVGAAADAEWGGGRTSTTAQ
AAADGVSMPVRPAGGPEIVSGWDGGEEWDDRGQQGGRGSGGGSSNGGGAA
EEPWLGASVGLLAPPAPVLLQGCGNRRDWLPTDDDRVTSGDGPGVRPPRS
RTAAGAAELEAGRDGGALRVAANDSGQDIAVPPLHAVDGTGGGGGGSEDA
VADEQWVRMAGLMALKARMERDALRGAAVATDAISSVEPPPPPPSDSCGR
ELTLTSIHVGPAPQPAAASVPTAEVVGLLRDVLEQQRLAWEEARAATRAE
AEARAAAAAAAERLAKEREEHEAAAAVADKAVRELALRKAAEAAAPAAAA
AAAAAAAAAAVVVAPAEHDEAQPSASAPAPSPLPPPPKRFHSNLGRLLAG
GAAWRSLPLRAEGDFGRRYATTLGRVLGGGEDWQALPLAPAALVTPWQHS
HAPEGPVASGKAENEDGSGKDGSGSGGVGVDSVDAVLRRGHGGARDDVGR
SLMLGAEHFRAGAAAAAATARKAVEAAAAALASQAMQVAASSQTDAKVPA
APPATRPPPVPAAAPPAGGGQDGA
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mRNA from alignment at P-wetherbeei_contig8349:117..1989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8349.1.1 ID=mRNA_P-wetherbeei_contig8349.1.1|Name=mRNA_P-wetherbeei_contig8349.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1873bp|location=Sequence derived from alignment at P-wetherbeei_contig8349:117..1989+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTCCGGCGGGAAGTGCGGGAACGCGGCACGCGCGTGGAGGGCGAGCT
GGCACGGGCGCGGCTGGAAGAGGAGCTGCGGCGGGCGGCGGGAGCCAGTG
GCGGCTTTGGCGGCGATCCGGCGGCAGTGGGAGCGGCGGTGGGCGCCGCG
GCGGAGATTGGCAGCGTCGTCGATTCGGAGGGTGGCGATTGGTACAAGGT
GCTGCCGGTGACGGGGCGGCGGCCGGCAGCGACAGCAGGCGGCGTAGGAG
CCGCCGCTGACGCGGAGTGGGGCGGCGGCCGCACGTCGACGACGGCGCAA
GCGGCAGCGGACGGCGTCAGCATGCCGGTGCGCCCCGCCGGCGGGCCAGA
AATCGTTTCTGGCTGGGACGGTGGCGAAGAATGGGATGACCGAGGCCAAC
AGGGCGGCCGCGGCAGCGGCGGCGGCAGCAGCAATGGCGGCGGCGCGGCG
GAGGAGCCGTGGCTGGGAGCCAGCGTCGGGCTGCTGGCGCCGCCGGCACC
GGTGCTTTTGCAGGGCTGTGGCAATAGGCGTGACTGGCTGCCGACCGATG
ACGACAGGGTGACGTCCGGCGACGGCCCGGGCGTGCGGCCACCACGCTCC
CGGACGGCGGCCGGCGCTGCCGAGTTGGAGGCGGGGCGGGACGGTGGCGC
TTTGCGGGTCGCGGCGAATGACAGTGGACAGGACATCGCCGTCCCGCCGC
TGCACGCTGTGGACGGCACGGGCGGCGGCGGCGGCGGCAGCGAGGACGCT
GTTGCCGACGAGCAGTGGGTGCGGATGGCGGGGCTTATGGCGCTCAAAGC
CCGGATGGAGCGCGATGCCCTGAGGGGTGCCGCCGTCGCCACGGACGCCA
TTTCTTCGGTGGAACCGCCGCCGCCGCCGCCGTCCGACAGCTGCGGCCGG
GAGCTCACGCTGACCTCCATCCACGTGGGTCCAGCGCCGCAGCCGGCCGC
TGCCTCCGTCCCCACCGCTGAGGTGGTTGGGCTGCTTCGGGACGTGTTGG
AGCAGCAGCGGCTCGCATGGGAGGAGGCGCGGGCAGCGACACGTGCCGAG
GCCGAAGCGCGGGCGGCGGCAGCGGCGGCTGCCGAGCGGCTGGCGAAGGA
GCGCGAGGAGCACGAAGCGGCGGCGGCAGTGGCGGATAAGGCGGTGCGAG
AGTTGGCGTTGCGAAAGGCTGCAGAAGCTGCTGCTCCTGCTGCCGCTGCG
GCGGCTGCGGCAGCGGCGGCGGCGGCGGCGGTGGTGGTGGCGCCGGCAGA
GCACGATGAAGCGCAGCCTTCGGCGTCCGCGCCGGCACCGTCGCCGCTGC
CGCCGCCTCCAAAGCGTTTCCATTCCAATCTGGGGCGCCTTCTCGCTGGC
GGTGCAGCGTGGCGATCGCTCCCGCTGCGCGCCGAAGGCGATTTTGGCCG
GCGCTATGCCACGACCCTCGGCCGCGTTCTGGGGGGCGGCGAGGACTGGC
AGGCGTTGCCCTTGGCGCCGGCCGCACTGGTGACGCCATGGCAGCACAGC
CACGCTCCCGAAGGGCCTGTTGCTTCTGGAAAGGCAGAAAACGAAGACGG
CAGCGGCAAAGACGGCAGCGGTTCTGGCGGCGTCGGCGTAGACAGCGTCG
ATGCGGTTCTGCGGCGGGGCCACGGCGGCGCTCGGGATGACGTTGGCCGG
TCGCTCATGCTCGGGGCAGAACACTTTCGTGCCGGCGCTGCGGCGGCGGC
GGCGACTGCAAGAAAGGCTGTCGAGGCCGCGGCGGCCGCTCTAGCATCGC
AGGCGATGCAGGTGGCGGCTTCGTCGCAGACAGATGCGAAGGTGCCAGCA
GCACCGCCAGCCACGCGGCCGCCGCCCGTGCCGGCGGCAGCGCCGCCTGC
AGGAGGAGGGCAGGACGGAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8349:117..1989+

>mRNA_P-wetherbeei_contig8349.1.1 ID=mRNA_P-wetherbeei_contig8349.1.1|Name=mRNA_P-wetherbeei_contig8349.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1872bp|location=Sequence derived from alignment at P-wetherbeei_contig8349:117..1989+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTCCGGCGGGAAGTGCGGGAACGCGGCACGCGCGTGGAGGGCGAGCT
GGCACGGGCGCGGCTGGAAGAGGAGCTGCGGCGGGCGGCGGGAGCCAGTG
GCGGCTTTGGCGGCGATCCGGCGGCAGTGGGAGCGGCGGTGGGCGCCGCG
GCGGAGATTGGCAGCGTCGTCGATTCGGAGGGTGGCGATTGGTACAAGGT
GCTGCCGGTGACGGGGCGGCGGCCGGCAGCGACAGCAGGCGGCGTAGGAG
CCGCCGCTGACGCGGAGTGGGGCGGCGGCCGCACGTCGACGACGGCGCAA
GCGGCAGCGGACGGCGTCAGCATGCCGGTGCGCCCCGCCGGCGGGCCAGA
AATCGTTTCTGGCTGGGACGGTGGCGAAGAATGGGATGACCGAGGCCAAC
AGGGCGGCCGCGGCAGCGGCGGCGGCAGCAGCAATGGCGGCGGCGCGGCG
GAGGAGCCGTGGCTGGGAGCCAGCGTCGGGCTGCTGGCGCCGCCGGCACC
GGTGCTTTTGCAGGGCTGTGGCAATAGGCGTGACTGGCTGCCGACCGATG
ACGACAGGGTGACGTCCGGCGACGGCCCGGGCGTGCGGCCACCACGCTCC
CGGACGGCGGCCGGCGCTGCCGAGTTGGAGGCGGGGCGGGACGGTGGCGC
TTTGCGGGTCGCGGCGAATGACAGTGGACAGGACATCGCCGTCCCGCCGC
TGCACGCTGTGGACGGCACGGGCGGCGGCGGCGGCGGCAGCGAGGACGCT
GTTGCCGACGAGCAGTGGGTGCGGATGGCGGGGCTTATGGCGCTCAAAGC
CCGGATGGAGCGCGATGCCCTGAGGGGTGCCGCCGTCGCCACGGACGCCA
TTTCTTCGGTGGAACCGCCGCCGCCGCCGCCGTCCGACAGCTGCGGCCGG
GAGCTCACGCTGACCTCCATCCACGTGGGTCCAGCGCCGCAGCCGGCCGC
TGCCTCCGTCCCCACCGCTGAGGTGGTTGGGCTGCTTCGGGACGTGTTGG
AGCAGCAGCGGCTCGCATGGGAGGAGGCGCGGGCAGCGACACGTGCCGAG
GCCGAAGCGCGGGCGGCGGCAGCGGCGGCTGCCGAGCGGCTGGCGAAGGA
GCGCGAGGAGCACGAAGCGGCGGCGGCAGTGGCGGATAAGGCGGTGCGAG
AGTTGGCGTTGCGAAAGGCTGCAGAAGCTGCTGCTCCTGCTGCCGCTGCG
GCGGCTGCGGCAGCGGCGGCGGCGGCGGCGGTGGTGGTGGCGCCGGCAGA
GCACGATGAAGCGCAGCCTTCGGCGTCCGCGCCGGCACCGTCGCCGCTGC
CGCCGCCTCCAAAGCGTTTCCATTCCAATCTGGGGCGCCTTCTCGCTGGC
GGTGCAGCGTGGCGATCGCTCCCGCTGCGCGCCGAAGGCGATTTTGGCCG
GCGCTATGCCACGACCCTCGGCCGCGTTCTGGGGGGCGGCGAGGACTGGC
AGGCGTTGCCCTTGGCGCCGGCCGCACTGGTGACGCCATGGCAGCACAGC
CACGCTCCCGAAGGGCCTGTTGCTTCTGGAAAGGCAGAAAACGAAGACGG
CAGCGGCAAAGACGGCAGCGGTTCTGGCGGCGTCGGCGTAGACAGCGTCG
ATGCGGTTCTGCGGCGGGGCCACGGCGGCGCTCGGGATGACGTTGGCCGG
TCGCTCATGCTCGGGGCAGAACACTTTCGTGCCGGCGCTGCGGCGGCGGC
GGCGACTGCAAGAAAGGCTGTCGAGGCCGCGGCGGCCGCTCTAGCATCGC
AGGCGATGCAGGTGGCGGCTTCGTCGCAGACAGATGCGAAGGTGCCAGCA
GCACCGCCAGCCACGCGGCCGCCGCCCGTGCCGGCGGCAGCGCCGCCTGC
AGGAGGAGGGCAGGACGGAGCG
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