mRNA_P-wetherbeei_contig8285.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8285.2.1
Unique NamemRNA_P-wetherbeei_contig8285.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8285.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8285contigP-wetherbeei_contig8285:1319..2736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1078
Hectar predicted targeting categorymitochondrion
Exons2
Cds size804
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187031.2554314-UTR-P-wetherbeei_contig8285:1318..15691683187031.2554314-UTR-P-wetherbeei_contig8285:1318..1569Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8285 1319..1569 -
1683187031.2923305-UTR-P-wetherbeei_contig8285:2713..27361683187031.2923305-UTR-P-wetherbeei_contig8285:2713..2736Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8285 2714..2736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187031.274931-CDS-P-wetherbeei_contig8285:1569..17651683187031.274931-CDS-P-wetherbeei_contig8285:1569..1765Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8285 1570..1765 -
1683187031.2840505-CDS-P-wetherbeei_contig8285:2105..27131683187031.2840505-CDS-P-wetherbeei_contig8285:2105..2713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8285 2106..2713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8285.2.1prot_P-wetherbeei_contig8285.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8285 1570..2713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8285.2.1

>prot_P-wetherbeei_contig8285.2.1 ID=prot_P-wetherbeei_contig8285.2.1|Name=mRNA_P-wetherbeei_contig8285.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
MPPWMGLMLPKSAGTELRWRKTRLSTKRTPCQRTMPPPSTPTHLTSPPRR
RQRRRRPRWQQQWQRLGRRVRQGRQHWQRLRRRRWRGNPTTTAAAAARRA
RGGQTPARPRKLESLPSLLLPSLMVPPSALPPFRTGTRKTTSSCGRSRCS
RTSRNAAGRRWRQHSPTASARWWRSRGCWRGRRPWRRWRTTRSRMRCRSP
CPRRCMPSSNCWGHLSQAWKSAWRGASPPGSARCVRRPSTAAMVAASAAT
AAAARRRWLGRLEQGQR*
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mRNA from alignment at P-wetherbeei_contig8285:1319..2736-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8285.2.1 ID=mRNA_P-wetherbeei_contig8285.2.1|Name=mRNA_P-wetherbeei_contig8285.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1418bp|location=Sequence derived from alignment at P-wetherbeei_contig8285:1319..2736- (Phaeothamnion wetherbeei SAG_119_79)
TTCCGCCGTGGTCACCGCCGCGGATGCCGCCGTGGATGGGACTGATGCTG
CCGAAGTCGGCTGGGACGGAGCTGAGGTGGAGGAAGACGAGGCTTTCGAC
GAAGCGGACGCCATGCCAGCGGACGATGCCGCCGCCGTCGACACCGACAC
ACCTGACGAGCCCGCCGCGCCGACGGCAGCGGCGGCGGCGGCCGAGATGG
CAGCAGCAGTGGCAACGGTTGGGGCGTCGGGTGCGGCAGGGGCGGCAGCA
TTGGCAGCGGCTGCGGCGGCGGCGTTGGCGGGGCAATCCAACCACAACAG
CTGCAGCGGCGGCTCGGCGGGCCCGAGGGGGCCAAACGCCGGCACGGCCG
CGGAAGTTGGAGTCGCTGCCGTCGCTGCTGCTGCCGTCGCTGATGGTGCC
GCCGTCGGCACTGCCGCCGTTCCGCACAGGCACTCGGAAGACGACGAGCT
CTTGCGGGAGGAGCAGGTGCAGCAGGACTTCCAGGAATGCTGCCGGCAGG
CGCTGGCGGCAGCATTCCCCAACGGCGTCGGCCCGATGGTGGAGAAGTCG
CGGGTGCTGGCGCGGGCGGCGACCATGGCGGAGATGGCGGACGACGAGGA
GCAGAATGAGATGCAGATCGCCATGTCCAAGGTGAGTTATAGGATGGGTG
AAGCGCAAAATGGCCAGGAAGTGCACGTGCTAACGAGTGGGGATATTAAA
AATTCAAGAGGGAAGGAAGCGGTGGGAGGTTGGGGCGTGGGCGGTGGCCG
CCCAACGAGAAACTTCGTGGCAACTGCTGGACGAAAGAGTCAAACATCCC
GAGACAGTTTGGGACTTGTCTTGGCCGGACCTAACCTCTTTTGAAGGACG
GAACAACCGTTCGGTTGGTACCTTAAATGATGTTGCACAGTTTCACCGCT
TGAGGCAGGGGCGAAAGGGAGCAGATCTGACCTTTCCCACGACCATCCAT
TGCCTATTCTTAACAAGACAGGAGGTGCATGCCATCTTCGAACTGCTGGG
GCCATCTTTCGCAAGCCTGGAAGAGCGCATGGAGAGGCGCATCGCCGCCG
GGTTCCGCGAGATGCGTGCGGCGGCCCTCGACGGCGGCGATGGTGGCGGC
CTCGGCGGCGACGGCGGCGGCAGCTCGACGGCGGTGGCTGGGGCGACTTG
AGCAAGGGCAGCGGTGACCGGGAGGATTCTTTGCACCGCTTCAGGCAGGC
GCCATCTTCCTCTGGCAGGAAGAATTGGCCAGTATCGTCTAGGAGTTTTT
TGGAAGCCGCAGGAGGTTCAGGAGGCACAGGTAGAACTCTACGAGCAGCA
CCCGCCTATTGACCATGAAAAAATTGATGCTGGAGTGTAAGAAGGCGGGG
ATGCAGTTGACTTGAGTGCAGTCAGCGGTCTAGCGGAGTCTCTTGATTAC
CCTCGACGGAGGCTGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8285:1319..2736-

>mRNA_P-wetherbeei_contig8285.2.1 ID=mRNA_P-wetherbeei_contig8285.2.1|Name=mRNA_P-wetherbeei_contig8285.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig8285:1319..2736- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGTGGATGGGACTGATGCTGCCGAAGTCGGCTGGGACGGAGCT
GAGGTGGAGGAAGACGAGGCTTTCGACGAAGCGGACGCCATGCCAGCGGA
CGATGCCGCCGCCGTCGACACCGACACACCTGACGAGCCCGCCGCGCCGA
CGGCAGCGGCGGCGGCGGCCGAGATGGCAGCAGCAGTGGCAACGGTTGGG
GCGTCGGGTGCGGCAGGGGCGGCAGCATTGGCAGCGGCTGCGGCGGCGGC
GTTGGCGGGGCAATCCAACCACAACAGCTGCAGCGGCGGCTCGGCGGGCC
CGAGGGGGCCAAACGCCGGCACGGCCGCGGAAGTTGGAGTCGCTGCCGTC
GCTGCTGCTGCCGTCGCTGATGGTGCCGCCGTCGGCACTGCCGCCGTTCC
GCACAGGCACTCGGAAGACGACGAGCTCTTGCGGGAGGAGCAGGTGCAGC
AGGACTTCCAGGAATGCTGCCGGCAGGCGCTGGCGGCAGCATTCCCCAAC
GGCGTCGGCCCGATGGTGGAGAAGTCGCGGGTGCTGGCGCGGGCGGCGAC
CATGGCGGAGATGGCGGACGACGAGGAGCAGAATGAGATGCAGATCGCCA
TGTCCAAGGAGGTGCATGCCATCTTCGAACTGCTGGGGCCATCTTTCGCA
AGCCTGGAAGAGCGCATGGAGAGGCGCATCGCCGCCGGGTTCCGCGAGAT
GCGTGCGGCGGCCCTCGACGGCGGCGATGGTGGCGGCCTCGGCGGCGACG
GCGGCGGCAGCTCGACGGCGGTGGCTGGGGCGACTTGAGCAAGGGCAGCG
GTGA
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