mRNA_P-wetherbeei_contig8274.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8274.1.3
Unique NamemRNA_P-wetherbeei_contig8274.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8274.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8274contigP-wetherbeei_contig8274:2..2854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000013925
PFAMsPHD_2,WHIM1
Model size1845
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.13e-05
EggNOG OGs2C7WC@1|root,2S337@2759|Eukaryota,1MENZ@121069|Pythiales
DescriptionSource PGD
Cds size1536
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8274.1.3prot_P-wetherbeei_contig8274.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8274 90..2633 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187030.793295-UTR-P-wetherbeei_contig8274:1..891683187030.793295-UTR-P-wetherbeei_contig8274:1..89Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8274 2..89 -
1683187030.8664668-UTR-P-wetherbeei_contig8274:2633..28541683187030.8664668-UTR-P-wetherbeei_contig8274:2633..2854Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8274 2634..2854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187030.8132596-CDS-P-wetherbeei_contig8274:89..3231683187030.8132596-CDS-P-wetherbeei_contig8274:89..323Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8274 90..323 -
1683187030.8247116-CDS-P-wetherbeei_contig8274:549..8411683187030.8247116-CDS-P-wetherbeei_contig8274:549..841Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8274 550..841 -
1683187030.8354201-CDS-P-wetherbeei_contig8274:1240..19321683187030.8354201-CDS-P-wetherbeei_contig8274:1240..1932Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8274 1241..1932 -
1683187030.846096-CDS-P-wetherbeei_contig8274:2220..23891683187030.846096-CDS-P-wetherbeei_contig8274:2220..2389Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8274 2221..2389 -
1683187030.8564692-CDS-P-wetherbeei_contig8274:2484..26331683187030.8564692-CDS-P-wetherbeei_contig8274:2484..2633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8274 2485..2633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8274.1.3

>prot_P-wetherbeei_contig8274.1.3 ID=prot_P-wetherbeei_contig8274.1.3|Name=mRNA_P-wetherbeei_contig8274.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=512bp
MESPPDSESLAVLHSRLLSEASVLKKNRAGDGGNPFSWWTSTLRRRVAIW
YAKLAVVNAVLEERAAKMSGSTTDNSNSESDFDDDNNGGGSGGACPVCEV
DAGGDQDGEGGLLACSGERCLANYHTGCLPRLPGLPAISEGDWLCPKCTA
AGDAGPPSEAEGSTAASFSAGAGEGDDGIGGGGGGGGDSGGGGTSDSGTS
GGTIGGGDAGGSGVAENDGGLPYDLTPAGQTRQRRRCLSQSTEELSVTAG
RLQLLLRNLGDDCPLRYGGGADGDNGSDGGSGGCTGGGGCEGGDDGDAAA
AYLALPVRHRVALLLALCEAAVDENHALKGGMDDMDSEDLRVRPLGVDSN
KAAYFWFEPLATDLRVYRQPTNGGGAHSGGGGEALGWDGEPSWEVVVDSL
EGLEALSKALEASGYAADKRLHAAMRPIVTNAREEHERRQRALLREEKKT
ALASVLRRKSSRRSKRTAKGGPDDSSGAEADGADDGREERARAVLQPPTQ
PPPPSPPSQAD*
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mRNA from alignment at P-wetherbeei_contig8274:2..2854-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8274.1.3 ID=mRNA_P-wetherbeei_contig8274.1.3|Name=mRNA_P-wetherbeei_contig8274.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2853bp|location=Sequence derived from alignment at P-wetherbeei_contig8274:2..2854- (Phaeothamnion wetherbeei SAG_119_79)
AAAGAGAGAGGCGTCAACCCTCGAAAGAAATCTTTGAGAACATCCGCCCG
CCAAAAAAGGCTTTCGCGACGTTCCAATTCAAACCGGCTGGGGACACCTC
GGGGATCAACGCGTACGGCAGCTCGGCCCTGGTTAGCGTCGCTCTCTTCT
TGCACGCGAATAGAGTCGCTCTCAAGCTCGGTGCGACGTGGAATGCGAGC
GTGCGGGACCTGGAGGAAGGGATGGAGTCGCCGCCGGACTCTGAATCCCT
CGCAGTGCTCCACTCGCGCCTCCTTTCCGAGGCCTCAGTTTTAAAAAAAA
ACCGGGCTGGCGATGGAGGCAACCCATTCTCGTGGTGGACATCAACCCTG
CGTCGTCGCGTTGCCATCTGGTACGTTTGGTCCCCGTCTCCCCACCGCAA
CCCTTTGGAAAGCGTGACATTCCACACAAACTCAGCGCAACCCTTATTTA
ATTGTTTCGCGGCAGGTACGCAAAGCTCGCCGTCGTGAACGCGGTGCTCG
AAGAGCGCGCAGCGAAAATGAGCGGCTCGACAACCGATAACAGCAACAGC
GAGAGCGATTTTGACGACGACAACAATGGCGGCGGCAGTGGCGGTGCCTG
CCCCGTCTGCGAAGTAGATGCCGGCGGTGACCAGGTGAGGAAGTTGGCGC
CTAGTTTTTTAAGCTTACATCTGACTTTTCAACTTGCTTTTCGCTTGAGG
AAACATGTTGGTAGTCTGCGGTCATAGCAACCGCTTTCTCCAGAGATGCA
TTGAAGCATGCCGAATGTACGCTCAGCCAGCTTCGGCGATTCGGTGCCTC
GCGCGCGGATTGTCGCCCCATCTTTGGAAATAGCCCGCTGTCATCGTCTA
CATCAATTTGGCAGCTTCCTCCAGGAACAACGATCCATTTTTCTGGCTGT
CGCTCCCCCGGCTTTTCCGCAGGACGGCGAGGGCGGGCTGCTCGCCTGCA
GCGGCGAGCGCTGCCTGGCGAATTACCACACGGGTTGCCTGCCGAGGCTG
CCCGGCCTTCCCGCCATATCTGAAGGCGACTGGCTGTGCCCGAAATGCAC
GGCAGCCGGCGATGCTGGTCCGCCTTCTGAGGCGGAGGGGAGCACCGCTG
CCAGCTTTAGCGCCGGAGCCGGTGAGGGCGACGACGGCATTGGCGGCGGC
GGCGGTGGTGGCGGCGATAGCGGCGGCGGCGGTACCAGCGACAGCGGCAC
TAGCGGCGGCACCATCGGCGGCGGCGACGCCGGCGGGAGCGGCGTCGCCG
AAAACGACGGAGGGTTGCCATACGACCTGACTCCCGCCGGTCAGACGCGC
CAGCGGCGTCGATGCCTGTCCCAGTCGACTGAAGAGCTTTCCGTCACAGC
GGGGCGGCTGCAGCTCCTGCTGCGGAACCTAGGCGATGACTGCCCGCTGC
GGTATGGCGGCGGCGCCGACGGCGACAACGGCAGCGATGGCGGCAGCGGT
GGTTGCACCGGCGGCGGAGGGTGTGAAGGCGGCGATGACGGCGATGCAGC
GGCGGCATATCTTGCATTGCCAGTGCGCCACCGAGTGGCGCTGCTCTTGG
CGCTCTGCGAGGCAGCCGTGGACGAGAACCATGCGTTGAAGGGTGGTATG
GATGACATGGACAGGTGAGAGAGCGCAGTCTTGCTTGTGGGGTGTTCCTA
TCATTGTTGCGGTCGTCGAAACGAGATCTGCTCTGTTAGTGGTATGACTG
CTGCCATCTGCTTGCTCTGTTCTCAGGATACACTGTGGGAAGCTACCTGC
CATAGCTTTTTCCCTTTCCGTGCGTGCAAATGGAAAGGACCAGATAAATC
TCCCCGGCGGCAGCGTCCGGGTGGGCTACGCTGTAGCGGCCAATAGCAAG
CAGCATTTTGACAGAGGAGGGCTCCTGCGTTTGCACCGTTTGCGCAGACT
CCATTCTGTTGTCACCCGCCCTCCTGCCCCGTCACACATCTCTCCGTTCG
CACTTTTCTCGAGTGGGCATATCTTCTTTTGATGCGGAATCTGGTCTTCA
AAACCCTGCGCAGCGAGGACCTGCGTGTGCGGCCGCTGGGCGTCGACTCG
AACAAGGCGGCCTACTTTTGGTTCGAGCCGCTCGCAACAGATCTTCGTGT
GTACCGGCAACCGACGAATGGCGGCGGCGCCCACAGTGGCGGCGGCGGCG
AGGCTTTGGGGTGGGACGGAGAACCGTCGTGGGAAGTAGTGGTGGACTCG
CTAGAGGGACTGGAGGCGCTGTCGAAGGCACTGGAGGCAAGCGGCTACGC
CGCGGATAAGCGGCTGCATGCCGCGATGCGGCCAATCGTGACGAACGCGC
GGGAGGTGAGAAGGAGAGGTTATTCAACGTTTTCTCCTTGAGTTCAAAAG
ACACTTTATTTGCATGTTTTGTGTAGTCATTTTGCCTCTGATTGCCCGAC
TGGGCATTAAGTTACGACCCTTTTTAAGTTCTGATATTCAATTTCCTGAC
TCCAAAGAGCGCACTGAAGTAGGCACTCCGTCTCCGTGCTGTCCGGATGA
CGCAGTTTCCCCTCTTCCTGGGTCCGGGCAGGAGCACGAGCGGCGTCAGC
GCGCCCTTTTGCGTGAGGAGAAAAAAACCGCGCTTGCGTCCGTCCTACGG
CGCAAATCGAGCCGCCGCAGCAAGCGGACAGCCAAGGGCGGACCGGACGA
CAGCAGCGGCGCAGAAGCAGACGGCGCAGACGACGGCCGAGAGGAGAGGG
CGAGAGCCGTTTTACAGCCGCCGACACAGCCGCCGCCGCCTTCGCCGCCG
TCGCAGGCTGACTAATGGGCGCAGCAATGGCAGCCGCACGAGCGGTGGTC
ACAGTCTAGCCGGCCGTGGGCGAGCTGACCTGACGGTTGACTTGGGGCTG
CTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8274:2..2854-

>mRNA_P-wetherbeei_contig8274.1.3 ID=mRNA_P-wetherbeei_contig8274.1.3|Name=mRNA_P-wetherbeei_contig8274.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1536bp|location=Sequence derived from alignment at P-wetherbeei_contig8274:2..2854- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTCGCCGCCGGACTCTGAATCCCTCGCAGTGCTCCACTCGCGCCT
CCTTTCCGAGGCCTCAGTTTTAAAAAAAAACCGGGCTGGCGATGGAGGCA
ACCCATTCTCGTGGTGGACATCAACCCTGCGTCGTCGCGTTGCCATCTGG
TACGCAAAGCTCGCCGTCGTGAACGCGGTGCTCGAAGAGCGCGCAGCGAA
AATGAGCGGCTCGACAACCGATAACAGCAACAGCGAGAGCGATTTTGACG
ACGACAACAATGGCGGCGGCAGTGGCGGTGCCTGCCCCGTCTGCGAAGTA
GATGCCGGCGGTGACCAGGACGGCGAGGGCGGGCTGCTCGCCTGCAGCGG
CGAGCGCTGCCTGGCGAATTACCACACGGGTTGCCTGCCGAGGCTGCCCG
GCCTTCCCGCCATATCTGAAGGCGACTGGCTGTGCCCGAAATGCACGGCA
GCCGGCGATGCTGGTCCGCCTTCTGAGGCGGAGGGGAGCACCGCTGCCAG
CTTTAGCGCCGGAGCCGGTGAGGGCGACGACGGCATTGGCGGCGGCGGCG
GTGGTGGCGGCGATAGCGGCGGCGGCGGTACCAGCGACAGCGGCACTAGC
GGCGGCACCATCGGCGGCGGCGACGCCGGCGGGAGCGGCGTCGCCGAAAA
CGACGGAGGGTTGCCATACGACCTGACTCCCGCCGGTCAGACGCGCCAGC
GGCGTCGATGCCTGTCCCAGTCGACTGAAGAGCTTTCCGTCACAGCGGGG
CGGCTGCAGCTCCTGCTGCGGAACCTAGGCGATGACTGCCCGCTGCGGTA
TGGCGGCGGCGCCGACGGCGACAACGGCAGCGATGGCGGCAGCGGTGGTT
GCACCGGCGGCGGAGGGTGTGAAGGCGGCGATGACGGCGATGCAGCGGCG
GCATATCTTGCATTGCCAGTGCGCCACCGAGTGGCGCTGCTCTTGGCGCT
CTGCGAGGCAGCCGTGGACGAGAACCATGCGTTGAAGGGTGGTATGGATG
ACATGGACAGCGAGGACCTGCGTGTGCGGCCGCTGGGCGTCGACTCGAAC
AAGGCGGCCTACTTTTGGTTCGAGCCGCTCGCAACAGATCTTCGTGTGTA
CCGGCAACCGACGAATGGCGGCGGCGCCCACAGTGGCGGCGGCGGCGAGG
CTTTGGGGTGGGACGGAGAACCGTCGTGGGAAGTAGTGGTGGACTCGCTA
GAGGGACTGGAGGCGCTGTCGAAGGCACTGGAGGCAAGCGGCTACGCCGC
GGATAAGCGGCTGCATGCCGCGATGCGGCCAATCGTGACGAACGCGCGGG
AGGAGCACGAGCGGCGTCAGCGCGCCCTTTTGCGTGAGGAGAAAAAAACC
GCGCTTGCGTCCGTCCTACGGCGCAAATCGAGCCGCCGCAGCAAGCGGAC
AGCCAAGGGCGGACCGGACGACAGCAGCGGCGCAGAAGCAGACGGCGCAG
ACGACGGCCGAGAGGAGAGGGCGAGAGCCGTTTTACAGCCGCCGACACAG
CCGCCGCCGCCTTCGCCGCCGTCGCAGGCTGACTAA
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