mRNA_P-wetherbeei_contig8265.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8265.1.1
Unique NamemRNA_P-wetherbeei_contig8265.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8265.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8265contigP-wetherbeei_contig8265:320..616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1296416.JACB01000026_gene3952
PFAMsBig_5,CBM_3,Cytochrom_C,Cytochrom_D1,PKD
Model size297
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.11e-07
EggNOG OGsCOG1858@1|root,COG3209@1|root,COG3291@1|root,COG3391@1|root,COG4733@1|root,COG5276@1|root,COG1858@2|Bacteria,COG3209@2|Bacteria,COG3291@2|Bacteria,COG3391@2|Bacteria,COG4733@2|Bacteria,COG5276@2|Bacteria,4NIPP@976|Bacteroidetes,1I7A8@117743|Flavobacteriia,2YKAC@290174|Aquimarina
DescriptionCellulose binding domain
Cds size297
COG categoryMP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187030.3788373-CDS-P-wetherbeei_contig8265:319..6161683187030.3788373-CDS-P-wetherbeei_contig8265:319..616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8265 320..616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8265.1.1prot_P-wetherbeei_contig8265.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8265 320..616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8265.1.1

>prot_P-wetherbeei_contig8265.1.1 ID=prot_P-wetherbeei_contig8265.1.1|Name=mRNA_P-wetherbeei_contig8265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
PNITDKEPPQVAANALGSGRTTKAIAVAEDPYGQSMSLLWDFGDGTPAVA
GNFGQVVSHTYAFVGNFSIMARVQTTDGRNAATSIDAGITPPKPFLLSV
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mRNA from alignment at P-wetherbeei_contig8265:320..616-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8265.1.1 ID=mRNA_P-wetherbeei_contig8265.1.1|Name=mRNA_P-wetherbeei_contig8265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig8265:320..616- (Phaeothamnion wetherbeei SAG_119_79)
CCCAACATCACCGACAAGGAACCGCCGCAGGTCGCCGCCAACGCCCTCGG
CTCCGGGCGCACGACGAAGGCGATCGCGGTTGCCGAGGATCCCTACGGGC
AGTCGATGAGCCTGCTCTGGGACTTCGGTGACGGCACCCCCGCGGTCGCC
GGCAACTTCGGCCAGGTCGTGTCGCACACCTACGCGTTCGTCGGCAACTT
CTCGATCATGGCCAGGGTGCAGACCACCGACGGTCGCAACGCGGCGACGA
GCATCGATGCCGGCATCACCCCACCCAAGCCGTTCCTGCTGTCCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8265:320..616-

>mRNA_P-wetherbeei_contig8265.1.1 ID=mRNA_P-wetherbeei_contig8265.1.1|Name=mRNA_P-wetherbeei_contig8265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig8265:320..616- (Phaeothamnion wetherbeei SAG_119_79)
CCCAACATCACCGACAAGGAACCGCCGCAGGTCGCCGCCAACGCCCTCGG
CTCCGGGCGCACGACGAAGGCGATCGCGGTTGCCGAGGATCCCTACGGGC
AGTCGATGAGCCTGCTCTGGGACTTCGGTGACGGCACCCCCGCGGTCGCC
GGCAACTTCGGCCAGGTCGTGTCGCACACCTACGCGTTCGTCGGCAACTT
CTCGATCATGGCCAGGGTGCAGACCACCGACGGTCGCAACGCGGCGACGA
GCATCGATGCCGGCATCACCCCACCCAAGCCGTTCCTGCTGTCCGTC
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