mRNA_P-wetherbeei_contig8255.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8255.2.1
Unique NamemRNA_P-wetherbeei_contig8255.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8255.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8255contigP-wetherbeei_contig8255:1677..2836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size768
Hectar predicted targeting categoryother localisation
Exons3
Cds size765
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187029.6379046-CDS-P-wetherbeei_contig8255:1678..19721683187029.6379046-CDS-P-wetherbeei_contig8255:1678..1972Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8255 1679..1972 -
1683187029.648902-CDS-P-wetherbeei_contig8255:2157..24931683187029.648902-CDS-P-wetherbeei_contig8255:2157..2493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8255 2158..2493 -
1683187029.6586199-CDS-P-wetherbeei_contig8255:2701..28361683187029.6586199-CDS-P-wetherbeei_contig8255:2701..2836Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8255 2702..2836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8255.2.1prot_P-wetherbeei_contig8255.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8255 1679..2836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8255.2.1

>prot_P-wetherbeei_contig8255.2.1 ID=prot_P-wetherbeei_contig8255.2.1|Name=mRNA_P-wetherbeei_contig8255.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
RLLLQALCRELTARDLGLLVVATNPLTRLSERWLLVAEEAASGGQGRQRP
RALLLRLATAETALGGDSEDDDDDEEETDATDAAESRVCYDGCCGMSGGG
NTSGGGAVTATRAAGTAAASGASVTMASAGGAEDLDMERAAVAASLDAMP
LGMYDPMAHHSGFFELEPLPPRAPALSEYGSAAGARGSWGQPASARQGMS
TRGPVGQHPAMPSPLPQQKQGRQGRGWQPPCHAKFRTAPPPPPPQQQQQS
RYSRQ
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mRNA from alignment at P-wetherbeei_contig8255:1677..2836-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8255.2.1 ID=mRNA_P-wetherbeei_contig8255.2.1|Name=mRNA_P-wetherbeei_contig8255.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1160bp|location=Sequence derived from alignment at P-wetherbeei_contig8255:1677..2836- (Phaeothamnion wetherbeei SAG_119_79)
AGGCTGCTGCTGCAGGCGCTGTGCCGGGAGCTAACGGCGCGCGACTTAGG
CCTGCTGGTGGTGGCGACCAACCCGCTGACGCGCCTCTCAGAGCGCTGGC
TGCTCGTCGCGGAAGAGGCGGCATCCGGCGGCCAGGCGAGTTGACGCGGG
AGCAAAGCCGTTGCCTCCCTTGTCACTGTCTCTCCCGCTGCTGCTGCCGG
CGCCATCATTAAGAGGCGGTTGGCCCCTCTGCCGACGCTGCATTGCGGTG
CACAATTCCGACATTTGTATTAATGGGAATGAATATACCCCAAGATTAAC
AGTACCATTTTTTCATTCACGTCTGGCAAACCCACACTTGCAGGGGCGCC
AGCGGCCGCGCGCTCTGCTGCTTCGGCTTGCCACCGCTGAGACCGCCCTT
GGGGGTGACTCCGAAGACGATGACGATGATGAGGAAGAAACCGACGCCAC
TGATGCCGCCGAAAGCAGGGTATGCTACGACGGCTGCTGCGGCATGAGCG
GCGGCGGAAACACGAGCGGTGGCGGCGCGGTGACGGCGACACGGGCGGCC
GGGACGGCGGCTGCTTCCGGGGCATCTGTGACGATGGCGTCGGCGGGCGG
CGCAGAGGATTTGGACATGGAGAGGGCCGCCGTCGCCGCCAGCCTCGACG
CCATGCCGCTCGGAATGTACGATCCCATGGTGCGTTCATCCTTTTGGAGT
CGTTCGTGTTCTCATCGAAGGTTGTTCCCTGCAGCTTCAAAGCACGCGTT
GTGTTTTGTGGTTCCTTTCGTCTCCCGCCCGTCGAAAGCTGTGTGTGTAA
TTTAGCTGCAATTAACGAAACTGCGTTCTGCTGCTTGCCCCCCGCCCTCA
AACCGCGTCCCCAGGCACATCATTCTGGCTTCTTCGAGCTTGAGCCGCTT
CCACCGCGGGCGCCGGCGCTCTCGGAGTACGGATCGGCCGCCGGCGCGCG
CGGGTCATGGGGACAGCCGGCGTCGGCTCGCCAGGGGATGTCGACACGTG
GGCCGGTGGGACAGCACCCGGCGATGCCGTCGCCGCTGCCTCAGCAGAAG
CAGGGCCGGCAGGGTCGCGGGTGGCAGCCGCCGTGCCACGCAAAGTTCCG
GACGGCGCCTCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGTCGCGGTATT
CACGGCAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8255:1677..2836-

>mRNA_P-wetherbeei_contig8255.2.1 ID=mRNA_P-wetherbeei_contig8255.2.1|Name=mRNA_P-wetherbeei_contig8255.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig8255:1677..2836- (Phaeothamnion wetherbeei SAG_119_79)
AGGCTGCTGCTGCAGGCGCTGTGCCGGGAGCTAACGGCGCGCGACTTAGG
CCTGCTGGTGGTGGCGACCAACCCGCTGACGCGCCTCTCAGAGCGCTGGC
TGCTCGTCGCGGAAGAGGCGGCATCCGGCGGCCAGGGGCGCCAGCGGCCG
CGCGCTCTGCTGCTTCGGCTTGCCACCGCTGAGACCGCCCTTGGGGGTGA
CTCCGAAGACGATGACGATGATGAGGAAGAAACCGACGCCACTGATGCCG
CCGAAAGCAGGGTATGCTACGACGGCTGCTGCGGCATGAGCGGCGGCGGA
AACACGAGCGGTGGCGGCGCGGTGACGGCGACACGGGCGGCCGGGACGGC
GGCTGCTTCCGGGGCATCTGTGACGATGGCGTCGGCGGGCGGCGCAGAGG
ATTTGGACATGGAGAGGGCCGCCGTCGCCGCCAGCCTCGACGCCATGCCG
CTCGGAATGTACGATCCCATGGCACATCATTCTGGCTTCTTCGAGCTTGA
GCCGCTTCCACCGCGGGCGCCGGCGCTCTCGGAGTACGGATCGGCCGCCG
GCGCGCGCGGGTCATGGGGACAGCCGGCGTCGGCTCGCCAGGGGATGTCG
ACACGTGGGCCGGTGGGACAGCACCCGGCGATGCCGTCGCCGCTGCCTCA
GCAGAAGCAGGGCCGGCAGGGTCGCGGGTGGCAGCCGCCGTGCCACGCAA
AGTTCCGGACGGCGCCTCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGTCG
CGGTATTCACGGCAG
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