mRNA_P-wetherbeei_contig8252.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8252.2.1
Unique NamemRNA_P-wetherbeei_contig8252.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8252.2.1 vs. uniprot
Match: D7G235_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G235_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.550e-21
Identity = 68/170 (40.00%), Postives = 97/170 (57.06%), Query Frame = 1 
Query:  166 WRLRNCVHFKVGRTRPRVFPVIIHLLKEDLAWFNEEAESLWEELRQLLRDEVIRPSALTAGDEDKDPEGDRSHKRARKEDPRVNGRNLHFTWRYRPQTPCFTVLEYQKNSATDAPKSPAKGTIGRSNASSGSGGGKLKRGKSRGAAEVEAAGPPEFTALPMSRSSLLVWV 675
            W+ R  ++F  GR+R R  PV+IH+L +D+ WF+ +A SL++EL+ LLR+ VI  +    G+ DKD E  +S KRARKE+  + G  L FT+RYR   P +TVL Y  +    A          R ++S+GS  GK   G +   +       P F  LP+S S+LLVWV
Sbjct:   19 WQGRTLINFVAGRSRLRTLPVVIHILPKDIGWFSADA-SLFDELKLLLRERVISAT----GNGDKDAEAPKSRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYTGDDIERA---------NRGSSSAGSSKGKRCVGSN---SXXXXXXXPAFRHLPLSESTLLVWV 171
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BLAST of mRNA_P-wetherbeei_contig8252.2.1 vs. uniprot
Match: A0A836CBI6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.120e-19
Identity = 57/180 (31.67%), Postives = 97/180 (53.89%), Query Frame = 1 
Query:  163 VWRLRNCVHFKVGRTRPR-VFPVIIHLLKEDLAWFNEEAESLWEELRQLLRDEVIRP-----SALTAGDEDKDPEGDR---SHKRARKEDPRVNGRNLHFTWRYRPQTPCFTVLEYQKNSATDAPKSPAKGTIGRSNASSGSGGGKLKRGKSRGAAEVEAAGPPEFTALPMSRSSLLVWV 675
             W+ RNC++  +G  R + + P+++HLL +DLAW+N  ++ LWEEL++LL+D+VI P     SA+T GDE+++   D    S ++AR+ +  V G  L FT+R+RP  P ++++ +    A    +  A                      S+ AA       P + +LP++ ++LL WV
Sbjct:   18 AWQPRNCINLLIGDARRKQIMPLVVHLLPQDLAWWNASSDKLWEELQRLLKDQVITPYLATPSAVT-GDEEEEKSTDAISTSRRKARRGEKCVQGEGLQFTFRFRPTKPVYSIITFNSVPAATQQQQTA----------------------SKQAA-------PAYASLPLNEATLLAWV 167
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8252.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G235_ECTSI2.550e-2140.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBI6_9STRA5.120e-1931.67Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8252contigP-wetherbeei_contig8252:1572..2857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1083
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003670.1
Cds size879
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187029.5343947-UTR-P-wetherbeei_contig8252:1571..17271683187029.5343947-UTR-P-wetherbeei_contig8252:1571..1727Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8252 1572..1727 +
1683187029.5664577-UTR-P-wetherbeei_contig8252:2809..28571683187029.5664577-UTR-P-wetherbeei_contig8252:2809..2857Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8252 2810..2857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187029.5462348-CDS-P-wetherbeei_contig8252:1727..18411683187029.5462348-CDS-P-wetherbeei_contig8252:1727..1841Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8252 1728..1841 +
1683187029.5564659-CDS-P-wetherbeei_contig8252:2044..28091683187029.5564659-CDS-P-wetherbeei_contig8252:2044..2809Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8252 2045..2809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8252.2.1prot_P-wetherbeei_contig8252.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8252 1728..2809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8252.2.1

>prot_P-wetherbeei_contig8252.2.1 ID=prot_P-wetherbeei_contig8252.2.1|Name=mRNA_P-wetherbeei_contig8252.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=293bp
MPVWRLRNCVHFKVGRTRPRVFPVIIHLLKEDLAWFNEEAESLWEELRQL
LRDEVIRPSALTAGDEDKDPEGDRSHKRARKEDPRVNGRNLHFTWRYRPQ
TPCFTVLEYQKNSATDAPKSPAKGTIGRSNASSGSGGGKLKRGKSRGAAE
VEAAGPPEFTALPMSRSSLLVWVSRGASPPHAMYGSRPLTCYFGDSARVS
AALRQAAEAAKRVEHGGGEGDDLELAIALSLSEARGGADGRSGSSGGGGG
GSSSGGGGSSVTAGGRSGAAAAAAAASKAPGRRSRYLDDDED*
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mRNA from alignment at P-wetherbeei_contig8252:1572..2857+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8252.2.1 ID=mRNA_P-wetherbeei_contig8252.2.1|Name=mRNA_P-wetherbeei_contig8252.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1286bp|location=Sequence derived from alignment at P-wetherbeei_contig8252:1572..2857+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGAGGGAAAGAGAGAAGGAGGGTTACTCCCTCGTAGCACGTGGTGTTC
GCCCATCTGAAGGGGAAGTGAGAGTGCACCCAAGCGTTGGCAAAAGTCAA
AAGGAAGAGGACAAGGTCCCTTCCCTCTGCCCGAGCCCCCCGCTGGCCAA
CCTACCATGCCTGTGTGGCGCCTGAGAAACTGCGTTCACTTCAAAGTAGG
CCGCACGAGGCCTCGCGTCTTCCCCGTCATCATTCATTTGCTCAAGGAAG
ATTTGGCATGGTTCAACGAGGCAAGTTCCGATGGAAAACTGGAATCGCCA
GACAATGTTGCCGGAGCGAGAACTGGCTTCTGTGAAGAGCGATTTCTCAT
TCTCTCATGAAGACCTTGGGATCAACCCACTTCGAATCTGTTTCCTTTCA
TTCCCAAGCTGCGTGGCAACTTTTTTCTGTAGCGAAAACCTCCGTTCTTT
TGCAATGTTATCTGTTACCTCAGGAGGCGGAGTCTCTGTGGGAAGAGCTG
CGGCAGCTTCTACGCGATGAAGTGATTCGCCCGTCGGCCCTCACCGCAGG
GGACGAAGACAAGGACCCCGAGGGCGACAGGTCGCACAAGCGCGCCAGAA
AGGAGGACCCTCGTGTTAACGGCCGCAACCTGCATTTCACGTGGAGATAC
AGGCCGCAGACGCCGTGCTTCACGGTGCTGGAGTACCAAAAAAATTCAGC
AACCGACGCTCCCAAGAGCCCTGCAAAGGGCACCATAGGGCGTTCGAATG
CCAGTAGCGGCAGCGGTGGTGGCAAACTCAAGAGGGGAAAGAGCCGGGGG
GCCGCCGAAGTCGAGGCGGCAGGGCCGCCCGAGTTCACGGCACTGCCAAT
GTCCCGGAGCTCGCTGCTTGTCTGGGTCAGCCGCGGTGCGTCGCCGCCGC
ACGCGATGTACGGTTCACGGCCACTGACGTGTTATTTTGGAGACAGCGCG
AGAGTAAGTGCGGCGCTACGGCAGGCGGCCGAGGCCGCCAAGCGCGTGGA
GCACGGCGGCGGCGAAGGGGACGACTTGGAACTGGCGATCGCCCTGTCGC
TTTCCGAGGCCCGAGGTGGCGCCGATGGACGCAGCGGGAGCAGTGGTGGT
GGTGGTGGTGGAAGCAGCAGCGGTGGCGGCGGCAGTAGTGTTACTGCTGG
TGGAAGAAGTGGTGCGGCTGCCGCTGCTGCTGCTGCAAGCAAAGCACCAG
GAAGGCGAAGTAGATACCTAGATGACGACGAAGACTAAAAAAATCCTTTT
TATGTGATTCCTTAATATATTAGATTAATACCTTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8252:1572..2857+

>mRNA_P-wetherbeei_contig8252.2.1 ID=mRNA_P-wetherbeei_contig8252.2.1|Name=mRNA_P-wetherbeei_contig8252.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=879bp|location=Sequence derived from alignment at P-wetherbeei_contig8252:1572..2857+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGTGTGGCGCCTGAGAAACTGCGTTCACTTCAAAGTAGGCCGCAC
GAGGCCTCGCGTCTTCCCCGTCATCATTCATTTGCTCAAGGAAGATTTGG
CATGGTTCAACGAGGAGGCGGAGTCTCTGTGGGAAGAGCTGCGGCAGCTT
CTACGCGATGAAGTGATTCGCCCGTCGGCCCTCACCGCAGGGGACGAAGA
CAAGGACCCCGAGGGCGACAGGTCGCACAAGCGCGCCAGAAAGGAGGACC
CTCGTGTTAACGGCCGCAACCTGCATTTCACGTGGAGATACAGGCCGCAG
ACGCCGTGCTTCACGGTGCTGGAGTACCAAAAAAATTCAGCAACCGACGC
TCCCAAGAGCCCTGCAAAGGGCACCATAGGGCGTTCGAATGCCAGTAGCG
GCAGCGGTGGTGGCAAACTCAAGAGGGGAAAGAGCCGGGGGGCCGCCGAA
GTCGAGGCGGCAGGGCCGCCCGAGTTCACGGCACTGCCAATGTCCCGGAG
CTCGCTGCTTGTCTGGGTCAGCCGCGGTGCGTCGCCGCCGCACGCGATGT
ACGGTTCACGGCCACTGACGTGTTATTTTGGAGACAGCGCGAGAGTAAGT
GCGGCGCTACGGCAGGCGGCCGAGGCCGCCAAGCGCGTGGAGCACGGCGG
CGGCGAAGGGGACGACTTGGAACTGGCGATCGCCCTGTCGCTTTCCGAGG
CCCGAGGTGGCGCCGATGGACGCAGCGGGAGCAGTGGTGGTGGTGGTGGT
GGAAGCAGCAGCGGTGGCGGCGGCAGTAGTGTTACTGCTGGTGGAAGAAG
TGGTGCGGCTGCCGCTGCTGCTGCTGCAAGCAAAGCACCAGGAAGGCGAA
GTAGATACCTAGATGACGACGAAGACTAA
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