mRNA_P-wetherbeei_contig8230.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8230.1.1
Unique NamemRNA_P-wetherbeei_contig8230.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8230.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8230contigP-wetherbeei_contig8230:172..2816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1918
Hectar predicted targeting categorymitochondrion
Exons3
Cds size1917
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.0959632-CDS-P-wetherbeei_contig8230:171..11551683187028.0959632-CDS-P-wetherbeei_contig8230:171..1155Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8230 172..1155 -
1683187028.107351-CDS-P-wetherbeei_contig8230:1287..14671683187028.107351-CDS-P-wetherbeei_contig8230:1287..1467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8230 1288..1467 -
1683187028.11765-CDS-P-wetherbeei_contig8230:2063..28161683187028.11765-CDS-P-wetherbeei_contig8230:2063..2816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8230 2064..2816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8230.1.1prot_P-wetherbeei_contig8230.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8230 172..2816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8230.1.1

>prot_P-wetherbeei_contig8230.1.1 ID=prot_P-wetherbeei_contig8230.1.1|Name=mRNA_P-wetherbeei_contig8230.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=639bp
ALRPSLTAGAAKRWLASLDPAAAAASAAGGLRGPGTARIANFQHLPSLRS
DAGHGAGYYGYAYGFARPHDSGTPAPGAPAGGGGGALHAPGFRPPSVLPL
AAQMAPGSPPDAAPTAATLEAVPSVSATAAAAVGNPAGLGTMAGVAMTAS
AISTLAAAAAAPVPQPPPRMGSPTPGSHYNLQQQQHPVPPLHPSAGGGGA
GPSVGRRLKERGGALLGGRLRRHKENAARTVGSADPFEVAAEHLQGELVE
LGHVIAYMVLELDPFRRHLRERPIALRLALLFLVKAAMLQQFHGGGSQGG
GGRHQGSSASKVSPAIVDAIAALRALRHAQRAMEPARRAAVAAMTAAVAG
RMRQELRLRRAALRLSCLPPIAAAALLEGGRGLHCLPARWRRRLRELLSE
AGHGSGGGGGGIGVVGPIIIGKKGGGGDGGGRVLALRRGGHAAAADDAAE
TDEATEPRTKDSVRASVVSRLWVRTLQSASVYWRHTFRHRSGSDDEYEED
TSGGGSGGGAVGRIFGGAAFADGEAGGRNSGDSGGGRVRRSIRSSRSGSG
DGGGNMYDERIAAERRASAAAADKAAAEVRGLLLLGMTPPDSPRKSPDQQ
WFRESGRDSGGGRGSGVGSMLQSGPNSPPSPLMSPARSV
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mRNA from alignment at P-wetherbeei_contig8230:172..2816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8230.1.1 ID=mRNA_P-wetherbeei_contig8230.1.1|Name=mRNA_P-wetherbeei_contig8230.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2645bp|location=Sequence derived from alignment at P-wetherbeei_contig8230:172..2816- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTGCGCCCGAGCCTGACGGCGGGTGCCGCCAAGCGCTGGCTGGCCAG
CCTCGATCCGGCGGCGGCAGCGGCCTCGGCGGCGGGCGGACTGCGCGGGC
CAGGCACCGCACGGATCGCCAACTTCCAGCACCTGCCATCGCTGCGGTCT
GACGCGGGGCATGGCGCCGGCTACTACGGGTACGCTTACGGCTTCGCGCG
ACCCCATGACTCGGGTACGCCCGCCCCCGGTGCGCCGGCGGGCGGCGGCG
GCGGGGCGCTGCATGCTCCCGGCTTCCGGCCGCCCAGCGTGCTCCCCCTC
GCGGCGCAAATGGCGCCGGGCAGCCCGCCTGACGCGGCTCCGACGGCGGC
GACGCTAGAGGCGGTACCGTCGGTCTCGGCGACGGCGGCGGCTGCGGTGG
GGAACCCGGCTGGTCTCGGGACGATGGCTGGAGTAGCGATGACAGCGTCG
GCAATTTCCACTCTGGCCGCCGCAGCGGCAGCCCCAGTACCGCAGCCGCC
GCCGCGAATGGGCAGCCCGACGCCCGGCTCCCACTACAACCTGCAGCAGC
AGCAGCACCCAGTGCCGCCGCTACACCCGTCGGCGGGCGGCGGCGGTGCT
GGTCCGAGCGTGGGGCGGCGGTTGAAGGAGCGGGGCGGGGCGCTGCTGGG
CGGGCGGCTGCGGCGGCACAAGGAGAACGCGGCGCGCACTGTCGGCAGCG
CGGACCCATTCGAGGTGGCGGCGGAACACCTGCAGGGAGAGCTCGTCGAA
CTGGTGGGGAAATTTTCCTTTTTTCCCTCCTGCTTTTCTGTTTCCCTATA
TTTGTTCATCCTTACTGTTTCGGTTCGCTTACGGTTCTGCGATGGTTGTT
TTAGTAACTTTCGCAGCTGGCAGCATAAAGTAGTTGATCTGAGCGGGGTT
CTGTCGGGGGGGATGCGCCGTGCTGAAGGAGATGAAAATCAGATCGAAGG
ATGCCTGTATATTGAGCGGAAGGAGCTGCTCGGTTCGCCGGTGCAAGCGG
CACGAGGCATACGATTCGCGTAGCTGAAGGGCGCATCACTGCCATGGGCG
GGTGACGTTCGCTCTGCTAGGGAAAGAGGAAGAAACGCGGCCCGCCTTTG
CATTATATTGCGCCTTCGTGACGAATGGCTGCTCGTCTCATCGCCTGGGC
AGGCAGATTGGGCGGATGCGGCTCCTCGATCTTTGGAAGAGTGCCCCCTC
TTGTGCCTTTGCCTGCCTTTCGGGCCCTTTCCCCTTCCTCCCTTTTCTGC
TTCTTCTTTCTTTCGTTCCCGTTGACTTCACTTCCGGTTCCCCGTCCCTC
CCCGATTTTACACCCCTTTCCTTGTTCTCCCCGTCTGTGTGAGAAAAAGG
GCCACGTTATTGCGTACATGGTGCTGGAGCTGGATCCCTTCCGCCGCCAC
CTGCGCGAGCGGCCCATCGCGCTCCGGCTGGCGCTGCTCTTCCTCGTCAA
GGCCGCCATGCTGCAGCAGTTTCACGGCGGCGGCAGCCAAGGCGGCGGTG
GCAGGCACCAAGGGTCTTCGGCCAGCAAGGTGCGTGCTTGGGTTGGGTTC
GCGAAAGTCGGCTCAGTAGTGAGGTGGACGGCGCTTGGAGCGGCTTCGCA
TCGGTCGTCGCCGTCCCAATCGCCATTTAAAGCACTGTTCCCAATGATTT
CAACCACGCAGGTCAGCCCGGCGATCGTTGATGCGATCGCCGCGTTGCGC
GCCCTCCGCCACGCCCAGCGGGCAATGGAGCCGGCGCGCCGCGCCGCCGT
AGCCGCCATGACGGCCGCCGTCGCCGGCCGGATGCGGCAGGAGTTGCGGC
TGCGGCGGGCAGCGCTCCGGCTGTCCTGCCTGCCGCCCATCGCTGCAGCG
GCGCTCCTGGAGGGCGGCCGCGGGCTGCACTGCCTGCCGGCGCGCTGGCG
GCGGCGACTGCGCGAGCTTTTGTCCGAAGCCGGCCACGGCAGCGGTGGGG
GCGGGGGTGGCATTGGCGTCGTGGGGCCAATTATCATCGGGAAGAAGGGT
GGCGGCGGCGACGGTGGCGGAAGAGTGCTCGCTCTGCGGCGAGGCGGACA
TGCCGCAGCGGCTGACGACGCAGCGGAGACAGATGAAGCGACCGAGCCCC
GGACCAAAGACTCGGTGCGAGCCAGCGTCGTTTCCCGCCTATGGGTCCGG
ACGTTGCAATCAGCATCAGTCTACTGGCGCCATACTTTCCGCCACCGCAG
CGGCAGCGACGACGAATACGAGGAAGATACCAGCGGCGGTGGGAGCGGCG
GCGGCGCCGTTGGGCGCATCTTTGGTGGAGCAGCCTTCGCCGACGGCGAG
GCTGGTGGGCGCAACAGCGGCGACAGCGGTGGCGGCCGCGTCCGCCGAAG
TATCCGCAGCAGCCGAAGCGGCAGCGGCGACGGTGGCGGCAATATGTATG
ACGAGCGCATTGCCGCCGAGAGGCGGGCATCTGCGGCAGCGGCAGACAAG
GCGGCGGCTGAAGTGCGGGGCCTCCTCCTGCTCGGGATGACGCCGCCGGA
CTCGCCCCGGAAGTCGCCCGACCAGCAGTGGTTCCGAGAGTCCGGTCGAG
ACAGCGGCGGCGGCAGAGGCAGCGGCGTCGGGAGCATGCTGCAGAGCGGC
CCCAACTCGCCGCCATCGCCGCTGATGTCACCGGCGCGGTCAGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8230:172..2816-

>mRNA_P-wetherbeei_contig8230.1.1 ID=mRNA_P-wetherbeei_contig8230.1.1|Name=mRNA_P-wetherbeei_contig8230.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1917bp|location=Sequence derived from alignment at P-wetherbeei_contig8230:172..2816- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTGCGCCCGAGCCTGACGGCGGGTGCCGCCAAGCGCTGGCTGGCCAG
CCTCGATCCGGCGGCGGCAGCGGCCTCGGCGGCGGGCGGACTGCGCGGGC
CAGGCACCGCACGGATCGCCAACTTCCAGCACCTGCCATCGCTGCGGTCT
GACGCGGGGCATGGCGCCGGCTACTACGGGTACGCTTACGGCTTCGCGCG
ACCCCATGACTCGGGTACGCCCGCCCCCGGTGCGCCGGCGGGCGGCGGCG
GCGGGGCGCTGCATGCTCCCGGCTTCCGGCCGCCCAGCGTGCTCCCCCTC
GCGGCGCAAATGGCGCCGGGCAGCCCGCCTGACGCGGCTCCGACGGCGGC
GACGCTAGAGGCGGTACCGTCGGTCTCGGCGACGGCGGCGGCTGCGGTGG
GGAACCCGGCTGGTCTCGGGACGATGGCTGGAGTAGCGATGACAGCGTCG
GCAATTTCCACTCTGGCCGCCGCAGCGGCAGCCCCAGTACCGCAGCCGCC
GCCGCGAATGGGCAGCCCGACGCCCGGCTCCCACTACAACCTGCAGCAGC
AGCAGCACCCAGTGCCGCCGCTACACCCGTCGGCGGGCGGCGGCGGTGCT
GGTCCGAGCGTGGGGCGGCGGTTGAAGGAGCGGGGCGGGGCGCTGCTGGG
CGGGCGGCTGCGGCGGCACAAGGAGAACGCGGCGCGCACTGTCGGCAGCG
CGGACCCATTCGAGGTGGCGGCGGAACACCTGCAGGGAGAGCTCGTCGAA
CTGGGCCACGTTATTGCGTACATGGTGCTGGAGCTGGATCCCTTCCGCCG
CCACCTGCGCGAGCGGCCCATCGCGCTCCGGCTGGCGCTGCTCTTCCTCG
TCAAGGCCGCCATGCTGCAGCAGTTTCACGGCGGCGGCAGCCAAGGCGGC
GGTGGCAGGCACCAAGGGTCTTCGGCCAGCAAGGTCAGCCCGGCGATCGT
TGATGCGATCGCCGCGTTGCGCGCCCTCCGCCACGCCCAGCGGGCAATGG
AGCCGGCGCGCCGCGCCGCCGTAGCCGCCATGACGGCCGCCGTCGCCGGC
CGGATGCGGCAGGAGTTGCGGCTGCGGCGGGCAGCGCTCCGGCTGTCCTG
CCTGCCGCCCATCGCTGCAGCGGCGCTCCTGGAGGGCGGCCGCGGGCTGC
ACTGCCTGCCGGCGCGCTGGCGGCGGCGACTGCGCGAGCTTTTGTCCGAA
GCCGGCCACGGCAGCGGTGGGGGCGGGGGTGGCATTGGCGTCGTGGGGCC
AATTATCATCGGGAAGAAGGGTGGCGGCGGCGACGGTGGCGGAAGAGTGC
TCGCTCTGCGGCGAGGCGGACATGCCGCAGCGGCTGACGACGCAGCGGAG
ACAGATGAAGCGACCGAGCCCCGGACCAAAGACTCGGTGCGAGCCAGCGT
CGTTTCCCGCCTATGGGTCCGGACGTTGCAATCAGCATCAGTCTACTGGC
GCCATACTTTCCGCCACCGCAGCGGCAGCGACGACGAATACGAGGAAGAT
ACCAGCGGCGGTGGGAGCGGCGGCGGCGCCGTTGGGCGCATCTTTGGTGG
AGCAGCCTTCGCCGACGGCGAGGCTGGTGGGCGCAACAGCGGCGACAGCG
GTGGCGGCCGCGTCCGCCGAAGTATCCGCAGCAGCCGAAGCGGCAGCGGC
GACGGTGGCGGCAATATGTATGACGAGCGCATTGCCGCCGAGAGGCGGGC
ATCTGCGGCAGCGGCAGACAAGGCGGCGGCTGAAGTGCGGGGCCTCCTCC
TGCTCGGGATGACGCCGCCGGACTCGCCCCGGAAGTCGCCCGACCAGCAG
TGGTTCCGAGAGTCCGGTCGAGACAGCGGCGGCGGCAGAGGCAGCGGCGT
CGGGAGCATGCTGCAGAGCGGCCCCAACTCGCCGCCATCGCCGCTGATGT
CACCGGCGCGGTCAGTT
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