mRNA_P-wetherbeei_contig823.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig823.5.1
Unique NamemRNA_P-wetherbeei_contig823.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig823.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig823contigP-wetherbeei_contig823:7292..8529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size609
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006260.1
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.0054731-UTR-P-wetherbeei_contig823:7291..73471683187028.0054731-UTR-P-wetherbeei_contig823:7291..7347Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig823 7292..7347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187028.0164626-CDS-P-wetherbeei_contig823:7347..74911683187028.0164626-CDS-P-wetherbeei_contig823:7347..7491Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 7348..7491 +
1683187028.0264602-CDS-P-wetherbeei_contig823:7616..77701683187028.0264602-CDS-P-wetherbeei_contig823:7616..7770Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 7617..7770 +
1683187028.0365772-CDS-P-wetherbeei_contig823:7930..80671683187028.0365772-CDS-P-wetherbeei_contig823:7930..8067Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 7931..8067 +
1683187028.0467348-CDS-P-wetherbeei_contig823:8412..85291683187028.0467348-CDS-P-wetherbeei_contig823:8412..8529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig823 8413..8529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig823.5.1prot_P-wetherbeei_contig823.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig823 7348..8529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig823.5.1

>prot_P-wetherbeei_contig823.5.1 ID=prot_P-wetherbeei_contig823.5.1|Name=mRNA_P-wetherbeei_contig823.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MLDRITILVLHGDSTAEFVDVEAAEGDVVTEEWLREALVGAGIVDVLKVK
VHDGRFFDGKDLAKLFCSRLQEEQRYSAALRDELETERSATNGALDKLAG
EERELRQRLEEAETRAATADVRLGDIMAALRMQKELRAKEALALQAFERE
RDALSRDLADTVACYNAQTDALSAADAEAAALRA
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mRNA from alignment at P-wetherbeei_contig823:7292..8529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig823.5.1 ID=mRNA_P-wetherbeei_contig823.5.1|Name=mRNA_P-wetherbeei_contig823.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1238bp|location=Sequence derived from alignment at P-wetherbeei_contig823:7292..8529+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTGGAGATCTACAGGAGATTCTTTGGGTGTCTCTTCTAGACACACTTC
CTTCTGATGCTGGACCGCATCACAATTTTGGTCCTGCATGGCGATTCGAC
AGCCGAGTTTGTGGATGTCGAAGCCGCAGAGGGCGACGTTGTCACCGAGG
AATGGCTGCGCGAAGCCCTTGTCGGCGCTGGAATCGTCGACGTTCTAAAG
GTAAATTGCAGATGTTGTTTGGCCAAGATGCAATGAAAGCTGTTGAAAAC
TGATTCCTTTCTCATCGCTGACGGAACAACTACGTTAAACACCACCTCCC
CATTTCATCTCCGGCGCGCCGCCAGGTTAAAGTTCACGACGGACGATTTT
TTGACGGGAAAGACTTGGCAAAATTGTTTTGTTCCAGGCTGCAAGAGGAG
CAGCGGTATTCGGCGGCTCTCAGGGACGAGTTGGAAACCGAGCGGTCGGC
CACAAACGGGGCCTTAGATAAACTAGCAGGTGCGTTTCGCCCTGTCATCC
ATTCTCATACATTGTTTTAAGAGCGTTTGCATTGGAACGATGGAGAGGAC
CTCCTCTATCTCATGATGAGTCATTTATGTCTGTCGATGCGTTGATTACT
AGCTCATCACATTATTTTGCCTTCCACGGCGGTGTGTAGGTGAGGAAAGG
GAGCTGCGGCAGCGGCTTGAGGAGGCGGAGACCCGGGCGGCGACCGCCGA
CGTCCGACTCGGAGACATCATGGCCGCCCTCCGGATGCAGAAAGAGCTCC
GTGCGAAAGAGGCGCTTGCGCTGCAGGTGAGTCGGCATTCTCTTCGTTTG
GCGGTTGCCGCGTCTTAGCTTCTCCTCTTTTGTTACAAAGATTACGGCTG
GGGTTACCGAGAACAGCGTCAACTTTTCCCTGCTGTGGTGCATCATTCTT
GCGTGGGAGTCGGTTTTTAAATCTCCAGTGCCTTTCGTACAGCTCTCCAG
AAAAACTCTATTTCTGCTATGAGTGACGTAAACGGTGACCAGACCATCGC
TTCAAACAACTGCCAATTCAGCTCCCCGTTTCTTCTCTTGGCCCTTGCTG
GGGTCAAGTCAACACAAAAGAACTAACTTTTCAATTTCTCAATCAATCGC
TCTTGCCGTTGGCGCGCGCAGGCTTTTGAGCGCGAGCGGGACGCCCTGTC
CCGGGACCTCGCCGACACCGTCGCCTGCTACAACGCCCAGACCGATGCGT
TATCCGCTGCCGACGCCGAGGCCGCCGCGCTGCGCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig823:7292..8529+

>mRNA_P-wetherbeei_contig823.5.1 ID=mRNA_P-wetherbeei_contig823.5.1|Name=mRNA_P-wetherbeei_contig823.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig823:7292..8529+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGACCGCATCACAATTTTGGTCCTGCATGGCGATTCGACAGCCGA
GTTTGTGGATGTCGAAGCCGCAGAGGGCGACGTTGTCACCGAGGAATGGC
TGCGCGAAGCCCTTGTCGGCGCTGGAATCGTCGACGTTCTAAAGGTTAAA
GTTCACGACGGACGATTTTTTGACGGGAAAGACTTGGCAAAATTGTTTTG
TTCCAGGCTGCAAGAGGAGCAGCGGTATTCGGCGGCTCTCAGGGACGAGT
TGGAAACCGAGCGGTCGGCCACAAACGGGGCCTTAGATAAACTAGCAGGT
GAGGAAAGGGAGCTGCGGCAGCGGCTTGAGGAGGCGGAGACCCGGGCGGC
GACCGCCGACGTCCGACTCGGAGACATCATGGCCGCCCTCCGGATGCAGA
AAGAGCTCCGTGCGAAAGAGGCGCTTGCGCTGCAGGCTTTTGAGCGCGAG
CGGGACGCCCTGTCCCGGGACCTCGCCGACACCGTCGCCTGCTACAACGC
CCAGACCGATGCGTTATCCGCTGCCGACGCCGAGGCCGCCGCGCTGCGCG
CC
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