mRNA_P-wetherbeei_contig8195.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8195.1.1
Unique NamemRNA_P-wetherbeei_contig8195.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8195.1.1 vs. uniprot
Match: A0A7S1BV76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BV76_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.010e-11
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   73 IKAARGGCSRLEQYGSDDDEPVWEDVTEEEYQRTVRERQEKGDFVVDDNGLGYADNGEEFIG-----RMDEDEASELT-DESAFKAR 315
            + A R G SRL++Y   ++EPV++++ E+EY+  V  R+E+ DFVVDD+GLGY D+GEE +G     R  EDEA +   DE   K R
Sbjct:   40 VGATRTGRSRLDEYEVKEEEPVYDEMDEDEYRGLVESRREREDFVVDDDGLGYHDDGEEDVGPRAPDRRAEDEAEDSDPDEKERKRR 126          
BLAST of mRNA_P-wetherbeei_contig8195.1.1 vs. uniprot
Match: A0A2D7DKJ4_9SPIO (PI-PLC Y-box domain-containing protein n=1 Tax=Spirochaeta sp. TaxID=28185 RepID=A0A2D7DKJ4_9SPIO)

HSP 1 Score: 68.2 bits (165), Expect = 3.830e-11
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   19 RPRRQTGRNAKQQAALEKIKAAR-GGCSRLEQYGSDDDEPVWEDVTEEEYQRTVRERQEKGDFVVDDNGLGYADNGEEFIGRMDEDEASELTDESAFKARG 318
            R RR   +   ++A    ++AAR GG +R +Q+ + +++ V+E VTE+EY   VR+R++  DFVVDD+GLGY D+GEE  G   EDEA  L +++A K RG
Sbjct:   66 RARRTGTKKQSREAVRAALRAAREGGAARSDQWEAKEEKDVYEQVTEQEYADLVRKRRQNEDFVVDDDGLGYFDDGEEHFG---EDEAEGL-EQAAPKQRG 162          
BLAST of mRNA_P-wetherbeei_contig8195.1.1 vs. uniprot
Match: A0A8J2SRJ2_9STRA (DNA polymerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRJ2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.740e-11
Identity = 42/101 (41.58%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   19 RPRRQTGRNAKQQAALEKIKAAR-GGCSRLEQYGSDDDEPVWEDVTEEEYQRTVRERQEKGDFVVDDNGLGYADNGEEFIGRMDEDEASELTDESAFKARG 318
            R RR   +   ++A    ++AAR GG +R +Q+ + +++ V+E VTE+EY   VR+R++  DFVVDD+GLGY D+GEE  G    ++ +E  +E+A K RG
Sbjct:    3 RARRTGTKKQSREAVRAALRAAREGGAARSDQWEAKEEKDVYEQVTEQEYADLVRKRRQNEDFVVDDDGLGYFDDGEEHFG----EDVAEGLEEAAPKQRG 99          
BLAST of mRNA_P-wetherbeei_contig8195.1.1 vs. uniprot
Match: A0A139B040_GONPJ (DNA polymerase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139B040_GONPJ)

HSP 1 Score: 66.6 bits (161), Expect = 1.440e-10
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   58 AALEKIKAARG-GCSRLEQYGSDDDEPVWEDVTEEEYQRTVRERQEKGDFVVDDNGLGYADNGEE 249
            +A+ K+K A+  G SRLE+   DDDE ++E V+EE+Y + VR R ++ DFVVDD+G GY DNGEE
Sbjct:   14 SAIRKLKEAKKKGISRLEELKFDDDESIFEQVSEEDYDQIVRNRLKEDDFVVDDDGRGYVDNGEE 78          
BLAST of mRNA_P-wetherbeei_contig8195.1.1 vs. uniprot
Match: A0A1V8TW09_9PEZI (Uncharacterized protein n=1 Tax=Rachicladosporium sp. CCFEE 5018 TaxID=1974281 RepID=A0A1V8TW09_9PEZI)

HSP 1 Score: 65.5 bits (158), Expect = 3.560e-10
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   46 AKQQAALEKIKAAR-GGCSRLEQYGSDDDEPVWEDVTEEEYQRTVRERQEKGDFVVDDNGLGYADNGEE 249
            A++QAAL K+KAAR GG +  + Y  ++ + V+E V +E Y++ VRER ++ DFVVDDNG GYAD+G E
Sbjct:    6 AERQAALAKLKAARAGGTTAFDAYQVEEAKDVYETVDDEGYKKVVRERLDQDDFVVDDNGAGYADDGRE 74          
BLAST of mRNA_P-wetherbeei_contig8195.1.1 vs. uniprot
Match: A0A1Y2FCE8_PROLT (DNA polymerase n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FCE8_PROLT)

HSP 1 Score: 65.1 bits (157), Expect = 5.000e-10
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   46 AKQQAALEKIKAAR-GGCSRLEQYGSDDDEPVWEDVTEEEYQRTVRERQEKGDFVVDDNGLGYADNGEEFIGRMDE 270
            AKQQ AL +++A +  G  R++ Y    +E ++E+V EE Y++ VR+R +K DFVVDD+G+GYADNG++   R +E
Sbjct:    8 AKQQNALAELRALKQAGKRRIDSYKDQVEEDIYEEVDEEGYRKVVRDRLDKDDFVVDDDGIGYADNGQDEWERAEE 83          
BLAST of mRNA_P-wetherbeei_contig8195.1.1 vs. uniprot
Match: A0A1Z5JUX1_FISSO (DNA polymerase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUX1_FISSO)

HSP 1 Score: 65.1 bits (157), Expect = 5.000e-10
Identity = 37/71 (52.11%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   49 KQQAALEKIKAARG-GCSRLEQYGSDDDEPVWEDVTEEEYQRTVRERQEKGDFVVDDNGLGYADNGEEFIG 258
            +++AAL K ++AR  G S L+Q   +DD  ++++VTEEEY++TV+ R+E+ DFVVDD+GLGY D+GEE  G
Sbjct:    6 RRRAALAKYRSARETGTSALDQIEFEDD-AIYDEVTEEEYRQTVQARREREDFVVDDDGLGYYDDGEERFG 75          
BLAST of mRNA_P-wetherbeei_contig8195.1.1 vs. uniprot
Match: A0A8H3GKC4_9AGAM (DNA polymerase n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3GKC4_9AGAM)

HSP 1 Score: 64.7 bits (156), Expect = 6.830e-10
Identity = 29/62 (46.77%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   58 AALEKIKAARGGCSRLEQYGSDDDEPVWEDVTEEEYQRTVRERQEKGDFVVDDNGLGYADNG 243
            +A+ ++KAAR G  R +Q+ S +DE ++E+V+E++Y+R V+ R ++ DF+VDD+G GY DNG
Sbjct:   11 SAIAELKAARAGADRSKQWKSTEDEDLYEEVSEDDYKRIVKSRLDRDDFIVDDDGGGYIDNG 72          
BLAST of mRNA_P-wetherbeei_contig8195.1.1 vs. uniprot
Match: A0A1V8TGV4_9PEZI (DNA polymerase n=2 Tax=Rachicladosporium antarcticum TaxID=1507870 RepID=A0A1V8TGV4_9PEZI)

HSP 1 Score: 64.7 bits (156), Expect = 6.830e-10
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   46 AKQQAALEKIKAAR-GGCSRLEQYGSDDDEPVWEDVTEEEYQRTVRERQEKGDFVVDDNGLGYADNGEE 249
            A++QAAL ++KAAR GG +  + Y  ++ + V+E V +E Y++ VRER ++ DFVVDDNG GYAD+G E
Sbjct:    6 AERQAALARLKAARAGGTTAFDAYQVEEAQDVYETVDDEGYKKVVRERLDQDDFVVDDNGAGYADDGRE 74          
BLAST of mRNA_P-wetherbeei_contig8195.1.1 vs. uniprot
Match: A0A1W5CX71_9LECA (DNA polymerase n=2 Tax=Lasallia pustulata TaxID=136370 RepID=A0A1W5CX71_9LECA)

HSP 1 Score: 61.6 bits (148), Expect = 8.210e-9
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   58 AALEKIKAARG-GCSRLEQYGSDDDEPVWEDVTEEEYQRTVRERQEKGDFVVDDNGLGYADNG-EEFIGRMDEDEASELTDESAFKAR 315
            A   ++KA R  G +RL  Y  D++E ++E+V EE Y+  VR R ++ DFVVDDNG GYAD+G EE+ G    D AS   +E   K +
Sbjct:    5 ARFAELKALRASGKTRLSTYQVDEEEELYEEVDEEGYKEVVRGRLDRDDFVVDDNGEGYADDGREEWAGERRYDSASGSEEELPLKGK 92          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8195.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1BV76_9STRA1.010e-1145.98Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A2D7DKJ4_9SPIO3.830e-1144.55PI-PLC Y-box domain-containing protein n=1 Tax=Spi... [more]
A0A8J2SRJ2_9STRA7.740e-1141.58DNA polymerase n=1 Tax=Pelagomonas calceolata TaxI... [more]
A0A139B040_GONPJ1.440e-1053.85DNA polymerase n=1 Tax=Gonapodya prolifera (strain... [more]
A0A1V8TW09_9PEZI3.560e-1052.17Uncharacterized protein n=1 Tax=Rachicladosporium ... [more]
A0A1Y2FCE8_PROLT5.000e-1046.05DNA polymerase n=1 Tax=Protomyces lactucae-debilis... [more]
A0A1Z5JUX1_FISSO5.000e-1052.11DNA polymerase n=2 Tax=Fistulifera solaris TaxID=1... [more]
A0A8H3GKC4_9AGAM6.830e-1046.77DNA polymerase n=1 Tax=Rhizoctonia solani TaxID=45... [more]
A0A1V8TGV4_9PEZI6.830e-1050.72DNA polymerase n=2 Tax=Rachicladosporium antarctic... [more]
A0A1W5CX71_9LECA8.210e-944.32DNA polymerase n=2 Tax=Lasallia pustulata TaxID=13... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8195contigP-wetherbeei_contig8195:1929..2403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog470704.XP_007757872.1
Preferred namePOL1
PFAMsDNA_pol_B,DNA_pol_B_exo1,DNA_pol_alpha_N,zf-DNA_Pol
Model size318
Max annot lvl4751|Fungi
KEGG rclassRC02795
KEGG koko:K02320
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000428,GO:0000726,GO:0000731,GO:0000734,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005658,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0022616,GO:0030154,GO:0030880,GO:0030894,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035861,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045165,GO:0046483,GO:0048869,GO:0050896,GO:0051321,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090734,GO:0097159,GO:0098687,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902292,GO:1902295,GO:1902315,GO:1902318,GO:1902494,GO:1902969,GO:1902975,GO:1902981,GO:1903046,GO:1903047,GO:1990234,GO:1990837
Exons2
Evalue2.51e-09
EggNOG OGsCOG0417@1|root,KOG0970@2759|Eukaryota,38CZ4@33154|Opisthokonta,3NY8S@4751|Fungi,3QQUS@4890|Ascomycota,20G2S@147545|Eurotiomycetes,3MRR5@451870|Chaetothyriomycetidae
EC2.7.7.7
DescriptionDNA polymerase alpha subunit A
Cds size318
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187025.4065464-CDS-P-wetherbeei_contig8195:1928..20451683187025.4065464-CDS-P-wetherbeei_contig8195:1928..2045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8195 1929..2045 +
1683187025.4202874-CDS-P-wetherbeei_contig8195:2202..24031683187025.4202874-CDS-P-wetherbeei_contig8195:2202..2403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8195 2203..2403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8195.1.1prot_P-wetherbeei_contig8195.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8195 1929..2403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8195.1.1

>prot_P-wetherbeei_contig8195.1.1 ID=prot_P-wetherbeei_contig8195.1.1|Name=mRNA_P-wetherbeei_contig8195.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MSEGASRPRRQTGRNAKQQAALEKIKAARGGCSRLEQYGSDDDEPVWEDV
TEEEYQRTVRERQEKGDFVVDDNGLGYADNGEEFIGRMDEDEASELTDES
AFKARG
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mRNA from alignment at P-wetherbeei_contig8195:1929..2403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8195.1.1 ID=mRNA_P-wetherbeei_contig8195.1.1|Name=mRNA_P-wetherbeei_contig8195.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=475bp|location=Sequence derived from alignment at P-wetherbeei_contig8195:1929..2403+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGAAGGAGCGAGCCGTCCGAGACGGCAGACAGGCAGAAATGCGAA GCAGCAGGCGGCTTTAGAGAAGATCAAGGCCGCACGGGGAGGTTGCAGCC GATTGGAGCAATACGGGGTACGTCTCAGACCTCCTTTGAGCTCAATCTCT CCGTTACTCCTCCATGCACTATGCGCTTTGAACCCGGATCGTTAAAGATC TGGGCTTCCCCGCTCTCTTCGTCTTCTATCCTTCCCCAGTAAATTTGAAT TCCCTCCCGCTCCGCCTACCGCAGTCTGACGATGATGAGCCCGTCTGGGA GGACGTAACCGAAGAAGAGTACCAACGCACCGTCAGAGAGCGGCAGGAGA AAGGGGACTTCGTTGTGGACGACAATGGTCTCGGCTACGCGGACAACGGC GAAGAGTTCATCGGCCGCATGGACGAGGATGAGGCGAGTGAACTAACTGA TGAAAGTGCTTTTAAAGCACGTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8195:1929..2403+

>mRNA_P-wetherbeei_contig8195.1.1 ID=mRNA_P-wetherbeei_contig8195.1.1|Name=mRNA_P-wetherbeei_contig8195.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig8195:1929..2403+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGAAGGAGCGAGCCGTCCGAGACGGCAGACAGGCAGAAATGCGAA
GCAGCAGGCGGCTTTAGAGAAGATCAAGGCCGCACGGGGAGGTTGCAGCC
GATTGGAGCAATACGGGTCTGACGATGATGAGCCCGTCTGGGAGGACGTA
ACCGAAGAAGAGTACCAACGCACCGTCAGAGAGCGGCAGGAGAAAGGGGA
CTTCGTTGTGGACGACAATGGTCTCGGCTACGCGGACAACGGCGAAGAGT
TCATCGGCCGCATGGACGAGGATGAGGCGAGTGAACTAACTGATGAAAGT
GCTTTTAAAGCACGTGGG
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