mRNA_P-wetherbeei_contig8194.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8194.3.1
Unique NamemRNA_P-wetherbeei_contig8194.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8194.3.1 vs. uniprot
Match: A0A7Z9PQ84_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PQ84_9BACT)

HSP 1 Score: 155 bits (393), Expect = 3.110e-42
Identity = 91/205 (44.39%), Postives = 119/205 (58.05%), Query Frame = 1 
Query:    1 LFNMAKQLGIEANLTP--YGGGEDPWELLAELKRFRAE--SEGVVNEKDMSHFLELLGKLETNVEAQRLINQAHPEQLFGFFYLQFPLFGANNVEVWIRYRSEENGGKTVESDDCALEFLVTTENLGELFFVVDIQGDLIDLSVGVESEDVREFVSRYLPLLQERIEQQDWVAGNFTCSVRG-SEKRELVEHTDFSRLESCNVQA 600
            L  MAKQ GIE NL P  YGGGE+ W+  A L+R R     EG+  E+     L L+  LE N+EAQ+LIN A PE   G++YLQ P+   +  EVW+ Y  +  G + +   D  +EF+V T+ +GEL F+V+I+     + +G  SE+VR F   YLP L ERI    W  GNF    R    KRELVEHTDF  +E  +VQA
Sbjct:  213 LKGMAKQTGIELNLGPLGYGGGEE-WDFAAILQRMRERCAKEGIGGEE----LLSLMRSLEENLEAQKLINSAKPESNLGYYYLQLPVH-PDPAEVWLEYTEDGEGNRVINPQDMRVEFVVNTDGMGELHFMVEIRRGKASVFLGTASEEVRRFAVGYLPALAERITALGWEQGNFRTVFRPHGGKRELVEHTDFDTMERYDVQA 411
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BLAST of mRNA_P-wetherbeei_contig8194.3.1 vs. uniprot
Match: A0A7X8XP85_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XP85_9BURK)

HSP 1 Score: 147 bits (370), Expect = 1.840e-38
Identity = 79/202 (39.11%), Postives = 120/202 (59.41%), Query Frame = 1 
Query:    1 LFNMAKQLGIEANLTPYGGGEDPWELLAELKRFRAESEGVVNEKDMSHFLELLGKLETNVEAQRLINQAHPEQLFGFFYLQFPLF--GANNVEVWIRYRSEENGGKTVESDDCALEFLVTTENLGELFFVVDIQGDLIDLSVGVESEDVREFVSRYLPLLQERIEQQDWVAGNFTCSVRGSEKRELVEHTDFSRLESCNVQA 600
            LF++A+Q GIE ++    G E  W+LLA ++  RA   G   +  +   L L+ +LE N+ A +LINQA P+    F+YLQ PL      + EVWIRYR  E+G + V+ +D  +EFLV+T+NLG+L   +++    + + +G + E+V  FV R L +L ERI +  W+ G    ++R    R LVEH + + LE+ NVQA
Sbjct:  265 LFDLARQAGIETHVALQSGSEPDWDLLAVMRDLRAALAG--QDAGLEGVLGLMARLEENLRALQLINQARPDAGLAFYYLQVPLRLDRGESAEVWIRYRIAEDGSRLVDPEDLRVEFLVSTQNLGDLSCTLEVTRRAVHVDLGSDCEEVCLFVERSLGVLAERIAESGWLPGRLGATLRPFTGRALVEHQELNSLETVNVQA 464
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8194.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Z9PQ84_9BACT3.110e-4244.39Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7X8XP85_9BURK1.840e-3839.11Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8194contigP-wetherbeei_contig8194:2145..2747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1297581.H919_08193
Model size603
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000206
EggNOG OGsCOG1196@1|root,COG1196@2|Bacteria,1V28X@1239|Firmicutes,4HDV9@91061|Bacilli
Descriptionnuclear chromosome segregation
Cds size594
COG categoryD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187025.3727746-CDS-P-wetherbeei_contig8194:2144..27381683187025.3727746-CDS-P-wetherbeei_contig8194:2144..2738Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8194 2145..2738 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187025.3821723-UTR-P-wetherbeei_contig8194:2738..27471683187025.3821723-UTR-P-wetherbeei_contig8194:2738..2747Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8194 2739..2747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8194.3.1prot_P-wetherbeei_contig8194.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8194 2145..2738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8194.3.1

>prot_P-wetherbeei_contig8194.3.1 ID=prot_P-wetherbeei_contig8194.3.1|Name=mRNA_P-wetherbeei_contig8194.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=198bp
MAKQLGIEANLTPYGGGEDPWELLAELKRFRAESEGVVNEKDMSHFLELL
GKLETNVEAQRLINQAHPEQLFGFFYLQFPLFGANNVEVWIRYRSEENGG
KTVESDDCALEFLVTTENLGELFFVVDIQGDLIDLSVGVESEDVREFVSR
YLPLLQERIEQQDWVAGNFTCSVRGSEKRELVEHTDFSRLESCNVQA*
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mRNA from alignment at P-wetherbeei_contig8194:2145..2747-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8194.3.1 ID=mRNA_P-wetherbeei_contig8194.3.1|Name=mRNA_P-wetherbeei_contig8194.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig8194:2145..2747- (Phaeothamnion wetherbeei SAG_119_79)
CTTTTCAATATGGCCAAGCAGCTGGGTATCGAAGCCAACTTAACGCCCTA
CGGTGGGGGAGAAGACCCCTGGGAACTGCTCGCCGAACTCAAGCGCTTTC
GCGCCGAAAGCGAGGGAGTGGTCAATGAAAAGGATATGAGCCACTTCTTG
GAGCTTCTGGGCAAGCTGGAGACCAATGTGGAGGCTCAGCGACTCATCAA
TCAGGCTCACCCCGAGCAGCTCTTCGGATTCTTTTATCTGCAGTTTCCGC
TCTTTGGCGCGAACAACGTCGAAGTTTGGATTCGCTACCGCAGCGAAGAA
AACGGCGGCAAAACGGTGGAGAGCGACGATTGCGCTCTCGAGTTCCTGGT
CACGACCGAGAATCTCGGTGAGTTGTTCTTTGTGGTCGATATCCAGGGAG
ATCTCATCGACCTCTCGGTAGGGGTCGAATCTGAAGACGTGCGCGAGTTC
GTCTCCCGCTATCTGCCTCTGCTGCAAGAGCGAATCGAACAGCAAGACTG
GGTGGCGGGGAACTTCACCTGCAGCGTCCGAGGTAGCGAGAAACGAGAAT
TGGTGGAGCATACAGATTTCTCCCGACTGGAGAGCTGCAATGTCCAGGCC
TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8194:2145..2747-

>mRNA_P-wetherbeei_contig8194.3.1 ID=mRNA_P-wetherbeei_contig8194.3.1|Name=mRNA_P-wetherbeei_contig8194.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=594bp|location=Sequence derived from alignment at P-wetherbeei_contig8194:2145..2747- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAAGCAGCTGGGTATCGAAGCCAACTTAACGCCCTACGGTGGGGG
AGAAGACCCCTGGGAACTGCTCGCCGAACTCAAGCGCTTTCGCGCCGAAA
GCGAGGGAGTGGTCAATGAAAAGGATATGAGCCACTTCTTGGAGCTTCTG
GGCAAGCTGGAGACCAATGTGGAGGCTCAGCGACTCATCAATCAGGCTCA
CCCCGAGCAGCTCTTCGGATTCTTTTATCTGCAGTTTCCGCTCTTTGGCG
CGAACAACGTCGAAGTTTGGATTCGCTACCGCAGCGAAGAAAACGGCGGC
AAAACGGTGGAGAGCGACGATTGCGCTCTCGAGTTCCTGGTCACGACCGA
GAATCTCGGTGAGTTGTTCTTTGTGGTCGATATCCAGGGAGATCTCATCG
ACCTCTCGGTAGGGGTCGAATCTGAAGACGTGCGCGAGTTCGTCTCCCGC
TATCTGCCTCTGCTGCAAGAGCGAATCGAACAGCAAGACTGGGTGGCGGG
GAACTTCACCTGCAGCGTCCGAGGTAGCGAGAAACGAGAATTGGTGGAGC
ATACAGATTTCTCCCGACTGGAGAGCTGCAATGTCCAGGCCTGA
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