mRNA_P-wetherbeei_contig819.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig819.1.1
Unique NamemRNA_P-wetherbeei_contig819.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig819.1.1 vs. uniprot
Match: D7G1P7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P7_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 6.500e-7
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 2 
Query: 1424 GMQSVGAVLNEMG-------FKGDGGDDGAENSASPFGAGGARQQEFRAAAQKALGYLIKHRGGAGWGRGRLRDPEVAEMEAAISEVRGLMKED 1684
            G+QSVG  L++MG       F  + G    E   S    GG+  +E +AAA KALGYL+KHRGG G+GRG++   +   M AA++EV  +M+E+
Sbjct:  678 GIQSVGGALSDMGVAKKPASFLPEEG----EGDGSAGWTGGSLGEEEKAAASKALGYLLKHRGGKGYGRGKMTGAQAEAMVAALAEVTEIMEEE 767
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig819.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1P7_ECTSI6.500e-742.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig819contigP-wetherbeei_contig819:18..1801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1784
Hectar predicted targeting categoryother localisation
Exons1
Cds size1548
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187025.0891333-UTR-P-wetherbeei_contig819:17..1741683187025.0891333-UTR-P-wetherbeei_contig819:17..174Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig819 18..174 +
1683187025.110965-UTR-P-wetherbeei_contig819:1722..18011683187025.110965-UTR-P-wetherbeei_contig819:1722..1801Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig819 1723..1801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187025.1008415-CDS-P-wetherbeei_contig819:174..17221683187025.1008415-CDS-P-wetherbeei_contig819:174..1722Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig819 175..1722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig819.1.1prot_P-wetherbeei_contig819.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig819 175..1722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig819.1.1

>prot_P-wetherbeei_contig819.1.1 ID=prot_P-wetherbeei_contig819.1.1|Name=mRNA_P-wetherbeei_contig819.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=516bp
MPATPVPALSSYTERLARAKARKAGAKKSSPPAPAAKAVQPLPPPLPSRQ
APSAPAAPPRAMPVASSGVVGSDSGSDPLDVGERITEVLTLLTEWHRDGL
EGVDKVAALRTALVNAREGMCLETYPEGIPAMPAAAVAAKALARPTAVPA
APPSPAAEVVAAAAAAVAAAAAPAVPAAPALRAPSIPAQQQQRAEGVGVA
TALGVNIGGDGSKTEDAVEAAREALEQRLRSCPGNTAGAATLGSTLLAAS
EALRAETFGAGAAPSSSARRMPAAAASSARPAAAVPAMPVLVGEQALRRC
NALLMARLQGDISGAELTALRDALVASLAAVELELTGAVAVPAAAVAAVE
AVAPAAVAAAIAPAAPAKVAGKSAASPPKKRTGDSISAQVARGEAAIHAR
GPPPRAPKAAAGAPARPKDGPAGMQSVGAVLNEMGFKGDGGDDGAENSAS
PFGAGGARQQEFRAAAQKALGYLIKHRGGAGWGRGRLRDPEVAEMEAAIS
EVRGLMKEDADYHQP*
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mRNA from alignment at P-wetherbeei_contig819:18..1801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig819.1.1 ID=mRNA_P-wetherbeei_contig819.1.1|Name=mRNA_P-wetherbeei_contig819.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1784bp|location=Sequence derived from alignment at P-wetherbeei_contig819:18..1801+ (Phaeothamnion wetherbeei SAG_119_79)
CAACCCCTACGTCGGCGCTGCAGCCGCAGCCGCAGCGCCGGTTCCGCCGC
TGCCGCCGCCGCCGCCGCCGCCAGTCGTCAAGCATCCGGTTGCCGCGGCG
GCATCGGCGGCGCCGGTGGCGCCGGCGGCTGCGCCGGCTCCGCCACCGCC
AGCAGCGATGCCTGCAACGCCGGTTCCGGCCCTGTCGAGCTACACAGAGC
GGTTGGCGCGGGCAAAAGCACGCAAGGCCGGCGCCAAGAAGTCTTCTCCA
CCAGCGCCGGCGGCCAAGGCTGTTCAACCGCTGCCGCCACCACTACCGTC
ACGGCAGGCACCGTCCGCTCCTGCCGCGCCGCCGCGGGCTATGCCTGTCG
CGAGCAGCGGCGTTGTCGGCAGCGACAGCGGCAGCGACCCGCTGGATGTC
GGGGAGCGCATCACGGAGGTACTGACGCTGCTGACAGAGTGGCACCGCGA
TGGGCTGGAGGGCGTCGACAAGGTGGCGGCGCTGCGGACGGCACTCGTCA
ACGCGCGGGAAGGGATGTGCCTCGAGACTTACCCCGAAGGGATTCCGGCA
ATGCCTGCCGCTGCGGTGGCAGCAAAGGCACTGGCGAGGCCGACGGCGGT
GCCGGCGGCACCGCCGAGTCCGGCGGCGGAGGTGGTTGCGGCGGCGGCGG
CGGCGGTTGCGGCAGCGGCGGCGCCAGCAGTACCAGCGGCACCGGCGCTG
CGAGCTCCATCGATACCAGCTCAACAGCAACAGCGCGCGGAGGGGGTCGG
CGTGGCGACGGCGCTGGGGGTTAACATTGGCGGCGACGGCTCGAAGACCG
AGGACGCCGTGGAGGCGGCACGGGAGGCGTTGGAGCAGCGGCTTCGCAGC
TGCCCGGGCAACACCGCAGGGGCGGCCACGTTGGGGAGCACGCTGCTGGC
CGCTAGCGAAGCCTTGCGGGCGGAAACGTTCGGGGCCGGCGCGGCTCCTT
CCTCCTCCGCGCGACGGATGCCCGCGGCGGCGGCATCCTCGGCAAGGCCT
GCCGCAGCTGTCCCCGCCATGCCGGTCTTGGTGGGGGAACAGGCGCTGCG
GCGGTGCAACGCGCTGCTGATGGCGCGCCTCCAAGGCGATATCAGCGGCG
CGGAACTGACCGCTCTGAGGGACGCGCTGGTCGCCTCGCTGGCTGCCGTG
GAGCTCGAGCTGACCGGCGCCGTGGCGGTTCCGGCGGCGGCCGTGGCGGC
GGTGGAGGCGGTGGCTCCGGCAGCGGTGGCGGCCGCAATCGCTCCGGCGG
CACCAGCTAAAGTAGCGGGAAAGTCGGCTGCTTCGCCCCCCAAAAAGCGG
ACGGGAGACAGCATCAGCGCGCAGGTGGCACGAGGGGAAGCGGCCATCCA
CGCCAGAGGCCCGCCGCCGCGCGCGCCGAAGGCGGCGGCCGGGGCACCGG
CGCGTCCCAAGGACGGCCCGGCGGGTATGCAGTCCGTCGGCGCAGTGCTG
AACGAAATGGGGTTCAAGGGGGACGGCGGCGACGACGGGGCCGAGAATTC
CGCATCCCCCTTCGGCGCGGGGGGCGCGCGGCAGCAAGAATTCCGCGCGG
CGGCGCAGAAAGCGCTGGGTTACCTGATCAAACACCGCGGCGGCGCCGGG
TGGGGGCGGGGCCGGCTGCGGGATCCCGAGGTGGCGGAGATGGAAGCGGC
GATCAGCGAGGTGCGCGGCCTGATGAAGGAGGACGCGGATTACCACCAAC
CGTGAGCATTAAGGCGCTGATACCGCGAGGGAAAGCTGTCGTTAGAGCCT
TCTGTTGAAGCGATTAAAGGAGCAACCGCACCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig819:18..1801+

>mRNA_P-wetherbeei_contig819.1.1 ID=mRNA_P-wetherbeei_contig819.1.1|Name=mRNA_P-wetherbeei_contig819.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1548bp|location=Sequence derived from alignment at P-wetherbeei_contig819:18..1801+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGCAACGCCGGTTCCGGCCCTGTCGAGCTACACAGAGCGGTTGGC
GCGGGCAAAAGCACGCAAGGCCGGCGCCAAGAAGTCTTCTCCACCAGCGC
CGGCGGCCAAGGCTGTTCAACCGCTGCCGCCACCACTACCGTCACGGCAG
GCACCGTCCGCTCCTGCCGCGCCGCCGCGGGCTATGCCTGTCGCGAGCAG
CGGCGTTGTCGGCAGCGACAGCGGCAGCGACCCGCTGGATGTCGGGGAGC
GCATCACGGAGGTACTGACGCTGCTGACAGAGTGGCACCGCGATGGGCTG
GAGGGCGTCGACAAGGTGGCGGCGCTGCGGACGGCACTCGTCAACGCGCG
GGAAGGGATGTGCCTCGAGACTTACCCCGAAGGGATTCCGGCAATGCCTG
CCGCTGCGGTGGCAGCAAAGGCACTGGCGAGGCCGACGGCGGTGCCGGCG
GCACCGCCGAGTCCGGCGGCGGAGGTGGTTGCGGCGGCGGCGGCGGCGGT
TGCGGCAGCGGCGGCGCCAGCAGTACCAGCGGCACCGGCGCTGCGAGCTC
CATCGATACCAGCTCAACAGCAACAGCGCGCGGAGGGGGTCGGCGTGGCG
ACGGCGCTGGGGGTTAACATTGGCGGCGACGGCTCGAAGACCGAGGACGC
CGTGGAGGCGGCACGGGAGGCGTTGGAGCAGCGGCTTCGCAGCTGCCCGG
GCAACACCGCAGGGGCGGCCACGTTGGGGAGCACGCTGCTGGCCGCTAGC
GAAGCCTTGCGGGCGGAAACGTTCGGGGCCGGCGCGGCTCCTTCCTCCTC
CGCGCGACGGATGCCCGCGGCGGCGGCATCCTCGGCAAGGCCTGCCGCAG
CTGTCCCCGCCATGCCGGTCTTGGTGGGGGAACAGGCGCTGCGGCGGTGC
AACGCGCTGCTGATGGCGCGCCTCCAAGGCGATATCAGCGGCGCGGAACT
GACCGCTCTGAGGGACGCGCTGGTCGCCTCGCTGGCTGCCGTGGAGCTCG
AGCTGACCGGCGCCGTGGCGGTTCCGGCGGCGGCCGTGGCGGCGGTGGAG
GCGGTGGCTCCGGCAGCGGTGGCGGCCGCAATCGCTCCGGCGGCACCAGC
TAAAGTAGCGGGAAAGTCGGCTGCTTCGCCCCCCAAAAAGCGGACGGGAG
ACAGCATCAGCGCGCAGGTGGCACGAGGGGAAGCGGCCATCCACGCCAGA
GGCCCGCCGCCGCGCGCGCCGAAGGCGGCGGCCGGGGCACCGGCGCGTCC
CAAGGACGGCCCGGCGGGTATGCAGTCCGTCGGCGCAGTGCTGAACGAAA
TGGGGTTCAAGGGGGACGGCGGCGACGACGGGGCCGAGAATTCCGCATCC
CCCTTCGGCGCGGGGGGCGCGCGGCAGCAAGAATTCCGCGCGGCGGCGCA
GAAAGCGCTGGGTTACCTGATCAAACACCGCGGCGGCGCCGGGTGGGGGC
GGGGCCGGCTGCGGGATCCCGAGGTGGCGGAGATGGAAGCGGCGATCAGC
GAGGTGCGCGGCCTGATGAAGGAGGACGCGGATTACCACCAACCGTGA
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