mRNA_P-wetherbeei_contig8184.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8184.3.1
Unique NamemRNA_P-wetherbeei_contig8184.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8184.3.1 vs. uniprot
Match: A0A7S0FV88_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FV88_9DINO)

HSP 1 Score: 74.7 bits (182), Expect = 1.330e-14
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   28 LHAAARAGEVAKAEAILSALSFHDAKDLCNNADKHKRSPLHIAAWAGKPEVIALLLRYRADVHAKAGDNFEALHFAAQQGNAEV 279
            LH AARAG+VA+ EA+L+  +     D    AD+H+R+PLH+AA++GK   +  LL  RAD   +A D F  LHFAAQ G+ EV
Sbjct:   20 LHEAARAGDVARLEALLAGAAEDRGPD---EADQHRRTPLHLAAFSGKAAAVERLLELRADAQREAMDGFLPLHFAAQAGHIEV 100          
BLAST of mRNA_P-wetherbeei_contig8184.3.1 vs. uniprot
Match: A0A812PUQ1_9DINO (Ripk4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PUQ1_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 9.010e-14
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   13 NHSTGLHAAARAGEVAKAEAILSALSFHDAKDLCNNADKHKRSPLHIAAWAGKPEVIALLLRYRADVHAKAGDNFEALHFAAQQGNAEV 279
            N ST LH AARAG++AK + +L+      AK+L N AD+HKR+PLH+AA+ GK E +A LL   A    +A D F  LHFAAQ G+ EV
Sbjct:   44 NTSTELHDAARAGDLAKLDELLA--DEEKAKEL-NQADQHKRTPLHMAAFFGKSEAVAKLLEKGASPTLEAMDGFLPLHFAAQAGHLEV 129          
BLAST of mRNA_P-wetherbeei_contig8184.3.1 vs. uniprot
Match: A0A7S0ZMK3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZMK3_NOCSC)

HSP 1 Score: 69.3 bits (168), Expect = 9.210e-12
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   19 STGLHAAARAGEVAKAEAILSALSFHDAKDLCNNADKHKRSPLHIAAWAGKPEVIALLLRYRADVHAKAGDNFEALHFAAQQGNAEV 279
            +T LHAAAR G+  K +A+L       A DL + AD+H+R+PLH+A + GK      LL  RAD   +A D   A HFAAQQG+ EV
Sbjct:    9 ATDLHAAARLGDNDKVQALLR--GSDKACDLIDAADRHRRTPLHLACYFGKTSTAESLLNARADFGLEANDGCLASHFAAQQGHKEV 93          
BLAST of mRNA_P-wetherbeei_contig8184.3.1 vs. uniprot
Match: UPI000A29ABE7 (ankyrin repeat domain-containing protein 29 n=4 Tax=Camelineae TaxID=980083 RepID=UPI000A29ABE7)

HSP 1 Score: 65.5 bits (158), Expect = 9.110e-11
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   19 STGLHAAARAGEVAKAEAILSALSFHDAKDLCNNADKHKRSPLHIAAWAGKPEVIALLLRYRADVHAKAGDNFEA 243
            S  LH+AAR+G++A  ++ILS+          N+ DKH R+PLH+AAWAG  EV++ L + +ADV A AGD+  A
Sbjct:   14 SADLHSAARSGDLAAVQSILSSNPL-----AVNSRDKHSRTPLHLAAWAGHNEVVSYLCKNKADVGAAAGDDMGA 83          
BLAST of mRNA_P-wetherbeei_contig8184.3.1 vs. uniprot
Match: UPI001CB9630B (protein phosphatase 1 regulatory subunit 12A n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9630B)

HSP 1 Score: 65.5 bits (158), Expect = 9.920e-11
Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   28 LHAAARAGEVAKAEAILSALSFHDAKDLCNNADKHKRSPLHIAAWAGKPEVIALLLRYR-ADVHAKAGDNFEALHFAAQQGNAEV 279
            +H AAR+G++   + I+++          N+ DKH R+PLH+AA+AG+ +V+ LL + +  DV A A D+  A+HFAAQ+G+ EV
Sbjct:   12 IHGAARSGDIVSVQTIINSNPLS-----VNSRDKHSRTPLHLAAFAGQTQVVNLLCKNKMVDVGAAAMDDMGAIHFAAQKGHLEV 91          
BLAST of mRNA_P-wetherbeei_contig8184.3.1 vs. uniprot
Match: Q8GX17_ARATH (Ankyrin repeat family protein n=4 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q8GX17_ARATH)

HSP 1 Score: 64.7 bits (156), Expect = 1.810e-10
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   19 STGLHAAARAGEVAKAEAILSALSFHDAKDLCNNADKHKRSPLHIAAWAGKPEVIALLLRYRADVHAKAGDNFEA 243
            S  LH+AAR+G++A  ++I+S+          N+ DKH R+PLH+AAWAG  EV++ L + +ADV A AGD+  A
Sbjct:   17 SADLHSAARSGDLAAVQSIISSNPL-----AVNSRDKHSRTPLHLAAWAGHNEVVSYLCKNKADVGAAAGDDMGA 86          
BLAST of mRNA_P-wetherbeei_contig8184.3.1 vs. uniprot
Match: A0A1Q3CAB3_CEPFO (Ank_2 domain-containing protein n=4 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CAB3_CEPFO)

HSP 1 Score: 64.3 bits (155), Expect = 2.430e-10
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   28 LHAAARAGEVAKAEAILSALSFHDAKDLCNNADKHKRSPLHIAAWAGKPEVIALLLRYRADVHAKAGDNFEAL 246
            LHAAAR+GE+   E+IL++          N+ DKH R+PLH+AAWAG+ EV++ L  ++ADV A A D+  A+
Sbjct:    7 LHAAARSGELEAVESILNSNPL-----AVNSRDKHSRTPLHLAAWAGQTEVVSYLCNHKADVGAAAMDDMGAI 74          
BLAST of mRNA_P-wetherbeei_contig8184.3.1 vs. uniprot
Match: A0A6P4M733_GOSAR (tankyrase-2 n=15 Tax=Gossypium TaxID=3633 RepID=A0A6P4M733_GOSAR)

HSP 1 Score: 63.5 bits (153), Expect = 4.670e-10
Identity = 31/73 (42.47%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   28 LHAAARAGEVAKAEAILSALSFHDAKDLCNNADKHKRSPLHIAAWAGKPEVIALLLRYRADVHAKAGDNFEAL 246
            +HAAAR+G+++K ++IL++          N+ DKH R+PLH+AAWAG+ +V++ L +++ADV A A D+  A+
Sbjct:    6 IHAAARSGDLSKLQSILASNPL-----AVNSRDKHSRTPLHLAAWAGQAQVVSYLCKHKADVGAAAMDDMGAI 73          
BLAST of mRNA_P-wetherbeei_contig8184.3.1 vs. uniprot
Match: A0A816RAM6_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816RAM6_BRANA)

HSP 1 Score: 62.4 bits (150), Expect = 6.560e-10
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    4 GDKNHSTGLHAAARAGEVAKAEAILSALSFHDAKDLCNNADKHKRSPLHIAAWAGKPEVIALLLRYRADVHAKAGDNFEAL 246
            G    S  LH+AAR+G++A  + I+S+          N+ DKH R+PLH+AAWAG  EV++ L + +ADV A A D+  A+
Sbjct:    8 GKSGASADLHSAARSGDLAAVQLIISSNPL-----AVNSRDKHSRTPLHLAAWAGHSEVVSYLCKNKADVGAAAVDDMGAI 83          
BLAST of mRNA_P-wetherbeei_contig8184.3.1 vs. uniprot
Match: A0A565CFH4_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CFH4_9BRAS)

HSP 1 Score: 63.2 bits (152), Expect = 7.840e-10
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    4 GDKNHSTGLHAAARAGEVAKAEAILSALSFHDAKDLCNNADKHKRSPLHIAAWAGKPEVIALLLRYRADVHAKAGDNFEA 243
            G +  S  LH+AAR+G++A  ++I+S+          N+ DKH R+PLH+AAWAG  EV++ L + +ADV A A D+  A
Sbjct:   10 GRRGESADLHSAARSGDLAAVQSIISSNPL-----AVNSRDKHSRTPLHLAAWAGHNEVVSYLCKNKADVGAAAVDDMGA 84          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8184.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0FV88_9DINO1.330e-1448.81Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A812PUQ1_9DINO9.010e-1451.69Ripk4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S0ZMK3_NOCSC9.210e-1247.13Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
UPI000A29ABE79.110e-1146.67ankyrin repeat domain-containing protein 29 n=4 Ta... [more]
UPI001CB9630B9.920e-1141.18protein phosphatase 1 regulatory subunit 12A n=1 T... [more]
Q8GX17_ARATH1.810e-1045.33Ankyrin repeat family protein n=4 Tax=Arabidopsis ... [more]
A0A1Q3CAB3_CEPFO2.430e-1046.58Ank_2 domain-containing protein n=4 Tax=Cephalotus... [more]
A0A6P4M733_GOSAR4.670e-1042.47tankyrase-2 n=15 Tax=Gossypium TaxID=3633 RepID=A0... [more]
A0A816RAM6_BRANA6.560e-1041.98(rape) hypothetical protein n=1 Tax=Brassica napus... [more]
A0A565CFH4_9BRAS7.840e-1042.50Uncharacterized protein n=1 Tax=Arabis nemorensis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8184contigP-wetherbeei_contig8184:1736..2014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4536.ONIVA10G22130.1
PFAMsAnk_2,Ank_4,Ank_5
Model size279
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.95e-13
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,37N8G@33090|Viridiplantae,3GAYC@35493|Streptophyta,3M12A@4447|Liliopsida,3I7M3@38820|Poales
Ec32 ortholog descriptionion channel nompc, putative
Ec32 orthologEc-01_001220.1
DescriptionAnkyrin repeat
Cds size279
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187024.7767513-CDS-P-wetherbeei_contig8184:1735..20141683187024.7767513-CDS-P-wetherbeei_contig8184:1735..2014Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8184 1736..2014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8184.3.1prot_P-wetherbeei_contig8184.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8184 1736..2014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8184.3.1

>prot_P-wetherbeei_contig8184.3.1 ID=prot_P-wetherbeei_contig8184.3.1|Name=mRNA_P-wetherbeei_contig8184.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MGDKNHSTGLHAAARAGEVAKAEAILSALSFHDAKDLCNNADKHKRSPLH
IAAWAGKPEVIALLLRYRADVHAKAGDNFEALHFAAQQGNAEV
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mRNA from alignment at P-wetherbeei_contig8184:1736..2014+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8184.3.1 ID=mRNA_P-wetherbeei_contig8184.3.1|Name=mRNA_P-wetherbeei_contig8184.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig8184:1736..2014+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGACAAAAATCACTCCACCGGCCTTCACGCGGCAGCGCGGGCTGG CGAAGTCGCGAAGGCGGAAGCCATTCTCTCGGCTCTCTCATTCCACGATG CGAAGGACCTGTGCAACAATGCTGATAAACACAAGCGTTCTCCTCTTCAT ATTGCGGCTTGGGCGGGCAAGCCCGAGGTAATCGCACTACTGCTTCGCTA CAGGGCTGACGTTCACGCCAAGGCTGGAGACAATTTTGAGGCCCTCCACT TTGCCGCCCAGCAGGGAAACGCAGAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8184:1736..2014+

>mRNA_P-wetherbeei_contig8184.3.1 ID=mRNA_P-wetherbeei_contig8184.3.1|Name=mRNA_P-wetherbeei_contig8184.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig8184:1736..2014+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGACAAAAATCACTCCACCGGCCTTCACGCGGCAGCGCGGGCTGG
CGAAGTCGCGAAGGCGGAAGCCATTCTCTCGGCTCTCTCATTCCACGATG
CGAAGGACCTGTGCAACAATGCTGATAAACACAAGCGTTCTCCTCTTCAT
ATTGCGGCTTGGGCGGGCAAGCCCGAGGTAATCGCACTACTGCTTCGCTA
CAGGGCTGACGTTCACGCCAAGGCTGGAGACAATTTTGAGGCCCTCCACT
TTGCCGCCCAGCAGGGAAACGCAGAGGTG
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