mRNA_P-wetherbeei_contig8151.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8151.1.1
Unique NamemRNA_P-wetherbeei_contig8151.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8151.1.1 vs. uniprot
Match: A0A835ZEU5_9STRA (Ribosomal protein L21e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEU5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.180e-26
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 NGRILEKRINVRVEHVHPSKCRDELKKRIKENQVAKVAAKGGAPKVSLKRQPRQPKEAFVLTAPG-DAETIQALPFVDLV 237
            NGRIL+K I VRVEH+ PSKCRDELK+R+KEN+  K AA+ GA + +LKRQP+QPK A+ L   G   ETIQALPFVDLV
Sbjct:   81 NGRILKKAITVRVEHIRPSKCRDELKRRVKENEAIKAAARAGAERQNLKRQPKQPKGAYTLVTNGAKPETIQALPFVDLV 160          
BLAST of mRNA_P-wetherbeei_contig8151.1.1 vs. uniprot
Match: A0A6H5K4I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I4_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.360e-24
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 NGRILEKRINVRVEHVHPSKCRDELKKRIKENQVAKVAAKGGAPKVSLKRQPRQPKEAFVLT-APGDAETIQALPFVDLV 237
            NGRI+ K+I+VRVEHV PSKCRDE+K+R+KEN+ AK AA+ G  K  LKR P QPK A+V++    D ETIQALPFVDLV
Sbjct:   81 NGRIISKQIHVRVEHVSPSKCRDEMKRRVKENEAAKKAAREGGEKQVLKRSPTQPKGAYVVSMGDQDVETIQALPFVDLV 160          
BLAST of mRNA_P-wetherbeei_contig8151.1.1 vs. uniprot
Match: A0A7S3NED9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NED9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.790e-21
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 NGRILEKRINVRVEHVHPSKCRDELKKRIKENQVAKVAAKGGAPKVSLKRQPRQPKEAFVLTAPGDAETIQALPFVDLV 237
            NGRI+ K +NVRVEHV PSKCR EL +R+K N+ AK  A+    KV LKR P+QPK+ FV+  P   ET+Q +PF DLV
Sbjct:   81 NGRIINKHLNVRVEHVTPSKCRSELIERVKTNEAAKQKARESGEKVPLKRVPKQPKDGFVIAIPEQPETMQPIPFSDLV 159          
BLAST of mRNA_P-wetherbeei_contig8151.1.1 vs. uniprot
Match: A0A6U1KHN8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1KHN8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.590e-21
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 NGRILEKRINVRVEHVHPSKCRDELKKRIKENQVAKVAAKGGAPKVSLKRQPRQPKEAFVLTAPGDAETIQALPFVDL 234
            NGRI+ K +NVRVEHV PSKCRD+LK R+  N+  K AA+ G  + +LKRQP QPK  F +  P +  TIQ +PF DL
Sbjct:   81 NGRIINKHLNVRVEHVIPSKCRDDLKARVARNEELKKAARAGGARAALKRQPAQPKGGFTIALPAEVTTIQPIPFSDL 158          
BLAST of mRNA_P-wetherbeei_contig8151.1.1 vs. uniprot
Match: K0SIK6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIK6_THAOC)

HSP 1 Score: 89.0 bits (219), Expect = 8.710e-21
Identity = 49/82 (59.76%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 NGRILEKRINVRVEHVHPSKCRDELKKRIKENQVAKVAAKGGAPKVSLKRQPRQPKEAFVLTAPG-DAE--TIQALPFVDLV 237
            NGRILEKRI+VR+EH+  SKC+ E+ +R+K N+ AK AA+ G  KV LKR P+ PKE + L APG D E  TIQ LPF DLV
Sbjct:   68 NGRILEKRIHVRIEHIRKSKCQKEIIERVKSNEAAKKAAREGGEKVVLKRLPKAPKEGYFLAAPGGDGEITTIQPLPFSDLV 149          
BLAST of mRNA_P-wetherbeei_contig8151.1.1 vs. uniprot
Match: B5YNM6_THAPS (RL21, ribosomal protein 21, 60S large ribosomal subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNM6_THAPS)

HSP 1 Score: 87.8 bits (216), Expect = 3.420e-20
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 NGRILEKRINVRVEHVHPSKCRDELKKRIKENQVAKVAAKGGAPKVSLKRQPRQPKEAFVLTAPG-DAE--TIQALPFVDLV 237
            NGRILEKRI+VR+EH+  SKC+ E+  R+K N++AK  A+    KV LKR P+QPKE + L APG D E  TIQ LPF DLV
Sbjct:   81 NGRILEKRIHVRIEHIRKSKCQKEIIARVKSNELAKAEARKTGVKVDLKRHPKQPKEGYFLAAPGGDGEITTIQPLPFSDLV 162          
BLAST of mRNA_P-wetherbeei_contig8151.1.1 vs. uniprot
Match: A0A7S4MUJ5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MUJ5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.910e-20
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 NGRILEKRINVRVEHVHPSKCRDELKKRIKENQVAKVAAKGGAPKVSLKRQPRQPKEAFVLTAPG--DAE--TIQALPFVDLV 237
            NGRILEKRI+VR+EHV PSKC+ E+  R   N+ AK  A+    KV+LKRQP+QPKEA+ L  PG  DAE  TIQ LPF DLV
Sbjct:   81 NGRILEKRIHVRIEHVRPSKCQKEILARKVANEEAKKKARETGVKVNLKRQPKQPKEAYFLQNPGGDDAEITTIQPLPFSDLV 163          
BLAST of mRNA_P-wetherbeei_contig8151.1.1 vs. uniprot
Match: F0YGM5_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGM5_AURAN)

HSP 1 Score: 84.0 bits (206), Expect = 1.020e-18
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 NGRILEKRINVRVEHVHPSKCRDELKKRIKENQVAKVAAKGGAPKVSLKRQPRQPKEAFVLTAPGDAETIQALPFVDL 234
            NGRI+ K +NVRVEHV PSKC+++L  R+  N+  K  AK    KV+LKRQP QPK  FV+TA  +  TIQ +PF DL
Sbjct:   81 NGRIINKHLNVRVEHVTPSKCQNDLIARVARNEKLKKEAKQSGTKVALKRQPTQPKAGFVITASEEPTTIQPIPFSDL 158          
BLAST of mRNA_P-wetherbeei_contig8151.1.1 vs. uniprot
Match: A0A7S2XXW3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXW3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.480e-18
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 NGRILEKRINVRVEHVHPSKCRDELKKRIKENQVAKVAAKGGAPKVSLKRQPRQPKEAFVL-TAPGDAETIQALPFVDLV 237
            NGR++ K++ VRVEHVHPSKC+ E+ +R KEN+ AKV A+    KV+L+R P+QPKE + L     + +TIQ LPFVDL+
Sbjct:   81 NGRVIIKKVVVRVEHVHPSKCQSEIIRRKKENEAAKVEARKTGVKVNLRRIPKQPKEGYFLKNRDAEIQTIQPLPFVDLL 160          
BLAST of mRNA_P-wetherbeei_contig8151.1.1 vs. uniprot
Match: A0A7S2W5V8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W5V8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.100e-18
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 NGRILEKRINVRVEHVHPSKCRDELKKRIKENQVAKVAAKGGAPKVSLKRQPRQPKEAFVLTAPGD---AETIQALPFVDLV 237
            NGRI+EKRI+VR+EH+ PSKC+ E+  R   N+ AK AA     KV+LKRQP+ PKEA+ ++A G      TIQ LPF DL+
Sbjct:   81 NGRIIEKRIHVRIEHIRPSKCQKEIIARKASNEAAKKAAAESGEKVNLKRQPKAPKEAYFVSAAGGDGVVTTIQPLPFSDLI 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8151.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEU5_9STRA4.180e-2666.25Ribosomal protein L21e-domain-containing protein n... [more]
A0A6H5K4I4_9PHAE1.360e-2465.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3NED9_9STRA2.790e-2156.96Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6U1KHN8_9STRA5.590e-2155.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K0SIK6_THAOC8.710e-2159.76Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B5YNM6_THAPS3.420e-2058.54RL21, ribosomal protein 21, 60S large ribosomal su... [more]
A0A7S4MUJ5_9STRA9.910e-2061.45Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
F0YGM5_AURAN1.020e-1855.13Uncharacterized protein n=2 Tax=Aureococcus anopha... [more]
A0A7S2XXW3_9STRA1.480e-1853.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2W5V8_9STRA3.100e-1853.66Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8151contigP-wetherbeei_contig8151:4..243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0SIK6
PFAMsRibosomal_L21e
Model size240
Max annot lvl2836|Bacillariophyta
KEGG koko:K02889
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.43e-21
EggNOG OGsCOG2139@1|root,KOG1732@2759|Eukaryota,2XC1C@2836|Bacillariophyta
DescriptionRibosomal protein L21e
Cds size240
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187023.2209828-CDS-P-wetherbeei_contig8151:3..2431683187023.2209828-CDS-P-wetherbeei_contig8151:3..243Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8151 4..243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8151.1.1prot_P-wetherbeei_contig8151.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8151 4..243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8151.1.1

>prot_P-wetherbeei_contig8151.1.1 ID=prot_P-wetherbeei_contig8151.1.1|Name=mRNA_P-wetherbeei_contig8151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
NGRILEKRINVRVEHVHPSKCRDELKKRIKENQVAKVAAKGGAPKVSLKR
QPRQPKEAFVLTAPGDAETIQALPFVDLV*
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mRNA from alignment at P-wetherbeei_contig8151:4..243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8151.1.1 ID=mRNA_P-wetherbeei_contig8151.1.1|Name=mRNA_P-wetherbeei_contig8151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig8151:4..243+ (Phaeothamnion wetherbeei SAG_119_79)
AACGGGCGCATCCTCGAGAAGCGGATCAATGTGCGCGTGGAGCACGTGCA CCCATCCAAGTGCCGCGACGAGCTCAAGAAGCGCATCAAGGAGAACCAGG TGGCCAAGGTGGCGGCCAAGGGTGGTGCCCCCAAAGTGTCGCTCAAGCGC CAGCCGCGGCAGCCCAAGGAGGCCTTCGTGCTGACAGCGCCCGGCGACGC CGAGACCATCCAGGCGCTGCCCTTCGTCGACCTTGTTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8151:4..243+

>mRNA_P-wetherbeei_contig8151.1.1 ID=mRNA_P-wetherbeei_contig8151.1.1|Name=mRNA_P-wetherbeei_contig8151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig8151:4..243+ (Phaeothamnion wetherbeei SAG_119_79)
AACGGGCGCATCCTCGAGAAGCGGATCAATGTGCGCGTGGAGCACGTGCA
CCCATCCAAGTGCCGCGACGAGCTCAAGAAGCGCATCAAGGAGAACCAGG
TGGCCAAGGTGGCGGCCAAGGGTGGTGCCCCCAAAGTGTCGCTCAAGCGC
CAGCCGCGGCAGCCCAAGGAGGCCTTCGTGCTGACAGCGCCCGGCGACGC
CGAGACCATCCAGGCGCTGCCCTTCGTCGACCTTGTTTAG
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