mRNA_P-wetherbeei_contig81.10.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig81.10.1
Unique NamemRNA_P-wetherbeei_contig81.10.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig81.10.1 vs. uniprot
Match: A0A3C0TXV9_9PROT (Transport permease protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXV9_9PROT)

HSP 1 Score: 405 bits (1042), Expect = 8.250e-141
Identity = 201/262 (76.72%), Postives = 230/262 (87.79%), Query Frame = 1
Query:   31 PPFGTARIHGVNWLGVWTLYVKEVRRFSNLYLQTILAPVVTTLLYFAIFALAIGSSRPAVHGVPFTVFLAPGLIMVAIIQNAFANTASSILGAKIQGNIVDLLMPPLSDSELAAAVIMGGVSRGIAVALANLIALSPFVSWQIPHPWAVVYFALMASICLSAGGLLAGIWSEKFDHMASVTNFVILPLSFLSGSFYSVALLPQAFQTINHFNPFFYLIDGMRYGFTGVSDSHIGVGMVVTALVAATLWITCYLVMKSGWRLK 816
            PP+G ARI GVNWLGV TL VKEVRRF+ LYLQTILAPVVTTLLYFAIF+LAIG SRPAVHG+PF  FLAPGLIMVAI+QNAFANTASSILG+K+QGNIVDLLMPPLS  E+A+AVI+GGV RG+AV +ANL+AL+PF    + HPWAV+YFALMAS+ LSA G+L+GIW+EKFDHMA+VTNF+ILPLSFLSGSFYSVALLP AFQ INHFNPFFYLIDGMR+GF GV+D  + +G VV  L AA LW  C+LV++SGWRLK
Sbjct:   11 PPYGRARITGVNWLGVRTLLVKEVRRFTGLYLQTILAPVVTTLLYFAIFSLAIGGSRPAVHGIPFITFLAPGLIMVAIVQNAFANTASSILGSKMQGNIVDLLMPPLSSGEVASAVILGGVCRGMAVGVANLVALAPFAGIDMAHPWAVIYFALMASVSLSAAGVLSGIWAEKFDHMAAVTNFIILPLSFLSGSFYSVALLPPAFQIINHFNPFFYLIDGMRFGFIGVADGPVLIGAVVCGLTAAVLWGVCHLVIRSGWRLK 272          
BLAST of mRNA_P-wetherbeei_contig81.10.1 vs. uniprot
Match: A0A351T1P0_9PROT (Transport permease protein n=6 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T1P0_9PROT)

HSP 1 Score: 357 bits (917), Expect = 8.600e-122
Identity = 173/260 (66.54%), Postives = 210/260 (80.77%), Query Frame = 1
Query:   37 FGTARIHGVNWLGVWTLYVKEVRRFSNLYLQTILAPVVTTLLYFAIFALAIGSSRPAVHGVPFTVFLAPGLIMVAIIQNAFANTASSILGAKIQGNIVDLLMPPLSDSELAAAVIMGGVSRGIAVALANLIALSPFVSWQIPHPWAVVYFALMASICLSAGGLLAGIWSEKFDHMASVTNFVILPLSFLSGSFYSVALLPQAFQTINHFNPFFYLIDGMRYGFTGVSDSHIGVGMVVTALVAATLWITCYLVMKSGWRLK 816
            FG   + GVNWLG+WTLYVKEV+RF NLYLQTI AP+VTTLLY AIF++A+G  RP +HG+ F  FLAPGLIM+AIIQNAFANT+SS+L AKIQGNIVDLLMPPLS +E+  A I+GGVSRGI V  A  +A+  FV +   H WA++YFA+M S+ LS  G LAGIW++KFDHMASVTNF+I+PLSFLSGSFYS++ LP  FQ I+HFNPFFYLIDG+RYGFTGV+D  + VG+ VTA +AA LW  C+ ++  GWRLK
Sbjct:   13 FGATHLQGVNWLGMWTLYVKEVQRFLNLYLQTIGAPIVTTLLYLAIFSIAVGRDRPDIHGISFIAFLAPGLIMMAIIQNAFANTSSSMLSAKIQGNIVDLLMPPLSSAEVTTAFILGGVSRGIVVGAATALAMLAFVDFAFAHIWAIIYFAVMGSLILSIIGTLAGIWADKFDHMASVTNFIIMPLSFLSGSFYSISRLPDLFQQISHFNPFFYLIDGIRYGFTGVADGSVAVGVAVTAGLAAILWWCCHKLLDRGWRLK 272          
BLAST of mRNA_P-wetherbeei_contig81.10.1 vs. uniprot
Match: A0A550K205_9PROT (Transport permease protein n=1 Tax=Glycocaulis profundi TaxID=2518983 RepID=A0A550K205_9PROT)

HSP 1 Score: 323 bits (827), Expect = 4.250e-108
Identity = 153/255 (60.00%), Postives = 198/255 (77.65%), Query Frame = 1
Query:   52 IHGVNWLGVWTLYVKEVRRFSNLYLQTILAPVVTTLLYFAIFALAIGSSRPAVHGVPFTVFLAPGLIMVAIIQNAFANTASSILGAKIQGNIVDLLMPPLSDSELAAAVIMGGVSRGIAVALANLIALSPFVSWQIPHPWAVVYFALMASICLSAGGLLAGIWSEKFDHMASVTNFVILPLSFLSGSFYSVALLPQAFQTINHFNPFFYLIDGMRYGFTGVSDSHIGVGMVVTALVAATLWITCYLVMKSGWRLK 816
            I  VNWLG+WTLY KEVRRF  +  QT+LAPV TTLL+  +F +AIG++RPAV GVPF VFLAPGL+M+ ++ N+FAN++SS++ AK+QGN VD LMPPLS  ELAAA I G V+RG+ V  A  I ++PF+   + H WAV Y+ L A++ LS  G++AGIW+EKFDH+A +TNF+I+PL+FLSG+FYSV +LP+ FQTI+HFNP FY+IDG RYGFTGVSD  + VGM+V A +   L + CY V+ SGWRLK
Sbjct:   19 IGAVNWLGLWTLYKKEVRRFLKVSFQTVLAPVATTLLFMTVFTIAIGAARPAVDGVPFAVFLAPGLVMMGLLNNSFANSSSSLIVAKVQGNTVDFLMPPLSAVELAAAFIGGAVTRGVLVGAATAICIAPFIDMSVAHAWAVAYYGLGAALMLSMIGVIAGIWAEKFDHLAVITNFIIMPLTFLSGTFYSVEILPEPFQTISHFNPVFYMIDGFRYGFTGVSDGSLLVGMLVVAAINIVLLVACYRVLASGWRLK 273          
BLAST of mRNA_P-wetherbeei_contig81.10.1 vs. uniprot
Match: A0A6N6VNG5_9HYPH (Transport permease protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VNG5_9HYPH)

HSP 1 Score: 313 bits (802), Expect = 2.570e-104
Identity = 156/262 (59.54%), Postives = 194/262 (74.05%), Query Frame = 1
Query:   31 PPFGTARIHGVNWLGVWTLYVKEVRRFSNLYLQTILAPVVTTLLYFAIFALAIGSSRPAVHGVPFTVFLAPGLIMVAIIQNAFANTASSILGAKIQGNIVDLLMPPLSDSELAAAVIMGGVSRGIAVALANLIALSPFVSWQIPHPWAVVYFALMASICLSAGGLLAGIWSEKFDHMASVTNFVILPLSFLSGSFYSVALLPQAFQTINHFNPFFYLIDGMRYGFTGVSDSHIGVGMVVTALVAATLWITCYLVMKSGWRLK 816
            P  G  R   VNWLG WTLY+KEVRRF  +  QTI+APV+TTLLY AIFAL++GS RPAVHGVPF  FLAPGLIM+ +IQNAFANT+SS+L +K+QGNIVD+LMPPLS  EL   + M GV+RG+ V L     + PFV   I H WAV++FA+ AS+ LS  G+L GIWSEKFDH+ +VTNF++LPL+FLSG+FYSV  LP     I H+NP FYLIDG RYGFTG +D  + +G+++T  V A LWI    + + G+RLK
Sbjct:   11 PESGVRRFGAVNWLGTWTLYLKEVRRFWKVLTQTIVAPVITTLLYLAIFALSVGSLRPAVHGVPFIEFLAPGLIMMTMIQNAFANTSSSLLISKVQGNIVDILMPPLSPGELNFGIAMAGVTRGVVVGLVTAAGMFPFVDMGIAHLWAVLFFAVGASLMLSLLGMLGGIWSEKFDHLQAVTNFIVLPLTFLSGTFYSVDQLPAFAHRITHWNPVFYLIDGFRYGFTGHADGSVQIGVILTIAVNAVLWIVSDRLFRRGYRLK 272          
BLAST of mRNA_P-wetherbeei_contig81.10.1 vs. uniprot
Match: UPI001EDCDD33 (ABC transporter permease n=1 Tax=Shewanella sp. ER-Te-42B-Light TaxID=2872342 RepID=UPI001EDCDD33)

HSP 1 Score: 312 bits (800), Expect = 8.310e-104
Identity = 145/252 (57.54%), Postives = 195/252 (77.38%), Query Frame = 1
Query:   61 VNWLGVWTLYVKEVRRFSNLYLQTILAPVVTTLLYFAIFALAIGSSRPAVHGVPFTVFLAPGLIMVAIIQNAFANTASSILGAKIQGNIVDLLMPPLSDSELAAAVIMGGVSRGIAVALANLIALSPFVSWQIPHPWAVVYFALMASICLSAGGLLAGIWSEKFDHMASVTNFVILPLSFLSGSFYSVALLPQAFQTINHFNPFFYLIDGMRYGFTGVSDSHIGVGMVVTALVAATLWITCYLVMKSGWRLK 816
            VNWLG+WTLY KEVRRF  ++ QT+LAPVVT+LL+  +F+LAIG+ R  + GV +  FLAPGL+M+ ++ NAFAN++SS++GAK+  N  D LMPPLS +ELAAA I G V+RG+ V +A  + ++PFV   + HPWAV YF L A++ +   G++AG+W+EKFDH+A VTNF+ILPL+FLSG+FYSV +LP+ F TI+H NP F+LIDG RYGF G  DSH+G+GM VTA +   L  +CYL+++SGWRLK
Sbjct:   35 VNWLGLWTLYKKEVRRFLKVHFQTVLAPVVTSLLFMIVFSLAIGAQRGEILGVAYASFLAPGLVMLGVLNNAFANSSSSLIGAKMMNNTTDFLMPPLSPAELAAAFIGGAVTRGVLVGVATAVCIAPFVDMSVAHPWAVAYFGLSAALMMGVIGVMAGLWAEKFDHLAVVTNFIILPLAFLSGTFYSVEILPEPFYTISHINPVFFLIDGFRYGFIGAGDSHLGLGMAVTAGLNLVLITSCYLLLRSGWRLK 286          
BLAST of mRNA_P-wetherbeei_contig81.10.1 vs. uniprot
Match: A0A2E1EJW0_9HYPH (Transport permease protein n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E1EJW0_9HYPH)

HSP 1 Score: 310 bits (795), Expect = 2.600e-103
Identity = 157/265 (59.25%), Postives = 192/265 (72.45%), Query Frame = 1
Query:   22 TGIPPFGTARIHGVNWLGVWTLYVKEVRRFSNLYLQTILAPVVTTLLYFAIFALAIGSSRPAVHGVPFTVFLAPGLIMVAIIQNAFANTASSILGAKIQGNIVDLLMPPLSDSELAAAVIMGGVSRGIAVALANLIALSPFVSWQIPHPWAVVYFALMASICLSAGGLLAGIWSEKFDHMASVTNFVILPLSFLSGSFYSVALLPQAFQTINHFNPFFYLIDGMRYGFTGVSDSHIGVGMVVTALVAATLWITCYLVMKSGWRLK 816
            T  P  GT R   +NWLGVWTLYVKEVRRF  +  QT+ APVVTTLLY AIFALAIG  RP VHGVPF  FLAPGL+M+ +IQNAFANT+SSIL +KIQGNIVD+LMPPLS  EL   + M GV+RG+       +A+ PFV   I H WAVV++A+ AS+ L+  G+L GIWSEKFDH+ +VTNFVILPL+FLSG+FYSV  LP     +  +NP FYLIDG RYG TG +D  I  G+ +   V A LW  C+++ ++G+RLK
Sbjct:    4 TPYPQEGTRRFGAINWLGVWTLYVKEVRRFWKVMTQTVAAPVVTTLLYLAIFALAIGKFRPDVHGVPFIEFLAPGLVMMTMIQNAFANTSSSILISKIQGNIVDVLMPPLSAGELNVGIAMAGVTRGVVCGCVTAVAMLPFVHMGIAHLWAVVFYAVGASLMLALLGVLGGIWSEKFDHLQAVTNFVILPLTFLSGTFYSVTQLPDFAHELTKWNPVFYLIDGFRYGITGHADGSIATGIAIVLGVNAVLWTICHILFRTGYRLK 268          
BLAST of mRNA_P-wetherbeei_contig81.10.1 vs. uniprot
Match: A0A2D4VJE6_9HYPH (Transport permease protein n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VJE6_9HYPH)

HSP 1 Score: 309 bits (792), Expect = 6.470e-103
Identity = 154/262 (58.78%), Postives = 191/262 (72.90%), Query Frame = 1
Query:   31 PPFGTARIHGVNWLGVWTLYVKEVRRFSNLYLQTILAPVVTTLLYFAIFALAIGSSRPAVHGVPFTVFLAPGLIMVAIIQNAFANTASSILGAKIQGNIVDLLMPPLSDSELAAAVIMGGVSRGIAVALANLIALSPFVSWQIPHPWAVVYFALMASICLSAGGLLAGIWSEKFDHMASVTNFVILPLSFLSGSFYSVALLPQAFQTINHFNPFFYLIDGMRYGFTGVSDSHIGVGMVVTALVAATLWITCYLVMKSGWRLK 816
            P  G  R   VNWLGVWTLY+KEVRRF  +  QT+ APVVTTLLY AIFALAIG  RP VHGVPF  FLAPGLI++ +IQN+FANT+SSIL +K+QGNIVD+LMPPLS  EL   +   GV+RG+   LA  + + PF+  +I H WAVV+FA+ AS+ LS  G++ GIWSEKFDH+ +VTNF+ILP +FLSG+FYSV  LP     I  +NP FYLIDG RYG TG +D  I +G+ V   V A LW  C++++K G+RLK
Sbjct:    3 PMVGARRFGSVNWLGVWTLYMKEVRRFMKVITQTVAAPVVTTLLYLAIFALAIGKFRPDVHGVPFIEFLAPGLIIMTMIQNSFANTSSSILISKVQGNIVDILMPPLSPGELNVGIATAGVTRGVVCGLATALGMWPFIHLEIDHLWAVVFFAVGASLMLSLLGMMGGIWSEKFDHLQAVTNFLILPATFLSGTFYSVTQLPDFAYHITQYNPIFYLIDGFRYGMTGHADGSIEIGVAVVLAVNAILWAVCHMMLKRGYRLK 264          
BLAST of mRNA_P-wetherbeei_contig81.10.1 vs. uniprot
Match: A0A3T0E6W8_9PROT (Transport permease protein n=3 Tax=Maricaulaceae TaxID=2800061 RepID=A0A3T0E6W8_9PROT)

HSP 1 Score: 310 bits (793), Expect = 7.840e-103
Identity = 148/264 (56.06%), Postives = 199/264 (75.38%), Query Frame = 1
Query:   28 IPPFGTARIHG-VNWLGVWTLYVKEVRRFSNLYLQTILAPVVTTLLYFAIFALAIGSSRPAVHGVPFTVFLAPGLIMVAIIQNAFANTASSILGAKIQGNIVDLLMPPLSDSELAAAVIMGGVSRGIAVALANLIALSPFVSWQIPHPWAVVYFALMASICLSAGGLLAGIWSEKFDHMASVTNFVILPLSFLSGSFYSVALLPQAFQTINHFNPFFYLIDGMRYGFTGVSDSHIGVGMVVTALVAATLWITCYLVMKSGWRLK 816
            +PP    R+ G VNWLG+WTLY KEVRRF  +  QT+ APV TTLLY  +F+LAIG +R A  G PF VFL PGLIM+ ++ NAFAN++SS++ AK+QGN VD LMPPLS  ELAAA I G ++RG+ VA A+   + PF S  + H WA+ +F + A+  L   G++AG+W+EKFDH+A +TNF+I+PL+FLSG+FYS+++LP+ FQTI+HFNPFFYLIDG RYGF G +D +I +G+ VT ++ A L + CY V++SGWRL+
Sbjct:   19 VPP--QPRVMGAVNWLGLWTLYKKEVRRFLKVSFQTVAAPVATTLLYMMVFSLAIGVTREAPGGFPFVVFLGPGLIMMGLLNNAFANSSSSLIVAKVQGNTVDFLMPPLSAGELAAAFIGGAITRGVLVAAASAAVIIPFASLPVAHFWAIAFFGMGAAAMLGMAGVIAGVWAEKFDHLAVITNFIIMPLTFLSGTFYSISILPEPFQTISHFNPFFYLIDGFRYGFIGYADGNIAIGVAVTLVINAVLVVACYGVLRSGWRLR 280          
BLAST of mRNA_P-wetherbeei_contig81.10.1 vs. uniprot
Match: A0A199YPE4_9PROT (Transport permease protein n=17 Tax=Thalassospiraceae TaxID=2844866 RepID=A0A199YPE4_9PROT)

HSP 1 Score: 306 bits (785), Expect = 8.560e-102
Identity = 151/252 (59.92%), Postives = 194/252 (76.98%), Query Frame = 1
Query:   61 VNWLGVWTLYVKEVRRFSNLYLQTILAPVVTTLLYFAIFALAIGSSRPAVHGVPFTVFLAPGLIMVAIIQNAFANTASSILGAKIQGNIVDLLMPPLSDSELAAAVIMGGVSRGIAVALANLIALSPFVSWQIPHPWAVVYFALMASICLSAGGLLAGIWSEKFDHMASVTNFVILPLSFLSGSFYSVALLPQAFQTINHFNPFFYLIDGMRYGFTGVSDSHIGVGMVVTALVAATLWITCYLVMKSGWRLK 816
            VNWLG+WTLY KEVRRF N++LQTI APVVT+LL+ A+F LA+G +   V+G+PF  FLAPGLIM+ ++QNAFAN++SSI  AK+QGNIVD+LMPPLS  E+ A    G V+RG+ V L   I +S FV  QI + WA++YF + AS+ LS  G+  G+W+EKFDH+A VTNFV+ PLSFLSG+FYS   LP+A Q + HFNPFFY+IDG RYGFTG+SD  I  G+VV ALV A LW+ CY ++K+G++LK
Sbjct:   17 VNWLGLWTLYAKEVRRFLNVHLQTIGAPVVTSLLFLAVFLLALGRAVEMVNGIPFATFLAPGLIMMTMVQNAFANSSSSITIAKVQGNIVDVLMPPLSAGEMVAGFAFGAVTRGMIVGLVTAIFMSFFVDVQIHNIWAILYFGISASLMLSLLGIAGGVWAEKFDHIAVVTNFVVTPLSFLSGTFYSAESLPEAGQVLVHFNPFFYMIDGFRYGFTGISDGTIMTGVVVLALVNAALWLLCYRMIKTGYKLK 268          
BLAST of mRNA_P-wetherbeei_contig81.10.1 vs. uniprot
Match: A7HQ41_PARL1 (Transport permease protein n=2 Tax=Parvibaculum lavamentivorans TaxID=256618 RepID=A7HQ41_PARL1)

HSP 1 Score: 306 bits (785), Expect = 2.590e-101
Identity = 153/265 (57.74%), Postives = 191/265 (72.08%), Query Frame = 1
Query:   22 TGIPPFGTARIHGVNWLGVWTLYVKEVRRFSNLYLQTILAPVVTTLLYFAIFALAIGSSRPAVHGVPFTVFLAPGLIMVAIIQNAFANTASSILGAKIQGNIVDLLMPPLSDSELAAAVIMGGVSRGIAVALANLIALSPFVSWQIPHPWAVVYFALMASICLSAGGLLAGIWSEKFDHMASVTNFVILPLSFLSGSFYSVALLPQAFQTINHFNPFFYLIDGMRYGFTGVSDSHIGVGMVVTALVAATLWITCYLVMKSGWRLK 816
            T  P  G  R   VNWLGVWTLY+KEVRRF  +  QTI APV+TTLLY AIFALAIG  RP VHGVPF  FLAPGL+M+ +IQNAFANT+SSIL +KIQGNIVD+LMPPLS  EL   + M GV+RG+       IA+ PFV   I H WA++++A+ AS+ LS  G+L GIWSEKFDH+ +VTNFVILPL+FLSG+FYSV  LP     +  +NP FYLIDG RYG TG +D  +  G+ +   +   LW+ C+++ ++G+RLK
Sbjct:   37 TPYPEEGARRFGAVNWLGVWTLYLKEVRRFWKVMTQTIAAPVITTLLYLAIFALAIGKFRPDVHGVPFIEFLAPGLVMMTMIQNAFANTSSSILISKIQGNIVDVLMPPLSPGELNFGIAMAGVTRGLLCGAVTTIAMLPFVHMGIEHAWAIIFYAVGASLMLSLLGMLGGIWSEKFDHLQAVTNFVILPLTFLSGTFYSVTQLPDLAHEVTKWNPVFYLIDGFRYGVTGHADGSLATGVALVLGINLALWVICHMLFRTGYRLK 301          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig81.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TXV9_9PROT8.250e-14176.72Transport permease protein n=1 Tax=Alphaproteobact... [more]
A0A351T1P0_9PROT8.600e-12266.54Transport permease protein n=6 Tax=Alphaproteobact... [more]
A0A550K205_9PROT4.250e-10860.00Transport permease protein n=1 Tax=Glycocaulis pro... [more]
A0A6N6VNG5_9HYPH2.570e-10459.54Transport permease protein n=1 Tax=Parvibaculum se... [more]
UPI001EDCDD338.310e-10457.54ABC transporter permease n=1 Tax=Shewanella sp. ER... [more]
A0A2E1EJW0_9HYPH2.600e-10359.25Transport permease protein n=4 Tax=Hyphomicrobiale... [more]
A0A2D4VJE6_9HYPH6.470e-10358.78Transport permease protein n=2 Tax=Parvibaculum Ta... [more]
A0A3T0E6W8_9PROT7.840e-10356.06Transport permease protein n=3 Tax=Maricaulaceae T... [more]
A0A199YPE4_9PROT8.560e-10259.92Transport permease protein n=17 Tax=Thalassospirac... [more]
A7HQ41_PARL12.590e-10157.74Transport permease protein n=2 Tax=Parvibaculum la... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig81contigP-wetherbeei_contig81:12565..13386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1479238.JQMZ01000001_gene823
Preferred nameyadH
PFAMsABC2_membrane
Model size822
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K01992
KEGG TC3.A.1
KEGG ModuleM00254
Hectar predicted targeting categorysignal anchor
Exons1
Evalue5.08e-108
EggNOG OGsCOG0842@1|root,COG0842@2|Bacteria,1MUH1@1224|Proteobacteria,2TQSY@28211|Alphaproteobacteria,43WIB@69657|Hyphomonadaceae
DescriptionTransport permease protein
Cds size822
COG categoryV
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187020.345158-CDS-P-wetherbeei_contig81:12564..133861683187020.345158-CDS-P-wetherbeei_contig81:12564..13386Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig81 12565..13386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig81.10.1prot_P-wetherbeei_contig81.10.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig81 12565..13386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig81.10.1

>prot_P-wetherbeei_contig81.10.1 ID=prot_P-wetherbeei_contig81.10.1|Name=mRNA_P-wetherbeei_contig81.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=274bp
MLQSPDPTGIPPFGTARIHGVNWLGVWTLYVKEVRRFSNLYLQTILAPVV
TTLLYFAIFALAIGSSRPAVHGVPFTVFLAPGLIMVAIIQNAFANTASSI
LGAKIQGNIVDLLMPPLSDSELAAAVIMGGVSRGIAVALANLIALSPFVS
WQIPHPWAVVYFALMASICLSAGGLLAGIWSEKFDHMASVTNFVILPLSF
LSGSFYSVALLPQAFQTINHFNPFFYLIDGMRYGFTGVSDSHIGVGMVVT
ALVAATLWITCYLVMKSGWRLKP*
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mRNA from alignment at P-wetherbeei_contig81:12565..13386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig81.10.1 ID=mRNA_P-wetherbeei_contig81.10.1|Name=mRNA_P-wetherbeei_contig81.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig81:12565..13386+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCAATCCCCTGATCCCACCGGAATTCCCCCCTTTGGCACCGCGCG CATTCACGGTGTGAATTGGCTGGGGGTATGGACTCTGTATGTGAAAGAGG TCCGGCGTTTTTCGAACCTGTATCTGCAAACCATCCTGGCGCCGGTTGTG ACGACGCTGCTGTATTTTGCGATCTTTGCGCTGGCCATTGGCAGCAGCCG TCCTGCGGTGCATGGCGTCCCATTTACGGTTTTTCTGGCGCCTGGGCTGA TCATGGTGGCGATTATCCAGAATGCGTTCGCCAATACGGCTTCCTCTATA TTGGGAGCAAAAATTCAGGGCAATATTGTCGATCTTCTGATGCCGCCGCT TTCGGATAGCGAGCTTGCCGCTGCTGTCATTATGGGCGGTGTAAGCCGTG GCATTGCTGTGGCCCTGGCGAATCTGATTGCGCTTTCGCCATTTGTGTCA TGGCAAATACCGCATCCCTGGGCGGTGGTGTATTTTGCGCTGATGGCGTC CATCTGCCTGTCTGCGGGCGGCCTGCTGGCCGGGATATGGTCCGAGAAAT TTGACCATATGGCCTCGGTGACGAATTTTGTCATTCTGCCTTTGTCGTTC CTGTCCGGCAGTTTCTATTCAGTTGCCCTGCTGCCGCAGGCATTCCAGAC CATCAACCACTTCAATCCTTTCTTCTATCTGATTGACGGCATGCGCTATG GCTTTACCGGCGTTTCCGATAGCCATATCGGTGTTGGCATGGTGGTTACG GCCCTGGTTGCGGCAACGTTATGGATCACCTGCTATCTGGTGATGAAATC CGGCTGGCGATTGAAACCCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig81:12565..13386+

>mRNA_P-wetherbeei_contig81.10.1 ID=mRNA_P-wetherbeei_contig81.10.1|Name=mRNA_P-wetherbeei_contig81.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig81:12565..13386+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCAATCCCCTGATCCCACCGGAATTCCCCCCTTTGGCACCGCGCG
CATTCACGGTGTGAATTGGCTGGGGGTATGGACTCTGTATGTGAAAGAGG
TCCGGCGTTTTTCGAACCTGTATCTGCAAACCATCCTGGCGCCGGTTGTG
ACGACGCTGCTGTATTTTGCGATCTTTGCGCTGGCCATTGGCAGCAGCCG
TCCTGCGGTGCATGGCGTCCCATTTACGGTTTTTCTGGCGCCTGGGCTGA
TCATGGTGGCGATTATCCAGAATGCGTTCGCCAATACGGCTTCCTCTATA
TTGGGAGCAAAAATTCAGGGCAATATTGTCGATCTTCTGATGCCGCCGCT
TTCGGATAGCGAGCTTGCCGCTGCTGTCATTATGGGCGGTGTAAGCCGTG
GCATTGCTGTGGCCCTGGCGAATCTGATTGCGCTTTCGCCATTTGTGTCA
TGGCAAATACCGCATCCCTGGGCGGTGGTGTATTTTGCGCTGATGGCGTC
CATCTGCCTGTCTGCGGGCGGCCTGCTGGCCGGGATATGGTCCGAGAAAT
TTGACCATATGGCCTCGGTGACGAATTTTGTCATTCTGCCTTTGTCGTTC
CTGTCCGGCAGTTTCTATTCAGTTGCCCTGCTGCCGCAGGCATTCCAGAC
CATCAACCACTTCAATCCTTTCTTCTATCTGATTGACGGCATGCGCTATG
GCTTTACCGGCGTTTCCGATAGCCATATCGGTGTTGGCATGGTGGTTACG
GCCCTGGTTGCGGCAACGTTATGGATCACCTGCTATCTGGTGATGAAATC
CGGCTGGCGATTGAAACCCTAG
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