mRNA_P-wetherbeei_contig8096.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8096.1.1
Unique NamemRNA_P-wetherbeei_contig8096.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8096.1.1 vs. uniprot
Match: D7FXS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS4_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 7.800e-55
Identity = 102/155 (65.81%), Postives = 127/155 (81.94%), Query Frame = 1 
Query:    1 EEWLNAVLAAVCVGCAALAAGLTMGLLSLEPLEMAIKLRSGSEIEQRQAAKLLPLITRHHLLLATLLMFNSLATEARQAFALPIFLDNLMPAYVAVILSVTLVLFFGEILPSAFFTGPNQLAMASALSPVVVALMVIMSPIAWPIAWCLDRVLGV 465
              W+N  + +VCV CA LAAGLTMGLLS+EPLEMAIK RSG+  EQ+QA+++LPL++RHH LL TLL+FNSLA EA     LPIFL NL+P+++AVILSV+LVLFFGEI PSA FTG NQLA+AS +S +V  LM+++ P+AWPIAW LDRVLG+
Sbjct:  205 STWVNIAMTSVCVVCAGLAAGLTMGLLSIEPLEMAIKQRSGTPEEQQQASRILPLVSRHHFLLVTLLLFNSLANEA-----LPIFLGNLVPSWLAVILSVSLVLFFGEIFPSAVFTGKNQLAIASGMSWLVYTLMMVLGPVAWPIAWMLDRVLGI 354
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BLAST of mRNA_P-wetherbeei_contig8096.1.1 vs. uniprot
Match: A0A6H5KPI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPI7_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 2.340e-54
Identity = 103/155 (66.45%), Postives = 126/155 (81.29%), Query Frame = 1 
Query:    1 EEWLNAVLAAVCVGCAALAAGLTMGLLSLEPLEMAIKLRSGSEIEQRQAAKLLPLITRHHLLLATLLMFNSLATEARQAFALPIFLDNLMPAYVAVILSVTLVLFFGEILPSAFFTGPNQLAMASALSPVVVALMVIMSPIAWPIAWCLDRVLGV 465
              W+N  + +VCV CA LAAGLTMGLLS+EPLEMAIK RSG+  EQ QA+++LPL++RHH LL TLL+FNSLA EA     LPIFL NL+P+++AVILSVTLVLFFGEI PSA FTG NQLA+AS +S +V  LM+++ P+AWPIAW LDRVLG+
Sbjct:  202 STWVNIAMTSVCVVCAGLAAGLTMGLLSIEPLEMAIKQRSGTPEEQHQASRILPLVSRHHFLLVTLLLFNSLANEA-----LPIFLGNLVPSWLAVILSVTLVLFFGEIFPSAVFTGKNQLAIASGMSWLVYTLMMVLGPVAWPIAWMLDRVLGI 351
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BLAST of mRNA_P-wetherbeei_contig8096.1.1 vs. uniprot
Match: A0A835ZJ67_9STRA (CNNM transmembrane domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ67_9STRA)

HSP 1 Score: 182 bits (461), Expect = 3.460e-50
Identity = 106/161 (65.84%), Postives = 125/161 (77.64%), Query Frame = 1 
Query:   13 NAVLAAVCVGCAALAAGLTMGLLSLEPLEMAIKLRSGSEIEQRQAAKLLPLITRHHLLLATLLMFNSLATEARQ-----------AFALPIFLDNLMPAYVAVILSVTLVLFFGEILPSAFFTGPNQLAMASALSPVVVALMVIMSPIAWPIAWCLDRVLG 462
            N +   V + CA LAAGLT GLLS+EPLEMAIK RSG+  E+RQA ++LP+I+RHHLLL TLL+FNSLA EA Q           A ALPIFLDNL+PAY AVI+SVTLVLFFGEILP+AFFTGP+QL +AS+L+ VV ALM + SP+AWPIA  LD VLG
Sbjct:  200 NLICILVLITCAGLAAGLTTGLLSIEPLEMAIKQRSGTVDEKRQARRILPIISRHHLLLVTLLLFNSLANEATQGGGTTSISLLCACALPIFLDNLLPAYQAVIMSVTLVLFFGEILPTAFFTGPDQLRIASSLTWVVWALMAVFSPVAWPIAKALDLVLG 360
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BLAST of mRNA_P-wetherbeei_contig8096.1.1 vs. uniprot
Match: A0A7S1DDQ1_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDQ1_CYCTE)

HSP 1 Score: 154 bits (388), Expect = 1.020e-44
Identity = 90/139 (64.75%), Postives = 113/139 (81.29%), Query Frame = 1 
Query:   13 NAVLAAVCVGCAALAAGLTMGLLSLEPLEMAIKLRSGS-EIEQRQAAKLLPLITRHHLLLATLLMFNSLATEARQAFALPIFLDNLMPAYVAVILSVTLVLFFGEILPSAFFTGPNQLAMASALSPVVVALMVIMSPIA 426
            N +LAA CV  AALAAGLTMGLLSL+PL + IK+R+G+ + E++QA KLL L+ +HHLLL TLL+ NS+A EA     LP+FLD ++P+YVAVILSVTLVLFFGEI+PSA FTGPNQ+ +AS LSPVV A+M ++ PIA
Sbjct:   38 NGLLAAACVALAALAAGLTMGLLSLDPLMLRIKMRAGATDTEKKQAEKLLGLVQQHHLLLVTLLLMNSMANEA-----LPLFLDKIVPSYVAVILSVTLVLFFGEIIPSAVFTGPNQMKIASMLSPVVQAVMCLLFPIA 171
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BLAST of mRNA_P-wetherbeei_contig8096.1.1 vs. uniprot
Match: A0A7S2XU79_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XU79_9STRA)

HSP 1 Score: 152 bits (384), Expect = 6.870e-44
Identity = 91/157 (57.96%), Postives = 118/157 (75.16%), Query Frame = 1 
Query:   13 NAVLAAVCVGCAALAAGLTMGLLSLEPLEMAIKLRSGSEIEQRQAAK-LLPLITRHHLLLATLLMFNSLATEARQAFALPIFLDNLMPAYVAVILSVTLVLFFGEILPSAFFTGPNQLAMASALSPVVVALMVIMSPIAWPIAWCLDRVLGVGEWPD 480
            + +LA VCV  AALAAGLTMGLLSL+P+ + IK+R+G+  E+R  AK LLPL+ +HH LL TLL+ NS+A EA     LP+FLD L+P+Y+AVILSVTLVLFFGEI+PSA FTGP Q+ +AS L P+V   M+++ PIA+PIA  LD +L   +  D
Sbjct:   33 DGMLAGVCVVVAALAAGLTMGLLSLDPMLLLIKIRAGATEEERNQAKALLPLVQQHHRLLVTLLLLNSMANEA-----LPLFLDALVPSYMAVILSVTLVLFFGEIIPSALFTGPRQIQIASRLVPLVKVTMMLLYPIAYPIAKALDLILHDDDNDD 184
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BLAST of mRNA_P-wetherbeei_contig8096.1.1 vs. uniprot
Match: A0A7S3XXY8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXY8_HETAK)

HSP 1 Score: 152 bits (383), Expect = 2.940e-43
Identity = 84/147 (57.14%), Postives = 111/147 (75.51%), Query Frame = 1 
Query:   22 LAAVCVGCAALAAGLTMGLLSLEPLEMAIKLRSGSEIEQRQAAKLLPLITRHHLLLATLLMFNSLATEARQAFALPIFLDNLMPAYVAVILSVTLVLFFGEILPSAFFTGPNQLAMASALSPVVVALMVIMSPIAWPIAWCLDRVLG 462
            LA VCV CAA AAGLT+GL+S++PL++ +K+ +GS  E+ QA+++LPL+   H LL TLL+FNSLA EA     LPIFLD L+P +VAV+LSV+L+L FGEILPSA FTGP QL++ S    +V  LM +  P+AWP+ W LDRV+G
Sbjct:    3 LALVCVCCAATAAGLTLGLMSMDPLDLQLKISAGSAAEKNQASRILPLLNNPHQLLCTLLLFNSLANEA-----LPIFLDELVPEWVAVLLSVSLLLIFGEILPSAIFTGPRQLSVVSNCIWLVRVLMGVFLPLAWPLGWVLDRVVG 144
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BLAST of mRNA_P-wetherbeei_contig8096.1.1 vs. uniprot
Match: W7TII6_9STRA (CNNM transmembrane domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TII6_9STRA)

HSP 1 Score: 161 bits (407), Expect = 8.680e-43
Identity = 91/154 (59.09%), Postives = 112/154 (72.73%), Query Frame = 1 
Query:    1 EEWLNAVLAAVCVGCAALAAGLTMGLLSLEPLEMAIKLRSGSEIEQRQAAKLLPLITRHHLLLATLLMFNSLATEARQAFALPIFLDNLMPAYVAVILSVTLVLFFGEILPSAFFTGPNQLAMASALSPVVVALMVIMSPIAWPIAWCLDRVLG 462
              W++  LA  CV  AA+A+GLT+GL+S+EPLE+ IK R G+  E+ QA +LLPL+ R HLLL TLL+FN+ A EA     LP+FLD L+P Y+AVILSVT VLFFGEI PSA F GPNQL + S ++PVV  L+    PIA PIAWCLDR LG
Sbjct:  217 SSWIHLGLAFACVMAAAIASGLTIGLMSIEPLELEIKERIGTVEERSQAHRLLPLLNRRHLLLVTLLLFNAAAAEA-----LPLFLDALVPGYIAVILSVTAVLFFGEIFPSAIFMGPNQLKLGSRMTPVVWCLICFFFPIACPIAWCLDRFLG 365
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BLAST of mRNA_P-wetherbeei_contig8096.1.1 vs. uniprot
Match: A0A4D9CY62_9STRA (Uncharacterized protein ycf23 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY62_9STRA)

HSP 1 Score: 158 bits (400), Expect = 7.700e-42
Identity = 86/154 (55.84%), Postives = 118/154 (76.62%), Query Frame = 1 
Query:    1 EEWLNAVLAAVCVGCAALAAGLTMGLLSLEPLEMAIKLRSGSEIEQRQAAKLLPLITRHHLLLATLLMFNSLATEARQAFALPIFLDNLMPAYVAVILSVTLVLFFGEILPSAFFTGPNQLAMASALSPVVVALMVIMSPIAWPIAWCLDRVLG 462
            ++ LN   + +CV CAA+AAGLT+GL+S++PLE+ IK R G+  E RQA+ +LPLI RHH LL TLL++NS A E      LP+FLD L+P+YVAV+LSVT+VL FGEILPSA F+GPNQL +A+ ++  V  LM+++SPI++P++W LDR  G
Sbjct:  187 DDVLNLTFSFICVLCAAIAAGLTIGLMSIDPLELEIKQRVGTAEECRQASVVLPLIQRHHYLLVTLLLYNSAANET-----LPLFLDRLVPSYVAVLLSVTMVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDRFFG 335
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BLAST of mRNA_P-wetherbeei_contig8096.1.1 vs. uniprot
Match: A0A4D9CSI6_9STRA (CNNM transmembrane domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSI6_9STRA)

HSP 1 Score: 152 bits (385), Expect = 6.360e-40
Identity = 86/157 (54.78%), Postives = 115/157 (73.25%), Query Frame = 1 
Query:    1 EEWLNAVLAAVCVGCAALAAGLTMGLLSLEPLEMAIKLRSGSEIEQRQAAKLLPLITRHHLLLATLLMFNSLATEARQAFALPIFLDNLMPAYVAVILSVTLVLFFGEILPSAFFTGPNQLAMASALSPVVVALMVIMSPIAWPIAWCLDRVLGVGE 471
            ++++N  LA +CV  AALA+GLT+GLLS++ L++ IK R+G+  ++  AA +LPL+   HLLL TLL+FNS+A EA     LP+ L  L+P Y+AVILSVT VLFFGEILPSA F GPNQL + S ++PVV  L+ +  PIAWPI+  LD+VLG G 
Sbjct:   84 KDFVNLGLALICVLFAALASGLTIGLLSIDTLDLEIKQRAGTPTDKHHAASILPLLAHRHLLLVTLLLFNSMAAEA-----LPLALGELVPGYIAVILSVTAVLFFGEILPSAVFLGPNQLKLGSRMTPVVWGLIFLFFPIAWPISLALDKVLGGGS 235
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BLAST of mRNA_P-wetherbeei_contig8096.1.1 vs. uniprot
Match: F0YEA8_AURAN (CNNM transmembrane domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEA8_AURAN)

HSP 1 Score: 145 bits (365), Expect = 1.490e-39
Identity = 80/152 (52.63%), Postives = 115/152 (75.66%), Query Frame = 1 
Query:   10 LNAVLAAVCVGCAALAAGLTMGLLSLEPLEMAIKLRSGSEIEQRQAAKLLPLITR--HHLLLATLLMFNSLATEARQAFALPIFLDNLMPAYVAVILSVTLVLFFGEILPSAFFTGPNQLAMASALSPVVVALMVIMSPIAWPIAWCLDRVL 459
            L+  L A C+ CAALAAGLTMG++SL+PL++ +K+R+G++ EQ  AA+LLPL+ R  HH +L TLL+ NS A EA     LP+FLD L+P++ A+++SVT VL FGEI PSA FTGPN+L +A+A +P+V   +V+++P+A+P+A  LD  L
Sbjct:   11 LDLALTATCIICAALAAGLTMGVVSLDPLDLRVKMRTGTKSEQACAARLLPLVDRRPHHQVLVTLLLLNSCANEA-----LPLFLDKLVPSWAAIVISVTAVLVFGEIAPSALFTGPNKLQIAAAFAPLVHCFLVVLAPLAYPMALALDAAL 157
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8096.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXS4_ECTSI7.800e-5565.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPI7_9PHAE2.340e-5466.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZJ67_9STRA3.460e-5065.84CNNM transmembrane domain-containing protein n=1 T... [more]
A0A7S1DDQ1_CYCTE1.020e-4464.75Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S2XU79_9STRA6.870e-4457.96Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S3XXY8_HETAK2.940e-4357.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TII6_9STRA8.680e-4359.09CNNM transmembrane domain-containing protein n=4 T... [more]
A0A4D9CY62_9STRA7.700e-4255.84Uncharacterized protein ycf23 n=1 Tax=Nannochlorop... [more]
A0A4D9CSI6_9STRA6.360e-4054.78CNNM transmembrane domain-containing protein n=1 T... [more]
F0YEA8_AURAN1.490e-3952.63CNNM transmembrane domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8096contigP-wetherbeei_contig8096:618..1413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FXS4
PFAMsCBS,DUF21,Snf7
Model size492
Max annot lvl2759|Eukaryota
KEGG koko:K16302
KEGG TC9.A.40.3
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1.28e-55
EggNOG OGsCOG1253@1|root,KOG2118@2759|Eukaryota
Descriptionmagnesium ion homeostasis
Cds size492
COG categoryE
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187019.7847507-CDS-P-wetherbeei_contig8096:617..8691683187019.7847507-CDS-P-wetherbeei_contig8096:617..869Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8096 618..869 -
1683187019.7995648-CDS-P-wetherbeei_contig8096:1173..14131683187019.7995648-CDS-P-wetherbeei_contig8096:1173..1413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8096 1174..1413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8096.1.1prot_P-wetherbeei_contig8096.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8096 618..1413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8096.1.1

>prot_P-wetherbeei_contig8096.1.1 ID=prot_P-wetherbeei_contig8096.1.1|Name=mRNA_P-wetherbeei_contig8096.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
EEWLNAVLAAVCVGCAALAAGLTMGLLSLEPLEMAIKLRSGSEIEQRQAA
KLLPLITRHHLLLATLLMFNSLATEARQAFALPIFLDNLMPAYVAVILSV
TLVLFFGEILPSAFFTGPNQLAMASALSPVVVALMVIMSPIAWPIAWCLD
RVLGVGEWPDLPI*
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mRNA from alignment at P-wetherbeei_contig8096:618..1413-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8096.1.1 ID=mRNA_P-wetherbeei_contig8096.1.1|Name=mRNA_P-wetherbeei_contig8096.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=796bp|location=Sequence derived from alignment at P-wetherbeei_contig8096:618..1413- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGTGGCTTAACGCCGTGCTAGCGGCGGTGTGCGTGGGCTGCGCTGC
TCTCGCTGCGGGGCTGACGATGGGGCTCTTGTCGCTCGAGCCCTTAGAAA
TGGCTATCAAGCTGCGCAGCGGCAGCGAAATCGAGCAGCGGCAGGCGGCG
AAGCTGCTGCCACTGATTACGCGCCATCACTTGCTGCTCGCCACCCTCTT
GATGTTCAACAGCCTCGCCACTGAGGCACGCCAGGCTTTCGTCCTTTTTA
AACTCATTCGCCCAATTTTGTCTTCCGACTGCTTGTTGACTTCAATGAAC
ATGTTCCGCATGACTGCTGAAAAATTCTATTTATAACAATGGCTTTTCCT
CATTAAACTGGCAGCTTTCCTGTCAGTTCCTCCTCTGGTTGCATTCTATC
CCCTTTTGTACCTGCGTTCCAACGTGAGCAACATCTTATCACCAATTCGC
CCCACAAAGTACAAAGTCGCATTCACAAACATATGGGACAAATCACATGT
AATGACCAACAAAACCACTCGGTTACGTTCCGCGAACCAAACAGGCGCTG
CCCATCTTCCTCGACAACCTGATGCCGGCCTATGTTGCCGTCATTCTATC
CGTCACGCTGGTGCTCTTCTTCGGCGAGATTCTGCCGTCCGCCTTCTTCA
CGGGGCCCAACCAACTGGCTATGGCGTCGGCGCTGTCGCCCGTCGTCGTC
GCACTGATGGTCATCATGTCCCCCATCGCGTGGCCCATCGCCTGGTGCCT
AGATCGCGTTCTCGGCGTCGGTGAGTGGCCGGACCTGCCCATTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8096:618..1413-

>mRNA_P-wetherbeei_contig8096.1.1 ID=mRNA_P-wetherbeei_contig8096.1.1|Name=mRNA_P-wetherbeei_contig8096.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig8096:618..1413- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGTGGCTTAACGCCGTGCTAGCGGCGGTGTGCGTGGGCTGCGCTGC
TCTCGCTGCGGGGCTGACGATGGGGCTCTTGTCGCTCGAGCCCTTAGAAA
TGGCTATCAAGCTGCGCAGCGGCAGCGAAATCGAGCAGCGGCAGGCGGCG
AAGCTGCTGCCACTGATTACGCGCCATCACTTGCTGCTCGCCACCCTCTT
GATGTTCAACAGCCTCGCCACTGAGGCACGCCAGGCTTTCGCGCTGCCCA
TCTTCCTCGACAACCTGATGCCGGCCTATGTTGCCGTCATTCTATCCGTC
ACGCTGGTGCTCTTCTTCGGCGAGATTCTGCCGTCCGCCTTCTTCACGGG
GCCCAACCAACTGGCTATGGCGTCGGCGCTGTCGCCCGTCGTCGTCGCAC
TGATGGTCATCATGTCCCCCATCGCGTGGCCCATCGCCTGGTGCCTAGAT
CGCGTTCTCGGCGTCGGTGAGTGGCCGGACCTGCCCATTTGA
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