mRNA_P-wetherbeei_contig8093.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8093.2.1
Unique NamemRNA_P-wetherbeei_contig8093.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8093.2.1 vs. uniprot
Match: K8YZ78_NANGC (Mitochondrial import inner membrane translocase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZ78_NANGC)

HSP 1 Score: 71.6 bits (174), Expect = 1.340e-13
Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 MSWWGRGKKEEPPEDGGF---LQESPFGDAGGSDFVAPSS-GGGXXXXXXXXXXXXXXXXXLQEQQKVIFQQVITKLTEISFD-CVDRPGTSLSSREQQCIVSSVNKYLATSQFVVGRLNK 348
            MSW+G G K+E  ++  +      S F ++GG      SS G  XXXXXXXXXXX      + EQQK + Q VI +LTE++F+ C+ +P +SLSS EQ CI ++V KYL TS+FV+GR+ +
Sbjct:    1 MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGXXXXXXXXXXXXXQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQR 121          
BLAST of mRNA_P-wetherbeei_contig8093.2.1 vs. uniprot
Match: W7TJX5_9STRA (Mitochondrial protein translocase family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJX5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.780e-11
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  172 LQEQQKVIFQQVITKLTEISFD-CVDRPGTSLSSREQQCIVSSVNKYLATSQFVVGRLNK 348
            + EQQK + Q VI +LTE++F+ C+ +P +SLSS EQ CI ++V KYL TS+FV+GR+ +
Sbjct:   98 MAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQR 157          
BLAST of mRNA_P-wetherbeei_contig8093.2.1 vs. uniprot
Match: A0A8J2T0W3_9STRA (Mitochondrial import inner membrane translocase subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0W3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.260e-10
Identity = 46/125 (36.80%), Postives = 63/125 (50.40%), Query Frame = 1
Query:    7 WWGRGKKEEPPEDGGFLQESPFGDAGGSDFVAPSSGG---------GXXXXXXXXXXXXXXXXXLQEQQKVIFQQVITKLTEISFD-CVDR-PGTSLSSREQQCIVSSVNKYLATSQFVVGRLNK 348
            ++G GKK    +DGG   E      GG +F     GG         G                 + EQQ+ + QQVI KLTE+SFD C+ + P ++LS+ E+ CI + V KYL TS+FV+GR  K
Sbjct:    7 FFGGGKKSN--DDGGMGPEKTDLAVGGENFGGGDFGGPGSMAAPRVGGAPPGQAATQAELQRAVVAEQQRALVQQVIAKLTEVSFDTCLQKKPDSTLSAGERACIHTVVGKYLDTSEFVLGRSTK 129          
BLAST of mRNA_P-wetherbeei_contig8093.2.1 vs. uniprot
Match: A0A484EEJ0_BRELC (Mitochondrial import inner membrane translocase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEJ0_BRELC)

HSP 1 Score: 60.5 bits (145), Expect = 2.570e-9
Identity = 56/123 (45.53%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    1 MSWWGRGKKEEPPEDGG---FLQESPFGD--AGGSDFVAPSSGGGXXXXXXXXXXXXXXXXXLQEQQKVIFQQVITKLTEISFD--CVDRPGTSLSSREQQCIVSSVNKYLATSQFVVGRLNK 348
            MS++G GKKE  P       F+ E P  D  A  S   APS    XXXXXXXXXXXX     ++EQQ+ + QQ I+K+T +++D     +P + LSS+E+ CI +    YL TS FVV RLNK
Sbjct:    1 MSFFGFGKKEPEPSTSSSDSFVYEEPTYDYSAPASFDSAPSXXXXXXXXXXXXXXXXMQQMIMEEQQRALIQQAISKITVLAWDKCSASKPDSELSSKEKDCIKNVTLAYLDTSMFVVHRLNK 123          
BLAST of mRNA_P-wetherbeei_contig8093.2.1 vs. uniprot
Match: A0A7S0GC03_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GC03_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.630e-9
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  181 QQKVIFQQVITKLTEISFD-CVD-RPGTSLSSREQQCIVSSVNKYLATSQFVVGRLNK 348
            QQ++I +QV+TKLTE SF+ C+  +P  SLS RE  CI ++V K+L TS+F+ GR+ K
Sbjct:   60 QQQMIVEQVVTKLTEASFEKCIQGKPSESLSGRESACIYATVGKWLDTSEFMRGRMEK 117          
BLAST of mRNA_P-wetherbeei_contig8093.2.1 vs. uniprot
Match: A0A6G0X2Q9_9STRA (Mitochondrial import inner membrane translocase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2Q9_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.930e-9
Identity = 46/122 (37.70%), Postives = 61/122 (50.00%), Query Frame = 1
Query:    1 MSWWG-RGKKEEPPEDGGFLQESPFG--DAGGSDFVAP--SSGGGXXXXXXXXXXXXXXXXXLQEQQKVIFQQVITKLTEISFD--CVDRPGTSLSSREQQCIVSSVNKYLATSQFVVGRLN 345
            MSW+G  GKKEE P       ES F   DA  S    P  SS GG                 ++EQQKV+ QQ I K+T I+++     +P TSLS+ E  CI +    YL +S F+V +L+
Sbjct:    1 MSWFGFGGKKEEEPAPISSFSESSFSEIDASSSPSYTPAISSSGGTSVNDII----------MEEQQKVLIQQAIAKITAIAWEKCSASKPDTSLSASEISCIQNVTTSYLDSSVFIVRKLS 112          
BLAST of mRNA_P-wetherbeei_contig8093.2.1 vs. uniprot
Match: A0A482SEV0_9ARCH (Tim10/DDP family zinc finger protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEV0_9ARCH)

HSP 1 Score: 61.2 bits (147), Expect = 5.320e-9
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1
Query:  181 QQKVIFQQVITKLTEISFD-CVDRPGTSLSSREQQCIVSSVNKYLATSQFVVGRL 342
            QQ++IFQQV+ KLT++SF+ CV +PGTSLS  EQ CI ++V K++  SQ ++ R+
Sbjct:  147 QQQMIFQQVMIKLTDLSFERCVTKPGTSLSYSEQTCIQATVGKFVDCSQLILQRV 201          
BLAST of mRNA_P-wetherbeei_contig8093.2.1 vs. uniprot
Match: A0A2D4C4H2_PYTIN (Mitochondrial import inner membrane translocase subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4H2_PYTIN)

HSP 1 Score: 58.5 bits (140), Expect = 1.280e-8
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  172 LQEQQKVIFQQVITKLTEISFD--CVDRPGTSLSSREQQCIVSSVNKYLATSQFVVGRLNK 348
            ++EQQ+ + QQ I+K+T I++D     +P + LSSRE++CI +    YL TS FVV RLNK
Sbjct:   58 MEEQQRALIQQAISKITAIAWDKCSASKPDSELSSRERECIKNVTLAYLDTSMFVVHRLNK 118          
BLAST of mRNA_P-wetherbeei_contig8093.2.1 vs. uniprot
Match: A0A225WXI6_9STRA (Mitochondrial import inner membrane translocase subunit n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WXI6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.150e-8
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   88 SDFVAPSSGGGXXXXXXXXXXXXXXXXXLQEQQKVIFQQVITKLTEISFD--CVDRPGTSLSSREQQCIVSSVNKYLATSQFVVGRLNK 348
            S F APSS       XXXXXX       ++EQQ+V+ QQ ++K+T +++D     +P + LSS+E+ CI +    YL TS FVV R+NK
Sbjct:   37 SSFDAPSSAPSSALGXXXXXXAEMQQLIVEEQQRVLIQQAVSKITALAWDKCSASKPDSELSSKERDCIKNVTLAYLDTSMFVVHRINK 125          
BLAST of mRNA_P-wetherbeei_contig8093.2.1 vs. uniprot
Match: A0A7S1UNE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNE0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.850e-7
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = 1
Query:    1 MSWWGRGKKE-EPPEDGGFLQESPFGDAGGSDFVAPSSGGGXXXXXXXXXXXXXXXXXLQEQQKVIFQQVITKLTEISF-DCVD-RPGTSLSSREQQCIVSSVNKYLATSQFVVGRLNK 348
            MS+WG  KK   PP +  F       + G     APSS                    L  +Q+++ Q VIT L++ +F  C+  +P  SLS +E  CI ++VNK++ T++F++GRL K
Sbjct:    7 MSFWGSSKKPPSPPTETSFSSGDESYNVGTDFSAAPSSA-------PTSGLADMQQFSLALRQQIMVQTVITDLSDTAFAQCITGKPSDSLSGKESACIHATVNKWMDTNEFMMGRLAK 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8093.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
K8YZ78_NANGC1.340e-1346.28Mitochondrial import inner membrane translocase su... [more]
W7TJX5_9STRA1.780e-1151.67Mitochondrial protein translocase family n=1 Tax=N... [more]
A0A8J2T0W3_9STRA8.260e-1036.80Mitochondrial import inner membrane translocase su... [more]
A0A484EEJ0_BRELC2.570e-945.53Mitochondrial import inner membrane translocase su... [more]
A0A7S0GC03_9STRA3.630e-951.72Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6G0X2Q9_9STRA3.930e-937.70Mitochondrial import inner membrane translocase su... [more]
A0A482SEV0_9ARCH5.320e-952.73Tim10/DDP family zinc finger protein n=1 Tax=archa... [more]
A0A2D4C4H2_PYTIN1.280e-847.54Mitochondrial import inner membrane translocase su... [more]
A0A225WXI6_9STRA4.150e-842.70Mitochondrial import inner membrane translocase su... [more]
A0A7S1UNE0_9STRA2.850e-732.77Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8093contigP-wetherbeei_contig8093:1313..1764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHL9
Preferred nameTIMM8B
PFAMszf-Tim10_DDP
Model size351
Max annot lvl2759|Eukaryota
KEGG koko:K01209,ko:K17780
KEGG TC3.A.8.1
KEGG ReactionR01762
KEGG Pathwayko00520,map00520
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008324,GO:0008565,GO:0009987,GO:0015031,GO:0015075,GO:0015318,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034220,GO:0034613,GO:0042719,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046873,GO:0046907,GO:0046914,GO:0050877,GO:0050954,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098655,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
Exons2
Evalue8.27e-13
EggNOG OGsKOG3489@1|root,KOG3489@2759|Eukaryota
EC3.2.1.55
Descriptionprotein transport
Cds size351
COG categoryO
CAZyGH51
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187019.736639-CDS-P-wetherbeei_contig8093:1312..14741683187019.736639-CDS-P-wetherbeei_contig8093:1312..1474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8093 1313..1474 +
1683187019.7495039-CDS-P-wetherbeei_contig8093:1575..17641683187019.7495039-CDS-P-wetherbeei_contig8093:1575..1764Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8093 1576..1764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8093.2.1prot_P-wetherbeei_contig8093.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8093 1313..1764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8093.2.1

>prot_P-wetherbeei_contig8093.2.1 ID=prot_P-wetherbeei_contig8093.2.1|Name=mRNA_P-wetherbeei_contig8093.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MSWWGRGKKEEPPEDGGFLQESPFGDAGGSDFVAPSSGGGLGGGAPGGAA
GALQEALLQEQQKVIFQQVITKLTEISFDCVDRPGTSLSSREQQCIVSSV
NKYLATSQFVVGRLNK*
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mRNA from alignment at P-wetherbeei_contig8093:1313..1764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8093.2.1 ID=mRNA_P-wetherbeei_contig8093.2.1|Name=mRNA_P-wetherbeei_contig8093.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=452bp|location=Sequence derived from alignment at P-wetherbeei_contig8093:1313..1764+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTGGTGGGGAAGAGGCAAAAAGGAGGAGCCGCCGGAGGACGGAGG CTTCCTCCAAGAATCACCATTTGGCGACGCGGGAGGGTCGGATTTTGTCG CGCCGTCGTCCGGAGGGGGATTGGGCGGCGGCGCCCCGGGTGGCGCCGCA GGAGCTCTGCAGGTAGGTTCTGATGAGGCAAAGCTCTTGCGCAATCCAAA GTCATCCTCTCTCCTTCATCACGTGCTCTCTACCTTTCCCATTTCGCTCT TTTGGACGAGCAGGAGGCACTCTTGCAGGAACAGCAGAAGGTGATCTTCC AGCAGGTCATCACCAAGCTGACGGAAATCTCTTTCGACTGCGTCGACCGG CCGGGGACCTCGCTCTCTTCCCGGGAGCAGCAGTGCATCGTCTCCAGCGT CAACAAGTATCTGGCGACGAGCCAATTCGTGGTGGGACGTTTAAACAAGT AA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8093:1313..1764+

>mRNA_P-wetherbeei_contig8093.2.1 ID=mRNA_P-wetherbeei_contig8093.2.1|Name=mRNA_P-wetherbeei_contig8093.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig8093:1313..1764+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTGGTGGGGAAGAGGCAAAAAGGAGGAGCCGCCGGAGGACGGAGG
CTTCCTCCAAGAATCACCATTTGGCGACGCGGGAGGGTCGGATTTTGTCG
CGCCGTCGTCCGGAGGGGGATTGGGCGGCGGCGCCCCGGGTGGCGCCGCA
GGAGCTCTGCAGGAGGCACTCTTGCAGGAACAGCAGAAGGTGATCTTCCA
GCAGGTCATCACCAAGCTGACGGAAATCTCTTTCGACTGCGTCGACCGGC
CGGGGACCTCGCTCTCTTCCCGGGAGCAGCAGTGCATCGTCTCCAGCGTC
AACAAGTATCTGGCGACGAGCCAATTCGTGGTGGGACGTTTAAACAAGTA
A
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