mRNA_P-wetherbeei_contig8070.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8070.1.1
Unique NamemRNA_P-wetherbeei_contig8070.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8070.1.1 vs. uniprot
Match: A0A7C4XMS3_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XMS3_9HYPH)

HSP 1 Score: 154 bits (389), Expect = 8.450e-42
Identity = 82/181 (45.30%), Postives = 109/181 (60.22%), Query Frame = 1
Query:   19 RMQRRIDAYAPGVRARIEPLIRRSRALDDLAESFPALLFALATGFGSDAARIATLDAVETGVSLKEAAARIGLPMWLRKLPASAFVNPIVSPPRDPALAERLVSLIPAQPAAAAAWLERILIAHHCGRPDLALWVAQQFRTAKPVAQGSAFLGVLAWAWYSGRPEEERASALITTRWKPTL 561
            R  RRI+A+AP  R  ++ L      ++DLA+SFPALLFALATG+G+ A R A    ++ G  L+ AA  +GLP WLR LPA AF  P+ S P  P  A R+   IP+QPA A  WLER+L A   G  + ALW  +QFR  KP+A    FL + AWAW++  P+      L+   W+P+L
Sbjct:   23 RRTRRIEAFAPDYRRFVQDLANSCCRIEDLADSFPALLFALATGYGTPAGREAAFALIKAGAPLRRAADALGLPWWLRHLPAQAFTGPLGSVPSAPEFAARIAPFIPSQPALAGPWLERVLYACQAGHAEFALWTGRQFRGPKPLASERTFLELTAWAWHAFHPDTP-GHRLLRKAWEPSL 202          
BLAST of mRNA_P-wetherbeei_contig8070.1.1 vs. uniprot
Match: A0A2W4MZL4_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4MZL4_9PROT)

HSP 1 Score: 124 bits (312), Expect = 1.690e-32
Identity = 69/174 (39.66%), Postives = 102/174 (58.62%), Query Frame = 1
Query:    1 PLMLDERMQRR---IDAYAPGVRARIEPLIRRSRALDDLAESFPALLFALATGFGSDAARIATLDAVETGVSLKEAAARIGLPMWLRKLPASAFVNPIVSPPRDPALAERLVSLIPAQPAAAAAWLERILIAHHCGRPDLALWVAQQFRTAKPVAQGSAFLGVLAWAWYSGRPE 513
            P++L +   RR   + A+    R +++ L ++     +LAE+FPALLFALAT FG+  AR   +  +E G  L+EAA  +G+P W+RKLP  AF   +   P DP  A+R+V L+PA P  AA WL+R+  A+    P+ ALWVA+  R   P+        V AWAW++G+ +
Sbjct:   17 PIVLADGTSRRSQFLQAFHYSFRRKVDELAQQKHCFAELAETFPALLFALATDFGTAEARKRAIAHLEAGSRLREAAKALGVPWWMRKLPPQAFKKRLEQVPDDPLFAKRIVDLLPANPGMAAKWLDRVFQAYRLCGPEFALWVARHERFHAPLLTDPPLPYVAAWAWFAGQKD 190          
BLAST of mRNA_P-wetherbeei_contig8070.1.1 vs. uniprot
Match: A0A7C2LRE8_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2LRE8_9HYPH)

HSP 1 Score: 123 bits (308), Expect = 5.540e-30
Identity = 70/164 (42.68%), Postives = 96/164 (58.54%), Query Frame = 1
Query:   19 RMQRRIDAYAPGVRARIEPLIRRSRALDDLAESFPALLFALATGFGSDAARIATLDAVETGVSLKEAAARIGLPMWLRKLPASAFVNPIVSPPRDPALAERLVSLIPAQPAAAAAWLERILIAHHCGRPDLALWVAQQFRTAKPVAQGSAFLGVLAWAWYSGRP 510
            R  RR+D++ P  R  +  L   S  L+DLA++FPALLFAL +G+     R    + V  G  L+EAA  +GLP WLR+LPA AF  P+ + PRD A + R+ SL+P +   A  WL+R+  A     P+ ALW+A+Q   A P     A   + AWAW+SGRP
Sbjct:   24 RRARRLDSFHPCYRRYVAELTACSSELEDLADTFPALLFALVSGYAGPGQRERCFNLVCEGAPLREAADVLGLPWWLRRLPAPAFAEPLPAFPRDEAFSFRMASLVPREQRLAPLWLQRVSYAFEAAGPEYALWLARQHDLAGP--HEDALRLMAAWAWFSGRP 185          
BLAST of mRNA_P-wetherbeei_contig8070.1.1 vs. uniprot
Match: A0A2W4RZ73_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RZ73_9PROT)

HSP 1 Score: 122 bits (307), Expect = 7.100e-30
Identity = 68/181 (37.57%), Postives = 104/181 (57.46%), Query Frame = 1
Query:   19 RMQRRIDAYAPGVRARIEPLIRRSRALDDLAESFPALLFALATGFGSDAARIATLDAVETGVSLKEAAARIGLPMWLRKLPASAFVNPIVSPPRDPALAERLVSLIPAQPAAAAAWLERILIAHHCGRPDLALWVAQQFRTAKPVAQGSAFLGVLAWAWYSGRPEEERASALITTRWKPTL 561
            R  + + ++    R R++ +  ++   ++LAE+FP LLFALAT +G+  AR A +  + +G  L+EAA  +GLP W+RKLP  AF   + + P DP  + R+V+L+P  PA +A WLER+  A+    P+ ALWVA+  R   P+    A   V AWAW++  PE      L+   W P +
Sbjct:   26 RRSQLLQSFHFSCRRRVDEIANQAACFEELAETFPGLLFALATNYGTAEARRAAVAHLISGSRLREAANALGLPWWMRKLPPQAFNKRLETLPDDPKFSARIVNLLPTVPAISAKWLERVTQAYRICGPEFALWVARHDRFHAPLITDPALPYVAAWAWFADHPET-LGGQLLRRPWTPNM 205          
BLAST of mRNA_P-wetherbeei_contig8070.1.1 vs. uniprot
Match: A0A1Q3JS10_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium 64-6 TaxID=1895710 RepID=A0A1Q3JS10_9PROT)

HSP 1 Score: 115 bits (288), Expect = 6.040e-28
Identity = 69/174 (39.66%), Postives = 90/174 (51.72%), Query Frame = 1
Query:   43 YAPGVRARIEPLIRRSRALDDLAESFPALLFALATGFGSDAARIATLDAVETGVSLKEAAARIGLPMWLRKLPASAFVNPIVSPPRDPALAERLVSLIPAQPAAAAAWLERILIAHHCGRPDLALWVAQQFRTAKPVAQGSAFLGVLAWAWYSGRPEEERASALITTRWKPTLG 564
            +    R +I  L    R ++DLA SFPALLFALAT + +   R   LDA+  G  LK  A  +GLP WLR+LP +A   P+   P DP  A   V  +P QP A   WL+ I +A      D+ALW A+  R   PVA  +  L  LAWA+Y+  P+   A  +    W P  G
Sbjct:   27 FPASFRTQIAELTEGGRNIEDLAASFPALLFALATDYATPERRRVALDAILAGKKLKAVAQLLGLPFWLRRLPPAALTGPLPVLPDDPDFALTAVPALPRQPEAMLPWLDFISLADRLAGRDVALWFARHHRLTPPVAANAEALWTLAWAFYAKHPDT-LAGRIQRRSWTPRTG 199          
BLAST of mRNA_P-wetherbeei_contig8070.1.1 vs. uniprot
Match: A0A1E4CSW5_9HYPH (Uncharacterized protein n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A1E4CSW5_9HYPH)

HSP 1 Score: 117 bits (292), Expect = 6.350e-28
Identity = 70/174 (40.23%), Postives = 91/174 (52.30%), Query Frame = 1
Query:   43 YAPGVRARIEPLIRRSRALDDLAESFPALLFALATGFGSDAARIATLDAVETGVSLKEAAARIGLPMWLRKLPASAFVNPIVSPPRDPALAERLVSLIPAQPAAAAAWLERILIAHHCGRPDLALWVAQQFRTAKPVAQGSAFLGVLAWAWYSGRPEEERASALITTRWKPTLG 564
            +    R +I  L    R ++DLA SFPALLFALAT + +   R A LDA+  G  LK  A  +GLP WLR+LP +A   P+   P DP  A   V  +P QP A   WL+ I +A      D+ALW A+  R   PVA  +  L  LAWA+Y+  P+   A  +    W P  G
Sbjct:   27 FPASFRTQIAELTEGGRNIEDLAASFPALLFALATDYATPERRRAALDAILAGKKLKAVAQLLGLPFWLRRLPPAALTGPLPVLPDDPDFALTAVPALPRQPEAMLPWLDFISLADRIAGRDVALWFARHHRLTPPVAANTEALWTLAWAFYAKHPDT-LAGRIQRRSWTPRTG 199          
BLAST of mRNA_P-wetherbeei_contig8070.1.1 vs. uniprot
Match: A0A6N6T388_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T388_9HYPH)

HSP 1 Score: 110 bits (276), Expect = 1.770e-25
Identity = 67/164 (40.85%), Postives = 89/164 (54.27%), Query Frame = 1
Query:   19 RMQRRIDAYAPGVRARIEPLIRRSRALDDLAESFPALLFALATGFGSDAARIATLDAVETGVSLKEAAARIGLPMWLRKLPASAFVNPIVSPPRDPALAERLVSLIPAQPAAAAAWLERILIAHHCGRPDLALWVAQQFRTAKPVAQGSAFLGVLAWAWYSGRP 510
            R +RR+  + P  R  +  L   S AL+DLA+SFPA+LFALATG+G+  +R      V  G  L+EAA  +GLP WLRKLP  AF  P+   P DP  A R+ SL+P     A  W  R+  A      + ALW+ +Q           AF+   AW+W+S RP
Sbjct:   20 RRERRLTDFHPAYRRYVRDLTCCSPALEDLADSFPAMLFALATGYGTPESRERAFGRVCDGAPLREAADALGLPWWLRKLPPQAFTAPLSPLPNDPDFAFRISSLVPRDTRLAPEWFNRVSHACEACGSEYALWLGRQPDLHSLADDHFAFMA--AWSWFSSRP 181          
BLAST of mRNA_P-wetherbeei_contig8070.1.1 vs. uniprot
Match: A0A431NUU4_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A431NUU4_9HYPH)

HSP 1 Score: 106 bits (264), Expect = 1.130e-23
Identity = 62/167 (37.13%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   19 RMQRRIDAYAPGVRARIEPLIRRSRALDDLAESFPALLFALATGFGSDAARIATLDAVETGVSLKEAAARIGLPMWLRKLPASAFVNPIVSPPRDPALAERLVSLIPAQPAAAAAWLERILIAHHCGRPDLALWVAQQFRTAKPVAQGSAFLGVLAWAWYSGRPEEE 519
            R +RRI+++ P  + ++  +   +  ++DLA+SFPALLFAL + +G+ AAR A L  V +G  LK A+  + LP WLR+LPA AF   + + P D     R+ S +P +   A AWL  +  A     P  ALW  +  + A    +    +G  AWAW+S  PE E
Sbjct:   28 RRKRRIESFHPAWQRQVAAITAGNPEIEDLADSFPALLFALVSDYGAPAARDAALAIVASGAPLKHASDALALPFWLRRLPALAFERRLPALPMDAEFGLRIASFVPRRSCEAVAWLGALSSAVTAAGPQYALWFTRAVKPAFMSEESLLMMG--AWAWFSQHPETE 192          
BLAST of mRNA_P-wetherbeei_contig8070.1.1 vs. uniprot
Match: A0A537S6D5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S6D5_9PROT)

HSP 1 Score: 106 bits (264), Expect = 1.250e-23
Identity = 65/164 (39.63%), Postives = 93/164 (56.71%), Query Frame = 1
Query:   19 RMQRRIDAYAPGVRARIEPLIRRSRALDDLAESFPALLFALATGFGSDAARIATLDAVETGVSLKEAAARIGLPMWLRKLPASAFVNPIVSPPRDPALAERLVSLIPAQPAAAAAWLERILIAHHCGRPDLALWVAQQFRTAKPVAQGSAFLGVLAWAWYSGRP 510
            R +RR++++ P  R  I  L   +  ++DLA+SFP LLFAL + + +   R    D V TG  L++AA  +GL  WLR+LPA AF  P+ + P D   +  + +LIP + +   AWL R+  A   G    ALW+A+Q   A P     AF+   AWAW+SGRP
Sbjct:   33 RRRRRLESFHPCYRRYIAELTCCASEVEDLADSFPGLLFALVSRYATVEQRQRAFDLVCTGEPLRQAADALGLAWWLRRLPAHAFTEPLPAFPVDGDFSLHIANLIPREDSLVPAWLARVSQAVEAGDLAYALWIARQHDLAGPPEDLFAFMA--AWAWFSGRP 194          
BLAST of mRNA_P-wetherbeei_contig8070.1.1 vs. uniprot
Match: A0A0D6JL93_9HYPH (Uncharacterized protein n=1 Tax=Candidatus Filomicrobium marinum TaxID=1608628 RepID=A0A0D6JL93_9HYPH)

HSP 1 Score: 105 bits (262), Expect = 1.540e-23
Identity = 67/188 (35.64%), Postives = 99/188 (52.66%), Query Frame = 1
Query:   13 DERMQRRIDAYAPGVRARIEPLIRRSRALDDLAESFPALLFALATGFGSDAARIATLDAVETGVSLKEAAARIGLPMWLRKLPASAFVNPIVSPPRDPALAERLVSLIPAQPAAAAAWLERILIAHHCGRPDLALWVAQQFRTAKPVAQGSA----FLGVLAWAWYSGRPEEERASALITTRWKPTLG 564
            + R  RR++A+ P  R  IE L++ S  L+DLA+SFP LLFALATG+G  A + A++ A+  G+ L+ AA  + LP WLR+LP +A+ + I   PR+   +  +V LIP Q +    WL  I   +       ALW A+    +  V         F  + AWAW++ R E      L+   W   +G
Sbjct:   16 ETRRYRRLEAFNPAFRRDIERLMQVSPELEDLADSFPGLLFALATGYGKPAKQRASIQAIRRGLPLQRAAMTLSLPWWLRRLPPAAYTHKISMLPRNVEFSRHVVDLIPTQTSDMGPWLWAIEHGYRGCHWHFALWAARWLSRSNRVLASPGGENNFRFLTAWAWHAER-EGTPGHQLVRKPWSSEMG 202          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8070.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7C4XMS3_9HYPH8.450e-4245.30Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A2W4MZL4_9PROT1.690e-3239.66Uncharacterized protein (Fragment) n=1 Tax=Proteob... [more]
A0A7C2LRE8_9HYPH5.540e-3042.68Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A2W4RZ73_9PROT7.100e-3037.57Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A1Q3JS10_9PROT6.040e-2839.66Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A1E4CSW5_9HYPH6.350e-2840.23Uncharacterized protein n=2 Tax=unclassified Hypho... [more]
A0A6N6T388_9HYPH1.770e-2540.85Uncharacterized protein n=1 Tax=Hyphomicrobiaceae ... [more]
A0A431NUU4_9HYPH1.130e-2337.13Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A537S6D5_9PROT1.250e-2339.63Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A0D6JL93_9HYPH1.540e-2335.64Uncharacterized protein n=1 Tax=Candidatus Filomic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8070contigP-wetherbeei_contig8070:3..566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog398525.KB900701_gene7454
PFAMsPcfJ
Model size564
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.96e-24
EggNOG OGs28X2W@1|root,2ZJ1E@2|Bacteria,1R92Z@1224|Proteobacteria,2TS5H@28211|Alphaproteobacteria,3JXJZ@41294|Bradyrhizobiaceae
Cds size558
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187018.2643468-CDS-P-wetherbeei_contig8070:2..5601683187018.2643468-CDS-P-wetherbeei_contig8070:2..560Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8070 3..560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187018.2776284-UTR-P-wetherbeei_contig8070:560..5661683187018.2776284-UTR-P-wetherbeei_contig8070:560..566Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8070 561..566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8070.1.1prot_P-wetherbeei_contig8070.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8070 3..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8070.1.1

>prot_P-wetherbeei_contig8070.1.1 ID=prot_P-wetherbeei_contig8070.1.1|Name=mRNA_P-wetherbeei_contig8070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MLDERMQRRIDAYAPGVRARIEPLIRRSRALDDLAESFPALLFALATGFG
SDAARIATLDAVETGVSLKEAAARIGLPMWLRKLPASAFVNPIVSPPRDP
ALAERLVSLIPAQPAAAAAWLERILIAHHCGRPDLALWVAQQFRTAKPVA
QGSAFLGVLAWAWYSGRPEEERASALITTRWKPTLG
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mRNA from alignment at P-wetherbeei_contig8070:3..566-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8070.1.1 ID=mRNA_P-wetherbeei_contig8070.1.1|Name=mRNA_P-wetherbeei_contig8070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig8070:3..566- (Phaeothamnion wetherbeei SAG_119_79)
CCCCTCATGCTCGACGAGCGCATGCAGCGCCGCATCGACGCGTATGCTCC GGGCGTCCGCGCTCGCATCGAGCCGTTGATCCGGCGTTCGCGCGCGCTCG ATGATCTCGCCGAGAGTTTTCCCGCGCTCCTGTTCGCGCTCGCCACCGGT TTCGGCAGCGATGCCGCCCGGATTGCCACCCTCGACGCGGTCGAGACGGG GGTGTCGCTGAAGGAAGCGGCCGCGCGCATCGGACTTCCCATGTGGCTGC GCAAGTTGCCGGCGTCCGCGTTCGTCAATCCGATCGTTTCGCCACCGCGC GACCCGGCACTGGCCGAACGTCTGGTTTCGCTCATACCGGCCCAACCGGC AGCCGCTGCCGCCTGGCTCGAGCGCATCCTGATCGCGCACCATTGCGGTC GCCCCGACCTCGCCTTGTGGGTTGCCCAGCAGTTCCGCACCGCAAAGCCG GTTGCGCAAGGCTCGGCATTCCTCGGCGTGCTCGCCTGGGCCTGGTATTC GGGGCGCCCCGAGGAGGAAAGGGCGTCGGCCCTCATCACCACGCGCTGGA AGCCGACGCTGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8070:3..566-

>mRNA_P-wetherbeei_contig8070.1.1 ID=mRNA_P-wetherbeei_contig8070.1.1|Name=mRNA_P-wetherbeei_contig8070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig8070:3..566- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGACGAGCGCATGCAGCGCCGCATCGACGCGTATGCTCCGGGCGT
CCGCGCTCGCATCGAGCCGTTGATCCGGCGTTCGCGCGCGCTCGATGATC
TCGCCGAGAGTTTTCCCGCGCTCCTGTTCGCGCTCGCCACCGGTTTCGGC
AGCGATGCCGCCCGGATTGCCACCCTCGACGCGGTCGAGACGGGGGTGTC
GCTGAAGGAAGCGGCCGCGCGCATCGGACTTCCCATGTGGCTGCGCAAGT
TGCCGGCGTCCGCGTTCGTCAATCCGATCGTTTCGCCACCGCGCGACCCG
GCACTGGCCGAACGTCTGGTTTCGCTCATACCGGCCCAACCGGCAGCCGC
TGCCGCCTGGCTCGAGCGCATCCTGATCGCGCACCATTGCGGTCGCCCCG
ACCTCGCCTTGTGGGTTGCCCAGCAGTTCCGCACCGCAAAGCCGGTTGCG
CAAGGCTCGGCATTCCTCGGCGTGCTCGCCTGGGCCTGGTATTCGGGGCG
CCCCGAGGAGGAAAGGGCGTCGGCCCTCATCACCACGCGCTGGAAGCCGA
CGCTGGGG
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