mRNA_P-wetherbeei_contig7904.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7904.1.2 vs. uniprot
Match: D7FX84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX84_ECTSI) HSP 1 Score: 186 bits (472), Expect = 3.600e-49 Identity = 122/294 (41.50%), Postives = 162/294 (55.10%), Query Frame = 1
Query: 1 QVLLFSQSTKMLDMLQTLMDKHGYFTSRLDGSVNSKERQVIINDFTRDPTK-FVFLMSTKACGLGINLQSASRVIIYDVNWNPSFDQQAQDRAYRQGCRLSFSALGGLGAIFRLVSVGTMEEMTYMRQIYKVQLGAAALDPEGQGGRRQFRAIQGVKGKEGELFGMHNLL-----------RLEATAAAAAMGSDGRGDGLQMAAVNDLTSAIEQGVKDAARALGRRRXXXXXXXXXXXXXDAGCGGISSXXXXXXXXXXGAGEDIDECKSLLELLGIDAFAHDDMVAKDERDE 846
+VL+FS ST MLD+L++ + GY RLDG+ +SKERQ IN+F D FVFL+ST+A G G+NL +ASRV++YDVNWNP+ QAQDRAYR G + A+FRL+S GT+EEM YMRQIYK+Q+ +AA+ + +GGRRQF A+QG K ++GELFG+ NLL R++ A AA + G G + G A + G G G ED +E LL LG+DA+ HD +VAKDE +E
Sbjct: 893 KVLVFSWSTAMLDVLESFVGAKGYVYRRLDGTTSSKERQARINEFNSDRAGVFVFLISTRAGGQGLNLHTASRVVLYDVNWNPALGLQAQDRAYRIGQKRKV-------AVFRLISKGTIEEMCYMRQIYKLQITSAAMGDQARGGRRQFNAVQGSKEQQGELFGIQNLLKFSDDSLLKTLRMKHEAGLAAATATGGGAAXXXXXXXXXAGSKGVGGIAGVDAADEEDLVVAMKNALGLSKEGGAKGEGE----------GPPED-NELAGLLGDLGVDAYTHDQLVAKDEGEE 1168
BLAST of mRNA_P-wetherbeei_contig7904.1.2 vs. uniprot
Match: A0A836CAD9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD9_9STRA) HSP 1 Score: 166 bits (420), Expect = 3.020e-42 Identity = 92/180 (51.11%), Postives = 123/180 (68.33%), Query Frame = 1
Query: 1 QVLLFSQSTKMLDMLQTLMDKHGYFTSRLDGSVNSKERQVIINDFTRDPTKFVFLMSTKACGLGINLQSASRVIIYDVNWNPSFDQQAQDRAYRQGCRLSFSALGGLGA-IFRLVSVGTMEEMTYMRQIYKVQLGAAALDPE-GQGGRRQFRAIQGVKGKEGELFGMHNLLRLEATAAAA 534
+ LL S ST+ LD+++ + GY RLDG+ +RQ I+++F R P V L+ST+A G+G+N+ ASRVIIYDVNWNPS D QAQDR YR G + A+ ++RL+S GT+EE+ YMRQ+YKVQL +ALD + G GG R F A+QGV+G+EGELFG+ NLLR T+ A
Sbjct: 976 RTLLCSLSTQTLDVIEACVIGWGYERLRLDGATPLDQRQRIVDEFNRMPGAPVLLVSTRAGGIGLNINGASRVIIYDVNWNPSHDHQAQDRCYRIGQDKADKAVEDKAVEVYRLISCGTIEELIYMRQLYKVQLAGSALDSKAGGGGARHFNAMQGVRGEEGELFGVANLLRHSDTSMLA 1155
BLAST of mRNA_P-wetherbeei_contig7904.1.2 vs. uniprot
Match: A0A7R9TZ04_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TZ04_MICPS) HSP 1 Score: 152 bits (385), Expect = 6.410e-42 Identity = 76/171 (44.44%), Postives = 112/171 (65.50%), Query Frame = 1
Query: 1 QVLLFSQSTKMLDMLQTLMDKHGYFTSRLDGSVNSKERQVIINDFTRDPTKFVFLMSTKACGLGINLQSASRVIIYDVNWNPSFDQQAQDRAYRQGCRLSFSALGGLGAIFRLVSVGTMEEMTYMRQIYKVQLGAAALDPEGQGGRRQFRAIQGVKGKEGELFGMHNLLRL 513
+VLLFS+ST++LD+L+ + + GY RLDG RQ +++DF + FVFL+STKA G+G+N+ SA+RV+++D +WNP+ D QAQDRAYR G R + ++R ++ T+EE+ Y RQ+YK Q A+D + RR F +QG K ++GELFG+ NL L
Sbjct: 22 KVLLFSKSTRLLDILEKFLSRRGYVYCRLDGGTAQNARQPLVDDFNNSSSMFVFLLSTKAGGVGLNITSANRVVVFDPDWNPALDLQAQDRAYRIGQRRDVN-------VYRFIAADTIEEIVYQRQVYKQQQSNVAVDAVRE--RRYFEGVQGDKRRQGELFGLENLFTL 183
BLAST of mRNA_P-wetherbeei_contig7904.1.2 vs. uniprot
Match: D7FIQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ3_ECTSI) HSP 1 Score: 164 bits (416), Expect = 1.040e-41 Identity = 88/172 (51.16%), Postives = 118/172 (68.60%), Query Frame = 1
Query: 1 QVLLFSQSTKMLDMLQTLMDKHGYFTSRLDGSVNSKERQVIINDFTRDPT--KFVFLMSTKACGLGINLQSASRVIIYDVNWNPSFDQQAQDRAYRQGCRLSFSALGGLGAIFRLVSVGTMEEMTYMRQIYKVQLGAAALDPEGQGGRRQFRAIQGVKGKEGELFGMHNLLR 510
+VLLFS ST MLD+LQ L GY +LDG+ +RQ +I+ FT+ VFL+ST A G G+NLQ+AS+VI+YDVNWNP+ D QA+DRAYR G +FRLVS GT+EE+TYMRQIYK+Q AA + + +GG RQF +QGV+ ++GEL+G+ NL++
Sbjct: 761 KVLLFSYSTAMLDILQALCSSQGYTFLKLDGNTAKDQRQKMIDRFTKQNAIQNNVFLISTTAGGTGLNLQAASKVILYDVNWNPAQDAQAEDRAYRIGQLKEVE-------VFRLVSTGTIEELTYMRQIYKLQTSAATMGEKAEGGLRQFEGVQGVREEQGELWGISNLMK 925
BLAST of mRNA_P-wetherbeei_contig7904.1.2 vs. uniprot
Match: A0A7S0IDP1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IDP1_MICPS) HSP 1 Score: 154 bits (388), Expect = 1.910e-41 Identity = 80/171 (46.78%), Postives = 112/171 (65.50%), Query Frame = 1
Query: 1 QVLLFSQSTKMLDMLQTLMDKHGYFTSRLDGSVNSKERQVIINDFTRDPTKFVFLMSTKACGLGINLQSASRVIIYDVNWNPSFDQQAQDRAYRQGCRLSFSALGGLGAIFRLVSVGTMEEMTYMRQIYKVQLGAAALDPEGQGGRRQFRAIQGVKGKEGELFGMHNLLRL 513
+VLLFS S ++L +L+ + + GY +RLDGS KERQ +++DF + FVFL+ST A G+G+N+ SA+RV+I+D NWNP+ D QAQDRAYR G R ++RL++ GT+EEM Y RQ+YK Q A+D + RR F +QG K +GELFG+ N+ L
Sbjct: 3 KVLLFSTSARLLAVLEKFLTQRGYVYARLDGSTAGKERQKLVDDFNASESLFVFLLSTGAGGVGLNITSANRVVIFDPNWNPAKDAQAQDRAYRIGQRRDVD-------VYRLLAAGTIEEMVYQRQVYKQQQSNVAVDASKE--RRYFEGVQGDKQHQGELFGLSNMFTL 164
BLAST of mRNA_P-wetherbeei_contig7904.1.2 vs. uniprot
Match: UPI000C7638E7 (DNA excision repair protein ERCC-6-like 2 isoform X1 n=4 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7638E7) HSP 1 Score: 161 bits (407), Expect = 8.290e-41 Identity = 82/171 (47.95%), Postives = 119/171 (69.59%), Query Frame = 1
Query: 1 QVLLFSQSTKMLDMLQTLMDKHGYFTSRLDGSVNSKERQVIINDFTRDPTKFVFLMSTKACGLGINLQSASRVIIYDVNWNPSFDQQAQDRAYRQGCRLSFSALGGLGAIFRLVSVGTMEEMTYMRQIYKVQLGAAALDPEGQGGRRQFRAIQGVKGKEGELFGMHNLLRL 513
+VLLFS ST++LD+L + GY +RLDG+ ++RQ ++N+F DP FVFL+STKA G+G+N+ A+ VI++D NWNPS D QAQDRAYR G + ++RL+SVG +EE+ Y+RQ+YK QL ++++D G+ RR F A+QG ++GELFG+ NL R+
Sbjct: 131 KVLLFSHSTRVLDILSMFLRSKGYTYTRLDGNTKMEQRQRLVNEFNTDPGIFVFLVSTKAGGVGLNITGANNVIVFDPNWNPSHDLQAQDRAYRIGQTRDVN-------VYRLISVGCIEEIIYLRQVYKQQLASSSVD--GETARRYFLAVQGDPTRKGELFGIRNLFRV 292
BLAST of mRNA_P-wetherbeei_contig7904.1.2 vs. uniprot
Match: V4B480_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B480_LOTGI) HSP 1 Score: 160 bits (404), Expect = 9.500e-41 Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = 1
Query: 1 QVLLFSQSTKMLDMLQTLMDKHGYFTSRLDGSVNSKERQVIINDFTRDPTKFVFLMSTKACGLGINLQSASRVIIYDVNWNPSFDQQAQDRAYRQGCRLSFSALGGLGAIFRLVSVGTMEEMTYMRQIYKVQLGAAALDPEGQGGRRQFRAIQGVKGKEGELFGMHNLLRL 513
+VL+FS STK+LD+L+ + Y RLDGSV++K+R ++ +F ++P F+FL+STKA GLG+NL A+RV+I+D NWNPS D QAQDRAYR G R ++RL+S GT+EE Y+RQIYK QLG + E +R F +QG + ++GELFG+ N+ +L
Sbjct: 451 KVLIFSLSTKLLDILEQYLISSSYEFRRLDGSVSNKKRMELVREFNKNPNIFIFLISTKAGGLGLNLTGANRVVIFDPNWNPSHDLQAQDRAYRIGQRQDVQ-------VYRLISAGTIEENVYLRQIYKQQLGNVVVSSENA--KRLFHGVQGNRFRQGELFGVQNMFQL 612
BLAST of mRNA_P-wetherbeei_contig7904.1.2 vs. uniprot
Match: A0A7S0GVF0_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GVF0_MICPS) HSP 1 Score: 159 bits (403), Expect = 5.060e-40 Identity = 80/168 (47.62%), Postives = 115/168 (68.45%), Query Frame = 1
Query: 1 QVLLFSQSTKMLDMLQTLMDKHGYFTSRLDGSVNSKERQVIINDFTRDPTKFVFLMSTKACGLGINLQSASRVIIYDVNWNPSFDQQAQDRAYRQGCRLSFSALGGLGAIFRLVSVGTMEEMTYMRQIYKVQLGAAALDPEGQGGRRQFRAIQGVKGKEGELFGMHNL 504
+VL+FS ST++LD+L+ M +HGY SRLDG+ N K RQ +++DF + F FL+ST+A G+G+N+ SA+RV+I+D NWNP+ D QAQDR+YR G R ++RL++ GT+EE+ Y RQ+YK Q A+ EG RR F +QG K ++GELFG+ N+
Sbjct: 675 KVLVFSVSTRLLDILERFMTRHGYVFSRLDGTTNQKHRQTVVDDFNASRSTFAFLLSTRAGGVGLNIVSANRVVIFDPNWNPALDLQAQDRSYRIGQRRDVD-------VYRLLTSGTLEELVYQRQVYKQQQSNVAM--EGVEERRYFEGVQGDKEQKGELFGVANV 833
BLAST of mRNA_P-wetherbeei_contig7904.1.2 vs. uniprot
Match: A0A7S0SII7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SII7_9CHLO) HSP 1 Score: 155 bits (392), Expect = 1.330e-39 Identity = 78/171 (45.61%), Postives = 115/171 (67.25%), Query Frame = 1
Query: 1 QVLLFSQSTKMLDMLQTLMDKHGYFTSRLDGSVNSKERQVIINDFTRDPTKFVFLMSTKACGLGINLQSASRVIIYDVNWNPSFDQQAQDRAYRQGCRLSFSALGGLGAIFRLVSVGTMEEMTYMRQIYKVQLGAAALDPEGQGGRRQFRAIQGVKGKEGELFGMHNLLRL 513
+VLLFS S ++LD+L+T + + GY + RLDG+ +ERQ +++DF + + F+FL+STKA G+G+N+ SA+RV+I+D NWNP+ D QAQDRAYR G + ++R ++ GT+EE+ Y RQ+YK Q ALD + RR F +QG K +GELFG+ N+ L
Sbjct: 319 KVLLFSCSVRLLDILETFLVRRGYVSCRLDGNTPQRERQKLVDDFNKSSSLFIFLLSTKAGGVGLNITSANRVVIFDPNWNPALDLQAQDRAYRIGQQRDVD-------VYRFLTSGTLEEIVYQRQVYKQQQSNMALDAVKE--RRYFEGVQGDKEHQGELFGLSNMFAL 480
BLAST of mRNA_P-wetherbeei_contig7904.1.2 vs. uniprot
Match: A0A067D4A1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D4A1_SAPPC) HSP 1 Score: 157 bits (397), Expect = 3.120e-39 Identity = 91/192 (47.40%), Postives = 121/192 (63.02%), Query Frame = 1
Query: 1 QVLLFSQSTKMLDMLQTLMDKHGYFTSRLDGSVNSKERQVIINDFTRDPTKFVFLMSTKACGLGINLQSASRVIIYDVNWNPSFDQQAQDRAYRQGCRLSFSALGGLGAIFRLVSVGTMEEMTYMRQIYKVQLGAAALDPEGQGGRRQFRAIQGVKGKEGELFGMHNLLRLEATAAAAAMGSDGRGDGLQMA 576
+VLLFS+S +MLD+LQ + RLDGS ER ++ F RDPT VFL+STKA GLG+N+ SA+ V+I+D +WNP+ D QAQDRAYR G +FRL+++GT+EEM Y RQIYK QL L +G+ G R F AI GVKG+ GELFG+ NLL+ + A+ + DG+ +A
Sbjct: 725 KVLLFSRSVRMLDILQAFLISKACAYVRLDGSTKVDERLALVQRFNRDPTLGVFLISTKAGGLGLNITSATNVVIFDPSWNPAHDCQAQDRAYRIGQTRDVK-------VFRLITLGTIEEMIYARQIYKQQLTDTTL--KGKMGPRYFEAIIGVKGQHGELFGIRNLLQFKPQGVMKAIQDNATLDGIPIA 907 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7904.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7904.1.2 >prot_P-wetherbeei_contig7904.1.2 ID=prot_P-wetherbeei_contig7904.1.2|Name=mRNA_P-wetherbeei_contig7904.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=310bp MLDMLQTLMDKHGYFTSRLDGSVNSKERQVIINDFTRDPTKFVFLMSTKAback to top mRNA from alignment at P-wetherbeei_contig7904:121..2124+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7904.1.2 ID=mRNA_P-wetherbeei_contig7904.1.2|Name=mRNA_P-wetherbeei_contig7904.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2004bp|location=Sequence derived from alignment at P-wetherbeei_contig7904:121..2124+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7904:121..2124+ >mRNA_P-wetherbeei_contig7904.1.2 ID=mRNA_P-wetherbeei_contig7904.1.2|Name=mRNA_P-wetherbeei_contig7904.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=930bp|location=Sequence derived from alignment at P-wetherbeei_contig7904:121..2124+ (Phaeothamnion wetherbeei SAG_119_79)back to top |