mRNA_P-wetherbeei_contig7850.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7850.3.1
Unique NamemRNA_P-wetherbeei_contig7850.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7850.3.1 vs. uniprot
Match: D7FPR2_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR2_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.710e-30
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 MKASKAARGSTSAPAVQLYRRIIKELPRVLHIYDMDTDLIVARTALYNAFKKNANVRDPRVVDMLISKGYMELEETLLQFKQKTHLMRILEPHQTESPLRSKREGFLNQFYAG 339
            MK+   +R  T++PA QLYR I KE+PR+L IYD+D D   AR A+   F+ N +++DPRVVD L+ KGYM+LEET +Q+KQKTHL+R+L P    +  R+ ++ F+++F AG
Sbjct:   10 MKSVGPSRTGTASPATQLYRAIAKEVPRILTIYDVDMDFAQARAAIALYFRNNGHLKDPRVVDALVMKGYMDLEETTMQYKQKTHLLRLLNPS-AHNDARAVKDDFMDKFMAG 121          
BLAST of mRNA_P-wetherbeei_contig7850.3.1 vs. uniprot
Match: H3GMX3_PHYRM (Complex1_LYR_dom domain-containing protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=H3GMX3_PHYRM)

HSP 1 Score: 108 bits (269), Expect = 5.290e-28
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    7 ASKAARGSTSAPAVQLYRRIIKELPRVLHIYDMDTDLIVARTALYNAFKKNANVRDPRVVDMLISKGYMELEETLLQFKQKTHLMRILEPHQT---ESPLRSKREGFLNQFYAG 339
            A KAA+ S S+PAV LYR I K++PRVL +YD+  +   AR A+   F+++A V+DPRVVDMLI+K  MELEETL+Q+KQK HLM++LE  Q      PL    +  L +FYAG
Sbjct:    7 AEKAAQASASSPAVTLYRYITKQVPRVLTLYDIPMEPADARLAVQALFRQHAAVKDPRVVDMLITKANMELEETLMQWKQKVHLMKLLEEGQALRQPKPLEDSVDQALEKFYAG 120          
BLAST of mRNA_P-wetherbeei_contig7850.3.1 vs. uniprot
Match: A0A6A3EKI3_9STRA (Complex1_LYR_dom domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3EKI3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.490e-26
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    7 ASKAARGSTSAPAVQLYRRIIKELPRVLHIYDMDTDLIVARTALYNAFKKNANVRDPRVVDMLISKGYMELEETLLQFKQKTHLMRILEPHQTESPLRSKR------EGFLNQFYAG 339
            A KAA  STS+PAV LYR I K++PRVL +YD+  +   AR A+   F+++A V+DPRVVDMLI+K  MELEETL+Q+KQK HL+++LE  Q    LR+ +      E  L++F+AG
Sbjct:    7 AEKAAAASTSSPAVTLYRYITKQVPRVLTLYDIPMEPADARLAVQALFRQHATVKDPRVVDMLITKANMELEETLMQWKQKVHLVKLLEEGQA---LRAPKQQVDSVEQSLDKFFAG 120          
BLAST of mRNA_P-wetherbeei_contig7850.3.1 vs. uniprot
Match: A0A835YPN0_9STRA (NADH dehydrogenase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.360e-26
Identity = 47/82 (57.32%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   25 GSTSAPAVQLYRRIIKELPRVLHIYDMDTDLIVARTALYNAFKKNANVRDPRVVDMLISKGYMELEETLLQFKQKTHLMRIL 270
            G ++AP + LYR I +E+PRVL IYD+D D  VAR  +   F+KN +++DP V+ +++SKGYMELEET+LQFKQ+THLMR+L
Sbjct:   18 GGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVARRKVNELFRKNGHLQDPEVIKIVVSKGYMELEETVLQFKQRTHLMRLL 99          
BLAST of mRNA_P-wetherbeei_contig7850.3.1 vs. uniprot
Match: A0A0P1B7E0_PLAHL (NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7E0_PLAHL)

HSP 1 Score: 102 bits (255), Expect = 6.810e-26
Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    7 ASKAARGSTSAPAVQLYRRIIKELPRVLHIYDMDTDLIVARTALYNAFKKNANVRDPRVVDMLISKGYMELEETLLQFKQKTHLMRILEPHQT--ESPLRSKREGFLNQFYAG 339
            A KA+  ST++PAV LYR I K++PRVL +YD+  +   AR A+   F+++A V+DPR+VDMLI+K  MELEETL+Q+KQK HL+ +LE  QT  +  L +  +  L +F+AG
Sbjct:    7 AEKASAASTASPAVTLYRYITKQVPRVLTLYDISMEPSEARLAVQALFREHAEVKDPRIVDMLITKANMELEETLMQWKQKVHLLTLLERAQTLRQPKLVNSVDQSLEKFFAG 119          
BLAST of mRNA_P-wetherbeei_contig7850.3.1 vs. uniprot
Match: D0MZ75_PHYIT (Complex1_LYR_dom domain-containing protein n=14 Tax=Peronosporaceae TaxID=4777 RepID=D0MZ75_PHYIT)

HSP 1 Score: 102 bits (254), Expect = 9.930e-26
Identity = 57/114 (50.00%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    7 ASKAARGSTSAPAVQLYRRIIKELPRVLHIYDMDTDLIVARTALYNAFKKNANVRDPRVVDMLISKGYMELEETLLQFKQKTHLMRILEPHQT---ESPLRSKREGFLNQFYAG 339
            A KAA  S ++PAV LYR I K++PRVL +YD+  +   AR A+   F+++A+V+DPRVVDMLI+K  MELEETL+Q+KQK HL+ +L+  Q     +PL    +  L +FYAG
Sbjct:    7 AEKAAAASKASPAVTLYRYITKQVPRVLTLYDIPMEPAEARLAVQALFRQHADVKDPRVVDMLITKANMELEETLMQWKQKVHLVTLLDHAQALRQPTPLVDSVDQALEKFYAG 120          
BLAST of mRNA_P-wetherbeei_contig7850.3.1 vs. uniprot
Match: A0A4D9D5Z3_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Z3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.580e-25
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   40 PAVQLYRRIIKELPRVLHIYDMDTDLIVARTALYNAFKKNANVRDPRVVDMLISKGYMELEETLLQFKQKTHLMRILEPHQTESPLRSKREGFLNQFY 333
            P VQLYR I KELPRVL IYD D     AR  +   F+KNA+++DP +VDML+ KGYMELEETL+Q+KQKTHL+R+L    TE+P + + +    + +
Sbjct:   19 PVVQLYRTISKELPRVLTIYDADLAPAEARAQVQVLFRKNAHLQDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLLAAD-TEAPRKYREKNTFTEKF 115          
BLAST of mRNA_P-wetherbeei_contig7850.3.1 vs. uniprot
Match: K3W7P5_GLOUD (Complex1_LYR_dom domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7P5_GLOUD)

HSP 1 Score: 101 bits (251), Expect = 3.630e-25
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   25 GSTSAPAVQLYRRIIKELPRVLHIYDMDTDLIVARTALYNAFKKNANVRDPRVVDMLISKGYMELEETLLQFKQKTHLMRILEPHQTESPLRSKR-------EGFLNQFYAG 339
            G TS+PAV LYR I K++PRVL +YD+  +   AR A+   F+K+A+V+DPRVVDMLI+K  MELEETL+Q+KQK HL+ +LE   + + LR+ +       E  L  FYAG
Sbjct:   12 GKTSSPAVTLYRYITKQVPRVLTLYDISMEPAEARLAVQALFRKHADVKDPRVVDMLITKANMELEETLMQWKQKVHLLTLLE---SGAALRADKKNDVKTVEDSLANFYAG 120          
BLAST of mRNA_P-wetherbeei_contig7850.3.1 vs. uniprot
Match: A0A024FTL2_9STRA (Complex1_LYR_dom domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024FTL2_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.240e-25
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1
Query:   34 SAPAVQLYRRIIKELPRVLHIYDMDTDLIVARTALYNAFKKNANVRDPRVVDMLISKGYMELEETLLQFKQKTHLMRILEPHQTESPLRS-----KREGFLNQFYAG 339
            S+PAV LYR IIK++PRVL +YD+  +   AR A+   F+KNAN++DPRVVDMLI+K  MELEETLLQ+KQK HL+ +LE   T   LR+     K++ F N F AG
Sbjct:   15 SSPAVTLYRYIIKQVPRVLTLYDITMEPSEARLAIQALFRKNANIKDPRVVDMLITKANMELEETLLQWKQKVHLLTLLE---TGMQLRASADKVKKDPFEN-FIAG 117          
BLAST of mRNA_P-wetherbeei_contig7850.3.1 vs. uniprot
Match: A0A7S2XV13_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV13_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.410e-25
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:   40 PAVQLYRRIIKELPRVLHIYDMDTDLIVARTALYNAFKKNANVRDPRVVDMLISKGYMELEETLLQFKQKTHLMRILEPHQTESPLRSKREGFLNQFYAG 339
            P +QLYR+I+KELPRV+ IYD+D     A  A+   F+K+A+V+D RV+D+L++KGYM +EE  +Q+KQKTHLM IL+P +     +   E F  +FY G
Sbjct:   19 PVLQLYRKILKELPRVMIIYDVDMPKEEANAAIAYHFRKSAHVKDERVIDLLVAKGYMHVEEATMQYKQKTHLMSILDPWELSEKFKEP-ETFEEKFYKG 117          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7850.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR2_ECTSI1.710e-3049.56NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus... [more]
H3GMX3_PHYRM5.290e-2852.63Complex1_LYR_dom domain-containing protein n=4 Tax... [more]
A0A6A3EKI3_9STRA3.490e-2651.28Complex1_LYR_dom domain-containing protein n=3 Tax... [more]
A0A835YPN0_9STRA4.360e-2657.32NADH dehydrogenase (Fragment) n=1 Tax=Tribonema mi... [more]
A0A0P1B7E0_PLAHL6.810e-2649.56NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit... [more]
D0MZ75_PHYIT9.930e-2650.00Complex1_LYR_dom domain-containing protein n=14 Ta... [more]
A0A4D9D5Z3_9STRA3.580e-2553.06Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
K3W7P5_GLOUD3.630e-2550.89Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A024FTL2_9STRA4.240e-2555.14Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A7S2XV13_9STRA4.410e-2549.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7850contigP-wetherbeei_contig7850:1352..2340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra77907
PFAMsComplex1_LYR
Model size348
Max annot lvl4776|Peronosporales
KEGG koko:K03950
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.67e-29
EggNOG OGsKOG3426@1|root,KOG3426@2759|Eukaryota,3QFZ7@4776|Peronosporales
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone)
Ec32 orthologEc-20_001030.1
DescriptionComplex 1 protein (LYR family)
Cds size348
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187004.5895574-CDS-P-wetherbeei_contig7850:1351..14951683187004.5895574-CDS-P-wetherbeei_contig7850:1351..1495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7850 1352..1495 -
1683187004.6024551-CDS-P-wetherbeei_contig7850:1919..20001683187004.6024551-CDS-P-wetherbeei_contig7850:1919..2000Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7850 1920..2000 -
1683187004.6106527-CDS-P-wetherbeei_contig7850:2217..23401683187004.6106527-CDS-P-wetherbeei_contig7850:2217..2340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7850 2218..2340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7850.3.1prot_P-wetherbeei_contig7850.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7850 1352..2340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7850.3.1

>prot_P-wetherbeei_contig7850.3.1 ID=prot_P-wetherbeei_contig7850.3.1|Name=mRNA_P-wetherbeei_contig7850.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MKASKAARGSTSAPAVQLYRRIIKELPRVLHIYDMDTDLIVARTALYNAF
KKNANVRDPRVVDMLISKGYMELEETLLQFKQKTHLMRILEPHQTESPLR
SKREGFLNQFYAGQT*
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mRNA from alignment at P-wetherbeei_contig7850:1352..2340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7850.3.1 ID=mRNA_P-wetherbeei_contig7850.3.1|Name=mRNA_P-wetherbeei_contig7850.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=989bp|location=Sequence derived from alignment at P-wetherbeei_contig7850:1352..2340- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCAAGTAAGGCCGCAAGAGGGAGCACAAGCGCGCCCGCAGTGCA GCTGTATCGACGCATCATCAAGGAGCTCCCGCGTGTCCTCCACATCTACG ACATGGATACGGACCTCATCGTGGTGCGCGCCCTTCGTCTTTGCAACTTT AAGCTCTCTAGCGTAGGAGAGCAAGAAACTATCTCTCAAGCTCTTTTATG CGTACATATGGCCTTTGAACCCGTTAACCATGCCGGGCAACGAGGCTTTC GAGCTTCGCTTTTGTTTCGTTAATGTCTCTTCGTTTTGACGTTTGCATTC CTTGTAATTTTCATTCCCTCTCCTTCTCTGCTTCTTTCAGGCACGCACGG CATTATATAATGCGTTCAAGAAGAACGCAAATGTTCGCGACCCGCGAGTA GTAGATATGTTGATCAGCAAGGTGAAATCTTGAGGAAACTGTAGAAGCGA ATGAAGTTTTCCATGGAGTGGCGTCCCCCTTGTTCACCTTGCACCACGGT CTCCTTTCTTACCCAACGTCCCGTTTCCTCCACTTCCCTCTCAGCTGATT CTTTCGTTCCCCACACCCTCGCCTCTATCCGCGCGCCTGCCTCTTTTACT TCCACGATAATGATGTTTGGGTTGATTGCCACCAACCGCTGTCGCTTGGC GACAACGACGCCGGTCGCTGTGGCGACGACTGACGACGACGGTGACTCCG GCGACCCGGCCGTACCCGCAACGGTGGTGACGAACGACGGCGGATATAAC GGCAACAACAATTAATCGTTTCGGCGACTCCGGCGGTTCCCGCTGGCTGG CTTGCTGGCTGCCGTGGCCGCCGTTGCCGTCGTTTGGGCCGGCAGGGGTA CATGGAGCTGGAGGAGACGCTGCTTCAGTTCAAGCAAAAGACGCACCTGA TGCGCATCCTGGAGCCGCACCAGACGGAGAGCCCGCTGCGTAGCAAGCGG GAGGGATTCCTCAACCAGTTCTATGCCGGCCAGACATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7850:1352..2340-

>mRNA_P-wetherbeei_contig7850.3.1 ID=mRNA_P-wetherbeei_contig7850.3.1|Name=mRNA_P-wetherbeei_contig7850.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig7850:1352..2340- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCAAGTAAGGCCGCAAGAGGGAGCACAAGCGCGCCCGCAGTGCA
GCTGTATCGACGCATCATCAAGGAGCTCCCGCGTGTCCTCCACATCTACG
ACATGGATACGGACCTCATCGTGGCACGCACGGCATTATATAATGCGTTC
AAGAAGAACGCAAATGTTCGCGACCCGCGAGTAGTAGATATGTTGATCAG
CAAGGGGTACATGGAGCTGGAGGAGACGCTGCTTCAGTTCAAGCAAAAGA
CGCACCTGATGCGCATCCTGGAGCCGCACCAGACGGAGAGCCCGCTGCGT
AGCAAGCGGGAGGGATTCCTCAACCAGTTCTATGCCGGCCAGACATGA
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