mRNA_P-wetherbeei_contig7834.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7834.1.1
Unique NamemRNA_P-wetherbeei_contig7834.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7834.1.1 vs. uniprot
Match: A0A835ZBP4_9STRA (Alcohol dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.760e-6
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  472 SQDTMNFAAVHSIRAHTIVFPFSKTTEAYNAMLDGKYRVVLDMTKQ 609
            SQD M FA +H ++  T +FPF K  EAY+AM+ G +RVVLDMT++
Sbjct:  298 SQDAMAFAQLHGVKVTTKIFPFPKAKEAYDAMMAGSFRVVLDMTQE 343
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7834.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZBP4_9STRA6.760e-654.35Alcohol dehydrogenase n=1 Tax=Tribonema minus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7834contigP-wetherbeei_contig7834:1858..2967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog765952.PUV_19940
Preferred nameadhC
PFAMsADH_N,ADH_zinc_N
Model size882
Max annot lvl2|Bacteria
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273
KEGG koko:K00001,ko:K13953,ko:K13979
KEGG ReactionR00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310
KEGG Pathwayko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000547
EggNOG OGsCOG1064@1|root,COG1064@2|Bacteria
EC1.1.1.1
Descriptionalcohol dehydrogenase
Cds size258
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.6535177-UTR-P-wetherbeei_contig7834:1857..21271683187003.6535177-UTR-P-wetherbeei_contig7834:1857..2127Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7834 1858..2127 -
1683187003.6771052-UTR-P-wetherbeei_contig7834:2385..26451683187003.6771052-UTR-P-wetherbeei_contig7834:2385..2645Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7834 2386..2645 -
1683187003.6876385-UTR-P-wetherbeei_contig7834:2873..29671683187003.6876385-UTR-P-wetherbeei_contig7834:2873..2967Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7834 2874..2967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.6663625-CDS-P-wetherbeei_contig7834:2127..23851683187003.6663625-CDS-P-wetherbeei_contig7834:2127..2385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7834 2128..2385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7834.1.1prot_P-wetherbeei_contig7834.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7834 2128..2385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7834.1.1

>prot_P-wetherbeei_contig7834.1.1 ID=prot_P-wetherbeei_contig7834.1.1|Name=mRNA_P-wetherbeei_contig7834.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MRFSRRSRPLPPFMVEPDMKLSFISSASHIILSVPNLPTSQDTMNFAAVH
SIRAHTIVFPFSKTTEAYNAMLDGKYRVVLDMTKQ*
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mRNA from alignment at P-wetherbeei_contig7834:1858..2967-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7834.1.1 ID=mRNA_P-wetherbeei_contig7834.1.1|Name=mRNA_P-wetherbeei_contig7834.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1110bp|location=Sequence derived from alignment at P-wetherbeei_contig7834:1858..2967- (Phaeothamnion wetherbeei SAG_119_79)
AACGTCTCCAATGACTGCTCACTCCTTCTCGTCCCTGCTATTTCCCTTCT
CTTCTTTCGATTTCCTTCTTCAATTTCTTCTTTTTCTCCACCAGGCGGAG
GACCCGGCCGAGGCGCTACAGGCGCTGGGCGGTGCCTCGATGATCGTGGC
GACGGCCTTCAGCAGCAAGGCCATTTCAGGTCTGGTCGGCGGCCTTGATG
TGTCTGGCTCGCTAGTCGTCATCGGCATCGACGCGGAGCCGTTGGCGGTG
CCCGGCGTCCCGCTGCTGCTGGCACGGCGGTCGGTGTGCGGTCATCCGTC
CGGCACATCTATGGATTCGCAGGTGAGTGAGGCTGCTTGCGACAACAGGC
GATGGGTAGTTAGCTGTCGTGACAACTGCGGGGGCAGTGTCGGCGGTTTG
GCAACAGCGCCGGGGCATTTATTTTGGTTACGGCCGGATCAGCTGTCGCG
GTCTTGCCCGTAGCGTGCAGGTGCAGCAGCGATGGCGGTGATGGCGCATT
GTTGGAGAGGAGTGCCGTTACTAATGGCAGTGGGTTCCCCTGGACGAATG
GTTATTGTAAGGCTTTTGAAGGGGAAATTTCTATGAGATTTTCTAGGCGT
AGTCGCCCGCTTCCACCTTTTATGGTGGAACCTGACATGAAACTCTCTTT
CATCTCCTCAGCGTCCCATATAATCCTCTCGGTTCCCAATCTGCCCACGT
CTCAGGACACGATGAACTTTGCGGCGGTACATAGTATCCGCGCCCATACC
ATCGTCTTCCCCTTCTCCAAAACCACGGAAGCATACAACGCTATGCTCGA
TGGCAAGTACCGCGTCGTCCTTGATATGACCAAGCAGTAATTATGCCTCA
ATAATACCGCACTTCTGCGGCGCGCGACGGTAGATCAGGCGGTCGGATGC
AAATAAAATCAAATCAGCGGTGGAAATAGGCACAGCGGATAGTTATGGTG
GATGGCGACGGCGGAGTATCCTACCGCGGCTGATCCTAACTAAGCCTTGG
TGCGCTGGGCGGTAACCACACAGAGAGAGATCACACGAGAATTTTGACAG
GGGCGATGGCCGCAGGGCTTGGTGGCGTTCCTGCAACGGCCTCCGGCGGC
GGATGACAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7834:1858..2967-

>mRNA_P-wetherbeei_contig7834.1.1 ID=mRNA_P-wetherbeei_contig7834.1.1|Name=mRNA_P-wetherbeei_contig7834.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig7834:1858..2967- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGATTTTCTAGGCGTAGTCGCCCGCTTCCACCTTTTATGGTGGAACC
TGACATGAAACTCTCTTTCATCTCCTCAGCGTCCCATATAATCCTCTCGG
TTCCCAATCTGCCCACGTCTCAGGACACGATGAACTTTGCGGCGGTACAT
AGTATCCGCGCCCATACCATCGTCTTCCCCTTCTCCAAAACCACGGAAGC
ATACAACGCTATGCTCGATGGCAAGTACCGCGTCGTCCTTGATATGACCA
AGCAGTAA
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