mRNA_P-wetherbeei_contig7825.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7825.1.1
Unique NamemRNA_P-wetherbeei_contig7825.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7825.1.1 vs. uniprot
Match: D8LBW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBW1_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.200e-18
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 1 
Query:   25 TWPEYRSLTPGDVLVTIEYCHACERHRMTFRHNADTFLHHAHAARDLLVPRFEGAGHLRLQVLLKPAAVDGAPQAWVATAGGGAXXXXXSSMSDG---RRRMGAFEVQVAALGAHGGTNVH--LVHSKLQSGCWPRL 420
            +WPE+  +  GDV+VT+E+CH C RHRMT RH+ + +L HA+A ++LL+        +RL V+LK + +    ++   + GG  XXXXX         RRR+GA EVQVAA   + G  +H  ++HSKL SG WPRL
Sbjct:  120 SWPEHAEMEKGDVVVTVEHCHGCHRHRMTTRHDPEVYLSHANAVKELLIESLRELP-VRLAVVLKKSPL----RSRTLSPGGDGXXXXXXXXXXXTLRRRRVGALEVQVAARHPNRGHLLHAQVIHSKLASGRWPRL 251
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BLAST of mRNA_P-wetherbeei_contig7825.1.1 vs. uniprot
Match: D7FVI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI6_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.030e-7
Identity = 40/111 (36.04%), Postives = 51/111 (45.95%), Query Frame = 1 
Query:   19 PQTWPEYRSLTPGDVLVTIEYCHACERHRMTFRHNADTFLHHAHAARDLLVPRFEGAG-HLRLQVLLKPAAVDGAPQAWVATAGGGAXXXXXSSMSDGRRRMGAFEVQVAA 348
            P  W E + +  GDVLVT+E+C AC RHRM+  HNAD ++  A A +        GAG H       +             T          +S S G  R+GAFEVQV A
Sbjct:   88 PLRWSEEKHMVAGDVLVTVEHCAACSRHRMSLHHNADAYIRRAAAMKTSAEQALIGAGRHPTAGGQGRGPGAGAQSMRLSQTTSVVTKPTTEASASGGVGRVGAFEVQVTA 198
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BLAST of mRNA_P-wetherbeei_contig7825.1.1 vs. uniprot
Match: A0A6H5KVB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.010e-5
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   25 TWPEYRSLTPGDVLVTIEYCHACERHRMTFRHN 123
            +WPE+  +  GDV+VT+E+CH C RHRMT RH+
Sbjct:   13 SWPEHAEMEKGDVVVTVEHCHGCHRHRMTTRHD 45
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7825.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBW1_ECTSI1.200e-1843.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVI6_ECTSI1.030e-736.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVB5_9PHAE1.010e-557.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7825contigP-wetherbeei_contig7825:359..793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBW1
Model size435
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.96e-19
EggNOG OGs2EUFD@1|root,2SWM4@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003480.1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.0173383-CDS-P-wetherbeei_contig7825:358..7931683187003.0173383-CDS-P-wetherbeei_contig7825:358..793Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7825 359..793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7825.1.1prot_P-wetherbeei_contig7825.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7825 359..793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7825.1.1

>prot_P-wetherbeei_contig7825.1.1 ID=prot_P-wetherbeei_contig7825.1.1|Name=mRNA_P-wetherbeei_contig7825.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
QRDHGRPQTWPEYRSLTPGDVLVTIEYCHACERHRMTFRHNADTFLHHAH
AARDLLVPRFEGAGHLRLQVLLKPAAVDGAPQAWVATAGGGAGSGGGSSM
SDGRRRMGAFEVQVAALGAHGGTNVHLVHSKLQSGCWPRLPLLNK
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mRNA from alignment at P-wetherbeei_contig7825:359..793-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7825.1.1 ID=mRNA_P-wetherbeei_contig7825.1.1|Name=mRNA_P-wetherbeei_contig7825.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig7825:359..793- (Phaeothamnion wetherbeei SAG_119_79)
CAGCGAGATCACGGCCGGCCGCAGACGTGGCCCGAATACCGTTCGCTGAC
GCCGGGCGACGTTCTCGTTACCATCGAGTACTGCCACGCCTGCGAGCGCC
ACCGCATGACCTTCCGCCACAACGCCGACACGTTCCTGCACCACGCTCAC
GCGGCGAGGGACCTTTTGGTGCCCCGCTTCGAGGGCGCCGGCCACCTGCG
GCTCCAAGTGCTCCTCAAGCCTGCGGCCGTGGACGGCGCACCGCAAGCAT
GGGTGGCGACGGCGGGAGGCGGAGCTGGCTCCGGCGGCGGCAGCAGTATG
AGTGACGGCAGGAGGCGGATGGGGGCGTTTGAGGTGCAGGTGGCCGCCCT
CGGCGCCCACGGGGGCACCAATGTGCATCTCGTTCACTCGAAGCTGCAGA
GCGGGTGCTGGCCGCGGCTGCCTCTGCTGAACAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7825:359..793-

>mRNA_P-wetherbeei_contig7825.1.1 ID=mRNA_P-wetherbeei_contig7825.1.1|Name=mRNA_P-wetherbeei_contig7825.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig7825:359..793- (Phaeothamnion wetherbeei SAG_119_79)
CAGCGAGATCACGGCCGGCCGCAGACGTGGCCCGAATACCGTTCGCTGAC
GCCGGGCGACGTTCTCGTTACCATCGAGTACTGCCACGCCTGCGAGCGCC
ACCGCATGACCTTCCGCCACAACGCCGACACGTTCCTGCACCACGCTCAC
GCGGCGAGGGACCTTTTGGTGCCCCGCTTCGAGGGCGCCGGCCACCTGCG
GCTCCAAGTGCTCCTCAAGCCTGCGGCCGTGGACGGCGCACCGCAAGCAT
GGGTGGCGACGGCGGGAGGCGGAGCTGGCTCCGGCGGCGGCAGCAGTATG
AGTGACGGCAGGAGGCGGATGGGGGCGTTTGAGGTGCAGGTGGCCGCCCT
CGGCGCCCACGGGGGCACCAATGTGCATCTCGTTCACTCGAAGCTGCAGA
GCGGGTGCTGGCCGCGGCTGCCTCTGCTGAACAAG
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