mRNA_P-wetherbeei_contig7774.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7774.1.1
Unique NamemRNA_P-wetherbeei_contig7774.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: S0F301_CHOCR (RNA-dependent DNA polymerase n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F301_CHOCR)

HSP 1 Score: 90.9 bits (224), Expect = 1.130e-18
Identity = 52/132 (39.39%), Postives = 78/132 (59.09%), Query Frame = 3
Query:    6 MRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFD-FEDCAALQLLKAIYGLKQAAYLWHLCLRSWLLSD-GFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLLAAGAPTSAIAGFK 395
            +R + AL A FD E+HQMDVVTA+LN  L + ++M  P G  D  +  +  +LLKAIYGLKQA   WH  +  +L+++ GF    +D C+++R   + +M         ++ ++VDDLL AG+   AI   K
Sbjct:  940 IRLLLALVAHFDLELHQMDVVTAFLNGDLHEEIYMEQPEGCIDKVKPDSVCKLLKAIYGLKQAHRQWHSKIDEFLITELGFNTTRSDPCLYIRRQGNVIM---------IIALYVDDLLLAGSDLEAILWMK 1062          
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 88.6 bits (218), Expect = 7.250e-18
Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 3
Query:    3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAAL-QLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLL 356
            ++R + ALA   D+E+HQMDV TA+L   LTD ++M+ P G    E+   + +L K++YGLKQ+A  W+  L S+L S G++ V AD C++++     V    GK  ++++ IHVDD+L
Sbjct:  925 SIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKS----VKLQNGKINFVILSIHVDDIL 1039          
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A094GNV2_9PEZI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Pseudogymnoascus sp. VKM F-4519 (FW-2642) TaxID=1420914 RepID=A0A094GNV2_9PEZI)

HSP 1 Score: 88.6 bits (218), Expect = 7.280e-18
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = 3
Query:    3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFED-CAALQLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLLAAGAPTSAIAGFK 395
            A+R + ALAA FD+E+ QMD VTA+LN+ L + +W+++P G   +E+   A +L K +YGLKQAA LW L +R  L   G++ + AD C++             KG Y  V  HVDD L  GA  +AI   K
Sbjct: 1031 AIRILIALAAHFDWEIEQMDAVTAFLNSRLDENVWIQLPTG---YENGTRACRLKKGLYGLKQAARLWALEVRKLLRELGYQMIPADECLYWHPK---------KGVY--VATHVDDFLVLGADINAIQELK 1148          
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A177TJ72_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177TJ72_9BASI)

HSP 1 Score: 88.2 bits (217), Expect = 9.480e-18
Identity = 54/134 (40.30%), Postives = 75/134 (55.97%), Query Frame = 3
Query:    6 MRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAALQLL----KAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLLAAGAPTSAIAGFK 395
            +R + ALAA FD+ VHQ+DVVTAYL   L+D+++MR PPG   FE   +  LL    +A+YGLKQ+   W+  LRS L+  GF     D  +F+ G  +         T L+V ++VDD+L        I  FK
Sbjct:  383 IRTLLALAAHFDWHVHQLDVVTAYLYGLLSDVVYMRQPPG---FEKVGSEHLLCRLRRALYGLKQSGREWYFTLRSALIELGFEQSTVDPAIFIFGTGA---------TALIVAVYVDDVLVLSKSIEDIKAFK 504          
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A5DZY5_LODEL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) TaxID=379508 RepID=A5DZY5_LODEL)

HSP 1 Score: 87.0 bits (214), Expect = 2.370e-17
Identity = 55/132 (41.67%), Postives = 78/132 (59.09%), Query Frame = 3
Query:    3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCA----ALQLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVR-GDVSPVMAAGGKGTYLVVGIHVDDLLAAGAPTSAI 383
            +MR + ALAA    E+HQMDV TA+LNAPL + ++M+   G   +ED A      +L K++YGLKQA   W+L +   LL+ GF+   A+ C+++R    S VM A          ++VDDLL AG+P  AI
Sbjct:  523 SMRIMLALAAHARMEIHQMDVTTAFLNAPLEEEIYMKQIEG---YEDPAFPDKVFKLNKSLYGLKQAPQAWNLQIHDVLLALGFQRNQAEYCLYIRRSSASTVMVA----------LYVDDLLIAGSPRRAI 641          
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A7D9ESN8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ESN8_PARCT)

HSP 1 Score: 86.7 bits (213), Expect = 3.420e-17
Identity = 47/119 (39.50%), Postives = 77/119 (64.71%), Query Frame = 3
Query:    3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAAL-QLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLL 356
            ++R + ALA E+D EVHQMDV TA+LN  +   ++M+ P G  + +    L +L K+IYGLKQ+A  W+  L  +L S G+R   AD C++V+     V   GG+ +++++G++VDD++
Sbjct:  956 SLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEGFVNPDKPDYLCKLQKSIYGLKQSARCWNDTLNGYLKSRGYRKSGADGCIYVKS----VKKDGGRISFVILGVYVDDII 1070          
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A7D9KZC9_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KZC9_PARCT)

HSP 1 Score: 85.9 bits (211), Expect = 4.180e-17
Identity = 47/118 (39.83%), Postives = 75/118 (63.56%), Query Frame = 3
Query:    6 MRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAAL-QLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLL 356
            +R + ALA E+D EVHQMDV TA+LN  +   ++M  P G  D +    L +L K+IYGLKQ+A  W+  L  +L S G+R   AD C++V+     V   GG+ +++++G+++DD++
Sbjct:   75 LRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMEQPEGFVDPDKPDYLCKLQKSIYGLKQSARCWNDTLDGYLKSRGYRKSGADGCIYVKS----VKKDGGRISFVILGVYMDDII 188          
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A7D9LDA1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LDA1_PARCT)

HSP 1 Score: 85.9 bits (211), Expect = 5.530e-17
Identity = 47/119 (39.50%), Postives = 77/119 (64.71%), Query Frame = 3
Query:    3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAAL-QLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLL 356
            ++R + ALA E+D EVHQMDV TA+LN  +   ++M+ P G  + +    L +L K+IYGLKQ+A  W+  L  +L S G+R   AD C++V+     V   GG+ +++++G++VDD++
Sbjct:  111 SLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEGFVNPDKPDYLCKLQKSIYGLKQSARCWNDTLDGYLKSRGYRKSGADGCIYVKS----VKKDGGRISFVILGVYVDDII 225          
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A7D9I9A2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I9A2_PARCT)

HSP 1 Score: 85.9 bits (211), Expect = 6.210e-17
Identity = 47/119 (39.50%), Postives = 77/119 (64.71%), Query Frame = 3
Query:    3 AMRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAAL-QLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLL 356
            ++R + ALA E+D EVHQMDV TA+LN  +   ++M+ P G  + +    L +L K+IYGLKQ+A  W+  L  +L S G+R   AD C++V+     V   GG+ +++++G++VDD++
Sbjct:  500 SLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEGFVNPDKPDYLCKLQKSIYGLKQSARCWNDTLDGYLKSRGYRKSGADGCIYVKS----VKKDGGRISFVILGVYVDDII 614          
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Match: A0A177T395_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177T395_9BASI)

HSP 1 Score: 84.7 bits (208), Expect = 1.590e-16
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 3
Query:    6 MRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAA----LQLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAAGGKGTYLVVGIHVDDLLAAGAPTSAIAGFK 395
            +R + ALAA F++ VHQ+DVVTAYL   L+D+++MR PPG   FE   +     +L +A+YGLKQ+   W+  LRS L+  GF     D  +F+ G  +         + LVV ++VDD+L        I  FK
Sbjct:  693 IRTLLALAAHFEWHVHQLDVVTAYLYGLLSDVVYMRQPPG---FEKVGSEHLYCRLRRALYGLKQSGREWYFTLRSALIELGFEQSTVDPAIFIFGSGA---------SALVVAVYVDDVLVLSKSIDDIEAFK 814          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7774.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S0F301_CHOCR1.130e-1839.39RNA-dependent DNA polymerase n=1 Tax=Chondrus cris... [more]
A0A7D9IUY0_PARCT7.250e-1840.34Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A094GNV2_9PEZI7.280e-1841.67Integrase catalytic domain-containing protein (Fra... [more]
A0A177TJ72_9BASI9.480e-1840.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5DZY5_LODEL2.370e-1741.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9ESN8_PARCT3.420e-1739.50Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9KZC9_PARCT4.180e-1739.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9LDA1_PARCT5.530e-1739.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9I9A2_PARCT6.210e-1739.50Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A177T395_9BASI1.590e-1638.81Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7774contigP-wetherbeei_contig7774:40..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog36914.XP_001526364.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size397
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.11e-18
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,3RTT4@4891|Saccharomycetes,47E39@766764|Debaryomycetaceae
DescriptionTransposable element
Cds size390
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187000.1300805-UTR-P-wetherbeei_contig7774:39..441683187000.1300805-UTR-P-wetherbeei_contig7774:39..44Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7774 40..44 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187000.1402383-CDS-P-wetherbeei_contig7774:44..4341683187000.1402383-CDS-P-wetherbeei_contig7774:44..434Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7774 45..434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7774.1.1prot_P-wetherbeei_contig7774.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7774 45..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7774.1.1

>prot_P-wetherbeei_contig7774.1.1 ID=prot_P-wetherbeei_contig7774.1.1|Name=mRNA_P-wetherbeei_contig7774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MRFIFALAAEFDFEVHQMDVVTAYLNAPLTDLLWMRVPPGPFDFEDCAAL
QLLKAIYGLKQAAYLWHLCLRSWLLSDGFRAVDADCCVFVRGDVSPVMAA
GGKGTYLVVGIHVDDLLAAGAPTSAIAGFK
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mRNA from alignment at P-wetherbeei_contig7774:40..434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7774.1.1 ID=mRNA_P-wetherbeei_contig7774.1.1|Name=mRNA_P-wetherbeei_contig7774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=395bp|location=Sequence derived from alignment at P-wetherbeei_contig7774:40..434+ (Phaeothamnion wetherbeei SAG_119_79)
ACGCGATGCGGTTCATCTTTGCGCTGGCGGCGGAGTTTGATTTCGAGGTG CACCAGATGGACGTGGTAACGGCATATCTCAATGCCCCACTCACGGACCT CTTGTGGATGCGCGTGCCGCCCGGGCCTTTCGACTTCGAGGACTGTGCGG CGCTGCAGTTGCTGAAGGCCATCTACGGCCTGAAGCAAGCGGCGTACCTT TGGCACCTCTGCCTGCGTTCTTGGCTTTTGAGCGACGGTTTTCGGGCAGT GGACGCTGACTGCTGTGTTTTCGTGCGCGGCGACGTGTCTCCGGTAATGG CGGCCGGCGGGAAGGGCACCTACCTCGTAGTAGGCATCCACGTTGACGAC CTTCTCGCCGCCGGCGCCCCAACATCGGCCATCGCGGGCTTTAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7774:40..434+

>mRNA_P-wetherbeei_contig7774.1.1 ID=mRNA_P-wetherbeei_contig7774.1.1|Name=mRNA_P-wetherbeei_contig7774.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig7774:40..434+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGTTCATCTTTGCGCTGGCGGCGGAGTTTGATTTCGAGGTGCACCA
GATGGACGTGGTAACGGCATATCTCAATGCCCCACTCACGGACCTCTTGT
GGATGCGCGTGCCGCCCGGGCCTTTCGACTTCGAGGACTGTGCGGCGCTG
CAGTTGCTGAAGGCCATCTACGGCCTGAAGCAAGCGGCGTACCTTTGGCA
CCTCTGCCTGCGTTCTTGGCTTTTGAGCGACGGTTTTCGGGCAGTGGACG
CTGACTGCTGTGTTTTCGTGCGCGGCGACGTGTCTCCGGTAATGGCGGCC
GGCGGGAAGGGCACCTACCTCGTAGTAGGCATCCACGTTGACGACCTTCT
CGCCGCCGGCGCCCCAACATCGGCCATCGCGGGCTTTAAG
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