mRNA_P-wetherbeei_contig7771.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7771.1.1
Unique NamemRNA_P-wetherbeei_contig7771.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7771.1.1 vs. uniprot
Match: A0A351T3S5_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T3S5_9PROT)

HSP 1 Score: 110 bits (274), Expect = 8.890e-30
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 MGQAQSVYQESDEPADGEACLQLAIAYSTGKGVPYDLVAAHKWFNVAAVKGQREALGWRAELAQEMAPAQIAEAQRQAREWLLSH 255
            MG+    +  + E  + EAC +L ++YSTG+GVPYDLVAAHKW NVAAV G REA+ WRAELA+EM+ A+IAEAQRQAREWL +H
Sbjct:    1 MGKFDRDFITAAERGEVEACFRLGVSYSTGRGVPYDLVAAHKWLNVAAVNGSREAVNWRAELAREMSAAEIAEAQRQAREWLATH 85          
BLAST of mRNA_P-wetherbeei_contig7771.1.1 vs. uniprot
Match: A0A6N6VGU3_9HYPH (Uncharacterized protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VGU3_9HYPH)

HSP 1 Score: 90.9 bits (224), Expect = 3.980e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   25 QESDEPADGEAC---LQLAIAYSTGKGVPYDLVAAHKWFNVAAVKGQREALGWRAELAQEMAPAQIAEAQRQAREWLLSH 255
            QES+  ++G  C    +L + YSTG GV  DLV AHKWFN+AA++G   A  +RAELA+EM PA++AEAQRQAREWL +H
Sbjct:   10 QESELASEGGKCDALYELGLIYSTGNGVEVDLVTAHKWFNLAAMRGSEAARSYRAELAREMGPAEVAEAQRQAREWLATH 89          
BLAST of mRNA_P-wetherbeei_contig7771.1.1 vs. uniprot
Match: A0A8I1RZD0_9PROT (Sel1 repeat family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A8I1RZD0_9PROT)

HSP 1 Score: 90.5 bits (223), Expect = 5.970e-22
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   16 SVYQESDEPADG--EACLQLAIAYSTGKGVPYDLVAAHKWFNVAAVKGQREALGWRAELAQEMAPAQIAEAQRQAREWL 246
            S+ Q   + A+G  +A   L +AYSTG+GV  DLVAAHKWFN+AAV+G   A GWR +LA EMAPAQIAEAQ+ AREWL
Sbjct:    8 SLAQYERDAAEGRADALYNLGLAYSTGQGVSVDLVAAHKWFNLAAVRGVEAAKGWRNQLAAEMAPAQIAEAQKLAREWL 86          
BLAST of mRNA_P-wetherbeei_contig7771.1.1 vs. uniprot
Match: UPI001CA69B05 (hypothetical protein n=1 Tax=Sphingomonas colocasiae TaxID=1848973 RepID=UPI001CA69B05)

HSP 1 Score: 88.6 bits (218), Expect = 4.170e-21
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 1
Query:   46 DGEACLQLAIAYSTGKG-VPYDLVAAHKWFNVAAVKGQREALGWRAELAQEMAPAQIAEAQRQAREWLLSHA 258
            D +ACL+L +AYS+G G    DL+ AHKWFN+AA++G  EA GWRAE+A EM+P +IAEAQRQAR WL+  A
Sbjct:   23 DPDACLELGMAYSSGSGNTIVDLIQAHKWFNLAALRGSHEAQGWRAEIAGEMSPREIAEAQRQARAWLIETA 94          
BLAST of mRNA_P-wetherbeei_contig7771.1.1 vs. uniprot
Match: A0A846N5M8_9PROT (Uncharacterized protein n=1 Tax=Rhizomicrobium palustre TaxID=189966 RepID=A0A846N5M8_9PROT)

HSP 1 Score: 87.4 bits (215), Expect = 9.830e-21
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   22 YQESDEPADGEACLQLAIAYSTGKGVPYDLVAAHKWFNVAAVKGQREALGWRAELAQEMAPAQIAEAQRQAREWL 246
            Y+   +    +A   L +AYSTG GV  D VAAHKWFN+AA++G  EA  WRA++A EM PAQIAEAQR AREWL
Sbjct:   12 YETEAQKGRPDALYNLGLAYSTGNGVGVDFVAAHKWFNLAALRGVEEAKSWRAQVASEMLPAQIAEAQRLAREWL 86          
BLAST of mRNA_P-wetherbeei_contig7771.1.1 vs. uniprot
Match: A0A1Q3IXM7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium 65-7 TaxID=1895712 RepID=A0A1Q3IXM7_9PROT)

HSP 1 Score: 86.7 bits (213), Expect = 1.780e-20
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   22 YQESDEPADGEACLQLAIAYSTGKGVPYDLVAAHKWFNVAAVKGQREALGWRAELAQEMAPAQIAEAQRQAREWL 246
            Y+        EA   L +AYSTG+GV  DL+AAHKWFN+AAV+G   A GWR +LA EM P+QIA+AQ+ AREWL
Sbjct:    9 YERDAREGRAEALYNLGLAYSTGQGVGVDLIAAHKWFNLAAVRGVEAAKGWRNQLAAEMQPSQIAQAQKLAREWL 83          
BLAST of mRNA_P-wetherbeei_contig7771.1.1 vs. uniprot
Match: A0A0Q7TLN8_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TLN8_9HYPH)

HSP 1 Score: 86.3 bits (212), Expect = 3.220e-20
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   16 SVYQESDEPADGEACLQLAIAYSTGKGVPYDLVAAHKWFNVAAVKGQREALGWRAELAQEMAPAQIAEAQRQAREWLLSH 255
            +V   + EPAD EAC  L + +S G GVP DL+ AHKWFN+AA++G REA   R E+A +MA ++I  AQR AR+WL  H
Sbjct:    5 TVIAANSEPADAEACFNLGMIHSAGAGVPVDLIEAHKWFNIAAMRGHREAAHLRREVADQMADSEIGCAQRAARDWLKMH 84          
BLAST of mRNA_P-wetherbeei_contig7771.1.1 vs. uniprot
Match: UPI0010BE30C7 (SEL1-like repeat protein n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BE30C7)

HSP 1 Score: 86.3 bits (212), Expect = 3.220e-20
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   16 SVYQESDEPADGEACLQLAIAYSTGKGVPYDLVAAHKWFNVAAVKGQREALGWRAELAQEMAPAQIAEAQRQAREWL 246
            +V  E  EP+D EAC +L +AYS+G GVP DL+ AHKWFN+AA++G  EA   R E+A++M+ + I  AQR AR+WL
Sbjct:    5 AVVAECREPSDAEACFELGMAYSSGAGVPVDLIEAHKWFNIAAMRGHCEAAQVRREIAEQMSDSDIGRAQRAARDWL 81          
BLAST of mRNA_P-wetherbeei_contig7771.1.1 vs. uniprot
Match: A0A3A0EMP4_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0EMP4_9PROT)

HSP 1 Score: 85.1 bits (209), Expect = 7.610e-20
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   37 EPADGEACLQLAIAYSTGKGVPYDLVAAHKWFNVAAVKGQREALGWRAELAQEMAPAQIAEAQRQAREWLLSH 255
            E    +A   L + Y+TG+GV  DLV AHKWFN+A+V+G R AL  RAELA++M+PA++AEAQRQAREWL  H
Sbjct:   17 EAGKADALYDLGLLYATGQGVDIDLVEAHKWFNLASVRGIRRALIDRAELARDMSPAEVAEAQRQAREWLSCH 89          
BLAST of mRNA_P-wetherbeei_contig7771.1.1 vs. uniprot
Match: A0A2D4VF82_9HYPH (Uncharacterized protein n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2D4VF82_9HYPH)

HSP 1 Score: 85.1 bits (209), Expect = 7.610e-20
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   49 GEACLQLAIAYSTGKGVPYDLVAAHKWFNVAAVKGQREALGWRAELAQEMAPAQIAEAQRQAREWLLS 252
            G+A L L + YSTG+ V  DLV AHKWFN+AA++G   A  +RAELA+EM+PA++AEAQRQAREW  S
Sbjct:   21 GDALLNLGLMYSTGRDVEVDLVTAHKWFNLAAMRGSVAARDYRAELAREMSPAEVAEAQRQAREWFAS 88          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7771.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351T3S5_9PROT8.890e-3063.53Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A6N6VGU3_9HYPH3.980e-2257.50Uncharacterized protein n=1 Tax=Parvibaculum sedim... [more]
A0A8I1RZD0_9PROT5.970e-2262.03Sel1 repeat family protein n=1 Tax=Alphaproteobact... [more]
UPI001CA69B054.170e-2161.11hypothetical protein n=1 Tax=Sphingomonas colocasi... [more]
A0A846N5M8_9PROT9.830e-2158.67Uncharacterized protein n=1 Tax=Rhizomicrobium pal... [more]
A0A1Q3IXM7_9PROT1.780e-2057.33Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A0Q7TLN8_9HYPH3.220e-2052.50Uncharacterized protein n=1 Tax=Pseudolabrys sp. R... [more]
UPI0010BE30C73.220e-2053.25SEL1-like repeat protein n=1 Tax=Pseudolabrys sp. ... [more]
A0A3A0EMP4_9PROT7.610e-2058.90Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A2D4VF82_9HYPH7.610e-2061.76Uncharacterized protein n=1 Tax=Parvibaculum sp. T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7771contigP-wetherbeei_contig7771:511..771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1333998.M2A_0678
Preferred nameMA20_36515
PFAMsSel1
Model size261
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07126
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.87e-19
EggNOG OGsCOG0790@1|root,COG0790@2|Bacteria,1N8SR@1224|Proteobacteria,2UFFQ@28211|Alphaproteobacteria
DescriptionCOG0790 FOG TPR repeat, SEL1 subfamily
Cds size261
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187000.0262442-CDS-P-wetherbeei_contig7771:510..7711683187000.0262442-CDS-P-wetherbeei_contig7771:510..771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7771 511..771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7771.1.1prot_P-wetherbeei_contig7771.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7771 511..771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7771.1.1

>prot_P-wetherbeei_contig7771.1.1 ID=prot_P-wetherbeei_contig7771.1.1|Name=mRNA_P-wetherbeei_contig7771.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MGQAQSVYQESDEPADGEACLQLAIAYSTGKGVPYDLVAAHKWFNVAAVK
GQREALGWRAELAQEMAPAQIAEAQRQAREWLLSHA*
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mRNA from alignment at P-wetherbeei_contig7771:511..771-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7771.1.1 ID=mRNA_P-wetherbeei_contig7771.1.1|Name=mRNA_P-wetherbeei_contig7771.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig7771:511..771- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTCAAGCACAGAGCGTTTATCAGGAATCAGACGAACCAGCAGACGG CGAGGCATGCCTTCAGCTCGCCATCGCCTATTCGACCGGCAAGGGGGTGC CGTACGATCTGGTCGCGGCGCATAAATGGTTCAATGTCGCGGCCGTCAAA GGCCAGCGTGAGGCATTGGGCTGGCGCGCAGAACTGGCGCAGGAAATGGC CCCGGCGCAGATCGCCGAAGCCCAGCGCCAGGCCCGCGAATGGCTGCTTT CCCACGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7771:511..771-

>mRNA_P-wetherbeei_contig7771.1.1 ID=mRNA_P-wetherbeei_contig7771.1.1|Name=mRNA_P-wetherbeei_contig7771.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig7771:511..771- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTCAAGCACAGAGCGTTTATCAGGAATCAGACGAACCAGCAGACGG
CGAGGCATGCCTTCAGCTCGCCATCGCCTATTCGACCGGCAAGGGGGTGC
CGTACGATCTGGTCGCGGCGCATAAATGGTTCAATGTCGCGGCCGTCAAA
GGCCAGCGTGAGGCATTGGGCTGGCGCGCAGAACTGGCGCAGGAAATGGC
CCCGGCGCAGATCGCCGAAGCCCAGCGCCAGGCCCGCGAATGGCTGCTTT
CCCACGCCTGA
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