mRNA_P-wetherbeei_contig7732.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7732.1.1
Unique NamemRNA_P-wetherbeei_contig7732.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7732.1.1 vs. uniprot
Match: A0A6H5L5D5_9PHAE (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D5_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.250e-58
Identity = 96/143 (67.13%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    1 REVGGKWELWSLKTLLEMKHGRGAVDELFYDIQCVVTRSLLSVQQAIIHDKHSFELYGYDVIIDDGLKPWLLEVNASPSLSADSPGDYALKTALLSDVLDVLDLEGRRPPAGARVGGFQLIWAGRPVDTRVPGGHSTALGSER 429
            +EVG KW+L SLK  L +KHG  AVDELFYD+QC++TRSLLSVQ++IIHDKH FELYGYDV++D  L+PWLLEVNASPSLSA++  D  LKT L+SDVLDV+DLEGR      RVG F+LIWA  P DTR  GG+ST LG+E+
Sbjct:  131 KEVGCKWDLQSLKMFLTLKHGARAVDELFYDMQCLITRSLLSVQKSIIHDKHCFELYGYDVLVDADLEPWLLEVNASPSLSAENAADKKLKTQLISDVLDVVDLEGRLEGDEQRVGCFRLIWANGPTDTRAAGGYSTFLGTEK 273          
BLAST of mRNA_P-wetherbeei_contig7732.1.1 vs. uniprot
Match: D8LLT6_ECTSI (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT6_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 2.630e-58
Identity = 97/143 (67.83%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    1 REVGGKWELWSLKTLLEMKHGRGAVDELFYDIQCVVTRSLLSVQQAIIHDKHSFELYGYDVIIDDGLKPWLLEVNASPSLSADSPGDYALKTALLSDVLDVLDLEGRRPPAGARVGGFQLIWAGRPVDTRVPGGHSTALGSER 429
            +EVG KW+L SLK  L +KHG  AVDELFYD+QC++TRSLLSVQ++IIHDKH FELYGYDV++D  LKPWLLEVNASPSLSA++  D  LKT L+SDVLDV+DLEGR      RVG F+LIWA  P DTR  GG+ST LG+E+
Sbjct:  251 KEVGCKWDLQSLKMFLTLKHGARAVDELFYDMQCLITRSLLSVQKSIIHDKHCFELYGYDVLVDADLKPWLLEVNASPSLSAENAADKKLKTQLISDVLDVVDLEGRLEGDEQRVGSFRLIWANGPTDTRAAGGYSTFLGTEK 393          
BLAST of mRNA_P-wetherbeei_contig7732.1.1 vs. uniprot
Match: A0A2D4CIS2_PYTIN (Tubulin--tyrosine ligase-like protein 9 (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIS2_PYTIN)

HSP 1 Score: 164 bits (414), Expect = 2.350e-44
Identity = 82/141 (58.16%), Postives = 101/141 (71.63%), Query Frame = 1
Query:    1 REVGGKWELWSLKTLLEMKHGRGAVDELFYDIQCVVTRSLLSVQQAIIHDKHSFELYGYDVIIDDGLKPWLLEVNASPSLSADSPGDYALKTALLSDVLDVLDLEGRRPPAGARVGGFQLIWAG-RPVDTRVPGGHSTALG 420
            R +G KW L  LK  L  KHG  AVD+LF+DIQ V+TRSLL+VQQ +I DKH FELYGYDV++D  LKPWLLEVNASPSL+AD+  D ALK +++   LDV+DLEG+R      VGGF LI+   +PV    P G+ +ALG
Sbjct:  251 RTMGCKWLLRDLKLFLVSKHGLAAVDQLFHDIQMVITRSLLAVQQVVIQDKHCFELYGYDVLVDSALKPWLLEVNASPSLTADTEQDCALKRSVVQHTLDVVDLEGKRSGTERHVGGFDLIYFNXQPVXNAXPNGYQSALG 391          
BLAST of mRNA_P-wetherbeei_contig7732.1.1 vs. uniprot
Match: A0A5D6XG91_9STRA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XG91_9STRA)

HSP 1 Score: 162 bits (411), Expect = 4.130e-44
Identity = 82/139 (58.99%), Postives = 98/139 (70.50%), Query Frame = 1
Query:    7 VGGKWELWSLKTLLEMKHGRGAVDELFYDIQCVVTRSLLSVQQAIIHDKHSFELYGYDVIIDDGLKPWLLEVNASPSLSADSPGDYALKTALLSDVLDVLDLEGRRPPAGARVGGFQLIWAGR-PVDTRVPGGHSTALG 420
            VG KW L SLK  L  KHG   VD LF+DIQ ++TRSLL+VQQ +I DKH FELYGYDV+ID  LKPWLLEVNASPSL+AD+  DY LK  ++   LDV+D+EGRR  A   VGGF L+W+   PV    P G+ + LG
Sbjct:  234 VGCKWPLHSLKMFLVGKHGVDTVDRLFHDIQQLITRSLLAVQQVVIQDKHCFELYGYDVLIDSALKPWLLEVNASPSLTADTEADYHLKANVVQHTLDVVDVEGRRSGAERHVGGFDLLWSNNSPVPGAHPSGYRSYLG 372          
BLAST of mRNA_P-wetherbeei_contig7732.1.1 vs. uniprot
Match: A0A835ZCT8_9STRA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 6.380e-44
Identity = 82/143 (57.34%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 REVGGKWELWSLKTLLEMKHGRGAVDELFYDIQCVVTRSLLSVQQAIIHDKHSFELYGYDVIIDDGLKPWLLEVNASPSLSADSPGDYALKTALLSDVLDVLDLEGRRPPAGARVGGFQLIW-AGRPVDTRVPGGHSTALGSE 426
            R VG K  L +LK LL  +HG  AVDELF+D++C+V R+LLSVQ AI+ D+H FELYG DV++DD LKPWL+E NASPSLSA+   D ALK  L+SD LDV+D+EG R      VGGF+LIW +  PV+  V G   T LGS+
Sbjct:  224 RGVGCKLALHALKLLLTARHGAAAVDELFHDMECLVVRALLSVQAAIVQDRHCFELYGLDVVVDDALKPWLIEANASPSLSAEHATDAALKRQLVSDALDVVDMEGARDGTELEVGGFRLIWDSNGPVEQPVAGSFRTWLGSQ 366          
BLAST of mRNA_P-wetherbeei_contig7732.1.1 vs. uniprot
Match: A0A7S3DBK5_9EUKA (Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DBK5_9EUKA)

HSP 1 Score: 159 bits (402), Expect = 1.360e-43
Identity = 78/138 (56.52%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    7 VGGKWELWSLKTLLEMKHGRGAVDELFYDIQCVVTRSLLSVQQAIIHDKHSFELYGYDVIIDDGLKPWLLEVNASPSLSADSPGDYALKTALLSDVLDVLDLEGRRPPAGARVGGFQLIWAGRPVDTRVPGGHSTALG 420
             G KW L SLK  L  KHG  AV+E FY+IQ ++ RSLLSVQ+ II+DKHSFE+YGYD +ID+ LKPWL+EVNASPSL+AD+P DY LK  +L D + +LDLE +      +VGGF LI+ G PV +   G H++ LG
Sbjct:  143 TGCKWSLRSLKLYLMSKHGPDAVNESFYEIQQMIIRSLLSVQKVIINDKHSFEVYGYDALIDEDLKPWLIEVNASPSLTADTPADYQLKFGMLDDAMTLLDLEHKLTGKEDQVGGFDLIYQGGPVRSEKQGSHTSFLG 280          
BLAST of mRNA_P-wetherbeei_contig7732.1.1 vs. uniprot
Match: K3WCE0_GLOUD (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCE0_GLOUD)

HSP 1 Score: 162 bits (410), Expect = 1.480e-43
Identity = 80/140 (57.14%), Postives = 96/140 (68.57%), Query Frame = 1
Query:    1 REVGGKWELWSLKTLLEMKHGRGAVDELFYDIQCVVTRSLLSVQQAIIHDKHSFELYGYDVIIDDGLKPWLLEVNASPSLSADSPGDYALKTALLSDVLDVLDLEGRRPPAGARVGGFQLIWAGRPVDTRVPGGHSTALG 420
            + +G KW L +LK  L  KH    VD LFYDIQ ++TRSLLSVQQ +I DKH FELYGYDV+ID  LKPWLLEVNASPSL+AD+  DY LK  ++   LDV+D+E +R      VGGF LIW   PV    P G+S+ LG
Sbjct:  275 KSLGCKWPLHNLKMFLIGKHDIATVDRLFYDIQMLITRSLLSVQQVVIQDKHCFELYGYDVLIDSDLKPWLLEVNASPSLTADTEQDYQLKVNVVQHTLDVIDMESKRSGKELHVGGFDLIWNNGPVPHAHPNGYSSYLG 414          
BLAST of mRNA_P-wetherbeei_contig7732.1.1 vs. uniprot
Match: A0A7S3G4H5_9EUKA (Tubulin--tyrosine ligase-like protein 9 n=6 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G4H5_9EUKA)

HSP 1 Score: 159 bits (402), Expect = 1.600e-42
Identity = 78/138 (56.52%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    7 VGGKWELWSLKTLLEMKHGRGAVDELFYDIQCVVTRSLLSVQQAIIHDKHSFELYGYDVIIDDGLKPWLLEVNASPSLSADSPGDYALKTALLSDVLDVLDLEGRRPPAGARVGGFQLIWAGRPVDTRVPGGHSTALG 420
             G KW L SLK  L  KHG  AV+E FY+IQ ++ RSLLSVQ+ II+DKHSFE+YGYD +ID+ LKPWL+EVNASPSL+AD+P DY LK  +L D + +LDLE +      +VGGF LI+ G PV +   G H++ LG
Sbjct:  251 TGCKWSLRSLKLYLMSKHGPDAVNESFYEIQQMIIRSLLSVQKVIINDKHSFEVYGYDALIDEDLKPWLIEVNASPSLTADTPADYQLKFGMLDDAMTLLDLEHKLTGKEDQVGGFDLIYQGGPVRSEKQGSHTSFLG 388          
BLAST of mRNA_P-wetherbeei_contig7732.1.1 vs. uniprot
Match: A0A662WUS0_9STRA (Tubulin--tyrosine ligase-like protein 9 (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUS0_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.960e-42
Identity = 80/139 (57.55%), Postives = 97/139 (69.78%), Query Frame = 1
Query:    7 VGGKWELWSLKTLLEMKHGRGAVDELFYDIQCVVTRSLLSVQQAIIHDKHSFELYGYDVIIDDGLKPWLLEVNASPSLSADSPGDYALKTALLSDVLDVLDLEGRRPPAGARVGGFQLIWA-GRPVDTRVPGGHSTALG 420
            +G KW L SLK  L  KHG+ AVD LF+ IQ ++TRSLL+VQQ II D+H FELYGYDV++D  LKPWL+EVNASPSL+ D+  D ALK  L+   LDVLD+E RR      VGGF LIW+ G  V    P G+S+ LG
Sbjct:  260 LGCKWPLHSLKLFLISKHGQEAVDRLFHGIQTLITRSLLAVQQVIIQDRHCFELYGYDVLVDSALKPWLIEVNASPSLTGDTDADCALKANLVQHTLDVLDMEHRREGGELHVGGFDLIWSNGNAVPQAKPDGYSSYLG 398          
BLAST of mRNA_P-wetherbeei_contig7732.1.1 vs. uniprot
Match: A0A6A3S929_9STRA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3S929_9STRA)

HSP 1 Score: 157 bits (397), Expect = 8.630e-42
Identity = 79/139 (56.83%), Postives = 97/139 (69.78%), Query Frame = 1
Query:    7 VGGKWELWSLKTLLEMKHGRGAVDELFYDIQCVVTRSLLSVQQAIIHDKHSFELYGYDVIIDDGLKPWLLEVNASPSLSADSPGDYALKTALLSDVLDVLDLEGRRPPAGARVGGFQLIWA-GRPVDTRVPGGHSTALG 420
            +G KW L SLK  L  KHG+ AVD LF+ IQ ++TRSLL+VQ  II D+H FELYGYDV+ID  LKPWL+EVNASPSL+AD+  DY+LK  L+   L+V+DLE RR      +GGF LIW  G  V    P G+S+ LG
Sbjct:  264 LGCKWPLHSLKMFLISKHGQEAVDRLFFSIQSLITRSLLAVQPTIIQDRHCFELYGYDVLIDSALKPWLIEVNASPSLTADTDADYSLKANLVQHTLEVVDLERRREGDELHIGGFDLIWNNGSAVPNAKPNGYSSYLG 402          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7732.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5D5_9PHAE1.250e-5867.13Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ec... [more]
D8LLT6_ECTSI2.630e-5867.83Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ec... [more]
A0A2D4CIS2_PYTIN2.350e-4458.16Tubulin--tyrosine ligase-like protein 9 (Fragment)... [more]
A0A5D6XG91_9STRA4.130e-4458.99Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Py... [more]
A0A835ZCT8_9STRA6.380e-4457.34Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Tr... [more]
A0A7S3DBK5_9EUKA1.360e-4356.52Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Pa... [more]
K3WCE0_GLOUD1.480e-4357.14Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Gl... [more]
A0A7S3G4H5_9EUKA1.600e-4256.52Tubulin--tyrosine ligase-like protein 9 n=6 Tax=Pa... [more]
A0A662WUS0_9STRA2.960e-4257.55Tubulin--tyrosine ligase-like protein 9 (Fragment)... [more]
A0A6A3S929_9STRA8.630e-4256.83Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7732contigP-wetherbeei_contig7732:1525..2771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLT6
Preferred nameTTLL9
PFAMsTTL
Model size818
Max annot lvl2759|Eukaryota
KEGG koko:K16603
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.13e-53
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota
Descriptionprotein polyglycylation
Cds size408
COG categoryS
BRITEko00000,ko01000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.855469-UTR-P-wetherbeei_contig7732:1524..18831683186997.855469-UTR-P-wetherbeei_contig7732:1524..1883Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7732 1525..1883 -
1683186997.896326-UTR-P-wetherbeei_contig7732:2720..27711683186997.896326-UTR-P-wetherbeei_contig7732:2720..2771Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7732 2721..2771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.8675616-CDS-P-wetherbeei_contig7732:1883..20121683186997.8675616-CDS-P-wetherbeei_contig7732:1883..2012Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7732 1884..2012 -
1683186997.8770103-CDS-P-wetherbeei_contig7732:2078..22501683186997.8770103-CDS-P-wetherbeei_contig7732:2078..2250Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7732 2079..2250 -
1683186997.886594-CDS-P-wetherbeei_contig7732:2613..27201683186997.886594-CDS-P-wetherbeei_contig7732:2613..2720Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7732 2614..2720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7732.1.1prot_P-wetherbeei_contig7732.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7732 1884..2720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7732.1.1

>prot_P-wetherbeei_contig7732.1.1 ID=prot_P-wetherbeei_contig7732.1.1|Name=mRNA_P-wetherbeei_contig7732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MKHGRGAVDELFYDIQCVVTRSLLSVQQAIIHDKHSFELYGYDVIIDDGL
KPWLLEVNASPSLSADSPGDYALKTALLSDVLDVLDLEGRRPPAGARVGG
FQLIWAGRPVDTRVPGGHSTALGSERRPRTCKRRP*
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mRNA from alignment at P-wetherbeei_contig7732:1525..2771-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7732.1.1 ID=mRNA_P-wetherbeei_contig7732.1.1|Name=mRNA_P-wetherbeei_contig7732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1247bp|location=Sequence derived from alignment at P-wetherbeei_contig7732:1525..2771- (Phaeothamnion wetherbeei SAG_119_79)
CGCGAGGTGGGCGGCAAATGGGAGCTTTGGAGCCTGAAGACGCTACTGGA GATGAAGCACGGGCGGGGCGCCGTGGACGAGCTCTTCTACGACATTCAAT GCGTCGTGACGCGATCCCTGCTCAGCGTGCAGCAGGCCATCATCCATGAC AAGCACAGGTATGTCTGGGGCCGGCTGACAACGGCACCGTTCCGTCGTTT GCCTGACGCAGGCAGTCGGACGGAAGTTGCCATCGCTTTTTTCCAGCTTG CTTTCTTGCAAGATTGGTTACTGTGGATGGGGTTCTTCTTTTTTCCCTAA ATCACAACCAATGGTGTTCCCTGAGTTTGCCTATCTTGTTACTTTAGTTC AACAGGCAGCACTTTTGCTGCCATCGCTGGCATCGCTGCCATCGCCGTTT TAGCCACCGCTGCTACCGCAACTGGTCAATTGCTGCCTCTGCGCCGCCTT CACTGCCAACATGGCGTTTAACTCCCCAATCCTCTTCTCCCACCACTACT GGCGAAAAACACAACGCACAGCTTTGAGCTGTACGGCTACGACGTCATCA TCGACGACGGTCTCAAGCCGTGGCTCCTCGAGGTCAATGCGTCGCCGTCG CTCTCCGCCGACTCCCCTGGCGATTATGCCCTCAAGACCGCACTGCTCTC CGATGTGCTCGACGTCCTCGACCTCGAGGGTCGCCGCCCGCCCGTCTTTG CCGCCGGCGGCGCTTACGGCGGCGGCGGGAATGGTGGTAGTGGCGGCGGC GAGGCGGAGGCCGGGGCGCGGGTGGGCGGGTTTCAGCTGATTTGGGCGGG CAGGCCGGTGGACACGCGGGTGCCGGGGGGCCATTCCACGGCGCTAGGAA GCGAGCGGCGGCCTCGCACATGTAAAAGGCGGCCTTAGATAAATGGATTG ATCTACGGCGGGTGTGGTCGAAGTCAACGTTGTTGTCCTAGGGCGGCGAA GCGCGCGCAGTACTGTCCCGACACTACCAAAACTTGGCCCGTGAGACAGT GGTTGCTACGCTGTGATCTACTGCGATCATATTTTAGGGCAAGCCGATCG CTTCGCTCGGCTTTTGCCAGCGGTACACATCACGCCAGCGCGGCCGTCGC CGGCAGCGCGAAGCTAGCCAGCCCCTTGGCCGCCGAGAGCGGCGGCAGGC TGCCGCGCTTGCAAAACCTGCCGGCTGCAGCTTGACTTCAAATTTACATC TCTTGTACGTTGTGCGGTCAAAGGCAGTGGTAAGCATGGATCCAATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7732:1525..2771-

>mRNA_P-wetherbeei_contig7732.1.1 ID=mRNA_P-wetherbeei_contig7732.1.1|Name=mRNA_P-wetherbeei_contig7732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig7732:1525..2771- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCACGGGCGGGGCGCCGTGGACGAGCTCTTCTACGACATTCAATG
CGTCGTGACGCGATCCCTGCTCAGCGTGCAGCAGGCCATCATCCATGACA
AGCACAGCTTTGAGCTGTACGGCTACGACGTCATCATCGACGACGGTCTC
AAGCCGTGGCTCCTCGAGGTCAATGCGTCGCCGTCGCTCTCCGCCGACTC
CCCTGGCGATTATGCCCTCAAGACCGCACTGCTCTCCGATGTGCTCGACG
TCCTCGACCTCGAGGGTCGCCGCCCGCCCGCCGGGGCGCGGGTGGGCGGG
TTTCAGCTGATTTGGGCGGGCAGGCCGGTGGACACGCGGGTGCCGGGGGG
CCATTCCACGGCGCTAGGAAGCGAGCGGCGGCCTCGCACATGTAAAAGGC
GGCCTTAG
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