mRNA_P-wetherbeei_contig7670.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7670.1.1
Unique NamemRNA_P-wetherbeei_contig7670.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7670.1.1 vs. uniprot
Match: A0A0G4H3Z3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H3Z3_9ALVE)

HSP 1 Score: 64.3 bits (155), Expect = 9.360e-12
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 YEGTWKSDKRDGRGVMVYLGRSGQR-DERYEGDWYEGKMHGQGKYAYSDG 147
            Y G W+ DKR G+G + Y+   G   +E+YEGDW  GKMHG GKY Y+DG
Sbjct:   15 YTGEWRDDKRRGKGTVTYVSAKGSVVEEKYEGDWVNGKMHGHGKYIYADG 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7670.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0G4H3Z3_9ALVE9.360e-1254.00Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7670contigP-wetherbeei_contig7670:879..1598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog244447.XP_008323297.1
Preferred nameALS2
PFAMsMORN,RCC1,RhoGEF,VPS9
Model size231
Max annot lvl33208|Metazoa
KEGG koko:K04575
KEGG Pathwayko05014,map05014
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0001662,GO:0001701,GO:0001726,GO:0001881,GO:0001932,GO:0001934,GO:0002209,GO:0002252,GO:0002376,GO:0003674,GO:0005085,GO:0005088,GO:0005089,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005769,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006582,GO:0006725,GO:0006810,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007409,GO:0007528,GO:0007610,GO:0007626,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009653,GO:0009790,GO:0009792,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010256,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0012505,GO:0014069,GO:0015630,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016601,GO:0017016,GO:0017048,GO:0017112,GO:0017137,GO:0018958,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019748,GO:0019887,GO:0019899,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030027,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030295,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030676,GO:0030695,GO:0031175,GO:0031252,GO:0031267,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031982,GO:0032147,GO:0032268,GO:0032270,GO:0032279,GO:0032483,GO:0032501,GO:0032502,GO:0032535,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033267,GO:0033555,GO:0033674,GO:0035006,GO:0035010,GO:0035011,GO:0035020,GO:0035022,GO:0035249,GO:0035556,GO:0036477,GO:0042325,GO:0042327,GO:0042440,GO:0042596,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043085,GO:0043087,GO:0043112,GO:0043170,GO:0043197,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043539,GO:0043547,GO:0043549,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044260,GO:0044297,GO:0044309,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045087,GO:0045202,GO:0045859,GO:0045860,GO:0045937,GO:0046578,GO:0046579,GO:0046907,GO:0046983,GO:0048365,GO:0048468,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050808,GO:0050896,GO:0051020,GO:0051036,GO:0051056,GO:0051057,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060589,GO:0061564,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0090066,GO:0097447,GO:0097458,GO:0097708,GO:0098772,GO:0098794,GO:0098916,GO:0098984,GO:0099536,GO:0099537,GO:0099572,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0150034,GO:1901360,GO:1901615,GO:1902531,GO:1902533
Exons3
Evalue4.74e-05
EggNOG OGsCOG4642@1|root,COG5184@1|root,KOG0231@2759|Eukaryota,KOG1426@2759|Eukaryota,38G25@33154|Opisthokonta,3BBF7@33208|Metazoa,3CZP7@33213|Bilateria,486FM@7711|Chordata,494TM@7742|Vertebrata,49QN3@7898|Actinopterygii
DescriptionAmyotrophic lateral sclerosis
Cds size231
COG categoryT
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186994.116168-CDS-P-wetherbeei_contig7670:878..10011683186994.116168-CDS-P-wetherbeei_contig7670:878..1001Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7670 879..1001 +
1683186994.1390285-CDS-P-wetherbeei_contig7670:1248..12931683186994.1390285-CDS-P-wetherbeei_contig7670:1248..1293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7670 1249..1293 +
1683186994.1529198-CDS-P-wetherbeei_contig7670:1535..15981683186994.1529198-CDS-P-wetherbeei_contig7670:1535..1598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7670 1536..1598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7670.1.1prot_P-wetherbeei_contig7670.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7670 879..1598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7670.1.1

>prot_P-wetherbeei_contig7670.1.1 ID=prot_P-wetherbeei_contig7670.1.1|Name=mRNA_P-wetherbeei_contig7670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
YEGTWKSDKRDGRGVMVYLGRSGQRDERYEGDWYEGKMHGQGKYAYSDGS
SYDGQWVDSKMHGTGVFLFGNGNQYQG
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mRNA from alignment at P-wetherbeei_contig7670:879..1598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7670.1.1 ID=mRNA_P-wetherbeei_contig7670.1.1|Name=mRNA_P-wetherbeei_contig7670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig7670:879..1598+ (Phaeothamnion wetherbeei SAG_119_79)
TACGAGGGGACGTGGAAGTCGGATAAGCGGGACGGGCGCGGCGTGATGGT
GTACCTTGGGCGGTCGGGGCAGCGTGACGAGCGCTACGAGGGCGACTGGT
ACGAGGGGAAAATGCATGGGCAGGTGAGAGTGGCATTTTCTTCCATTCTC
CTTTTATAACTTCTTGTCAGAATTCCCCTTTTCCCCCTTTTCTGGCGCGT
CTTTTTCCCTTCAAGGTGTTCTCCTTTCCGCCCGTCGGGATTTACCTCTG
TTGGGCCGTGTTGGCTTCCTCAGATCTATGTTTTGGATTCTGGATTCCTT
CCTCAAACATGGGGGCGGTCACATTCTATCCTCATGTCCGCCGCGCTCTG
CCGCTCTGCATGGTCTGCAGGGCAAGTACGCGTACTCGGACGGGAGTTCA
TACGACGGACAGTGGGTGAGCTATTTCGTGCGGTCGGCTACTTTGATAAT
ACATCGTTCTCTTTCGGATATTCACTCTGATTCCGGATTGCCACCCTCTC
TGCGATCCTCTCCTTTCCTGAGCATCGGCTCTAGCCACCGCGTGTATCGC
GGAGTCCGATAGCAGCTCTTAAAAGAATTATGGTGGCGAGATCTCCATCC
TGCGGCTGAAAATTAACAGTGCTCGCAACCCTGAAATCATTGCTGAAATC
CGTACAGGTGGACTCGAAAATGCACGGAACGGGAGTCTTTTTATTCGGCA
ACGGGAACCAATATCAAGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7670:879..1598+

>mRNA_P-wetherbeei_contig7670.1.1 ID=mRNA_P-wetherbeei_contig7670.1.1|Name=mRNA_P-wetherbeei_contig7670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig7670:879..1598+ (Phaeothamnion wetherbeei SAG_119_79)
TACGAGGGGACGTGGAAGTCGGATAAGCGGGACGGGCGCGGCGTGATGGT
GTACCTTGGGCGGTCGGGGCAGCGTGACGAGCGCTACGAGGGCGACTGGT
ACGAGGGGAAAATGCATGGGCAGGGCAAGTACGCGTACTCGGACGGGAGT
TCATACGACGGACAGTGGGTGGACTCGAAAATGCACGGAACGGGAGTCTT
TTTATTCGGCAACGGGAACCAATATCAAGGT
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