mRNA_P-wetherbeei_contig7660.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7660.1.1
Unique NamemRNA_P-wetherbeei_contig7660.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7660.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7660contigP-wetherbeei_contig7660:1203..2798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1597
Hectar predicted targeting categoryother localisation
Exons1
Cds size1494
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.7054055-UTR-P-wetherbeei_contig7660:1202..13041683186993.7054055-UTR-P-wetherbeei_contig7660:1202..1304Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7660 1203..1304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.7229438-CDS-P-wetherbeei_contig7660:1304..27981683186993.7229438-CDS-P-wetherbeei_contig7660:1304..2798Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7660 1305..2798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7660.1.1prot_P-wetherbeei_contig7660.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7660 1305..2798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7660.1.1

>prot_P-wetherbeei_contig7660.1.1 ID=prot_P-wetherbeei_contig7660.1.1|Name=mRNA_P-wetherbeei_contig7660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=498bp
MNGASSHASRSTSVEKLQDTFVKSLRSGDIPTSFTLFGSKYKAVLVRQYH
ALYAKAGHEKEKADIFCDFSDRSRPALLIPGCRCGPTNQSDRTTVTYHHS
FIALDNIANAVTSGGRRNDSVPAGSGAWGKPRRGRIRDMLKDRQVISYES
DPAVVARAYDHGANLNICADEDKMAAWAAAQRQRRLSLPALAPRKANAAG
GAGAGTAGDQETLSSFDGSELAAPARSTADRPPLRRAALVPEGTYACSGV
GQAAAATAAAASTTWRPSAPPSPPPGCPQPSWGRSAGQAKRHGAGLPWGS
GLGRGLSRLLPFRSDTPHRAAGVGKAAAAVAAAAFGSPGAGAFFDDRETM
DLDDLDDEDYPVHFGSPATSNVSSGGSDGSSKGASAIVGGGSGGNGGGSI
GGSGSCSCGNGGDGSSSSPAAAEVPVTRCKLELTSGGGGQSAAESPLARL
ELEFSDDEDEEWELDYGVGPAPEPPAPTATLPATAAASAGPTSSPPPP
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mRNA from alignment at P-wetherbeei_contig7660:1203..2798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7660.1.1 ID=mRNA_P-wetherbeei_contig7660.1.1|Name=mRNA_P-wetherbeei_contig7660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1596bp|location=Sequence derived from alignment at P-wetherbeei_contig7660:1203..2798+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTTTGGCGCTCGTTGCATCGCACCCCTCGTTGCAACAATAAAAGACTG
CTGTTAGAGGCACTCCGCTCCTTATTCTCTCACTTTTTCAATTTTTAGTA
GCATGAATGGAGCTTCCTCCCACGCTTCCCGCTCAACTTCCGTTGAGAAG
CTGCAAGATACTTTTGTGAAATCGCTTAGATCTGGGGACATACCAACGTC
TTTCACGCTTTTCGGTTCCAAGTACAAAGCAGTCCTCGTCCGACAATACC
ATGCATTATACGCAAAAGCTGGACACGAAAAGGAAAAGGCCGACATCTTC
TGTGACTTTTCTGACCGCAGCCGACCAGCGTTGCTCATTCCGGGCTGCCG
CTGCGGTCCCACGAACCAGAGTGACCGTACTACCGTCACCTACCATCACT
CGTTTATTGCGCTGGACAACATCGCCAACGCCGTGACGAGTGGCGGAAGG
AGGAATGACAGTGTCCCTGCCGGCAGCGGTGCCTGGGGGAAGCCGCGCAG
GGGAAGAATACGCGACATGCTCAAGGACCGGCAGGTCATTTCGTACGAGA
GCGATCCCGCCGTAGTGGCAAGAGCCTATGACCACGGCGCCAACCTGAAC
ATTTGCGCCGACGAGGACAAGATGGCGGCCTGGGCGGCAGCGCAGCGGCA
GCGCCGCTTGTCGCTGCCAGCACTGGCGCCGCGGAAGGCCAACGCGGCCG
GAGGTGCTGGCGCCGGAACCGCAGGAGACCAGGAGACACTGTCGTCGTTC
GATGGCAGCGAGCTCGCCGCTCCGGCGCGGTCGACAGCAGATCGGCCGCC
GCTCCGACGGGCAGCACTCGTTCCTGAGGGCACCTACGCGTGCTCGGGCG
TCGGACAGGCTGCTGCTGCGACGGCGGCGGCCGCCTCAACGACATGGCGG
CCATCTGCGCCGCCGTCGCCTCCGCCCGGCTGCCCTCAGCCGAGTTGGGG
CCGCTCTGCCGGGCAAGCGAAGCGTCACGGGGCTGGCTTGCCCTGGGGGA
GCGGCCTTGGAAGGGGGCTGTCGCGACTGCTGCCGTTCCGCTCCGACACG
CCGCACCGGGCGGCGGGGGTGGGGAAGGCAGCGGCCGCGGTCGCAGCAGC
AGCGTTCGGGTCGCCAGGTGCGGGTGCTTTTTTCGACGACCGAGAGACGA
TGGATCTGGATGATCTGGACGACGAAGACTATCCCGTCCATTTTGGCAGC
CCCGCGACGAGCAACGTCAGCAGCGGTGGCAGCGACGGCAGCAGCAAAGG
GGCATCTGCAATCGTCGGCGGCGGCAGCGGCGGCAACGGCGGCGGCAGCA
TTGGTGGCAGCGGCAGCTGCAGCTGCGGTAACGGCGGTGACGGCAGCAGC
AGCAGCCCCGCAGCCGCCGAAGTTCCAGTCACACGTTGCAAGCTGGAACT
GACCAGCGGCGGCGGCGGTCAATCAGCTGCGGAATCGCCGCTGGCGAGGC
TCGAGCTTGAGTTCAGCGACGACGAAGACGAAGAGTGGGAGCTCGATTAC
GGCGTCGGCCCCGCGCCGGAACCGCCGGCACCAACGGCGACGCTGCCTGC
GACGGCGGCGGCATCTGCCGGGCCGACGTCATCGCCGCCGCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7660:1203..2798+

>mRNA_P-wetherbeei_contig7660.1.1 ID=mRNA_P-wetherbeei_contig7660.1.1|Name=mRNA_P-wetherbeei_contig7660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1494bp|location=Sequence derived from alignment at P-wetherbeei_contig7660:1203..2798+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATGGAGCTTCCTCCCACGCTTCCCGCTCAACTTCCGTTGAGAAGCT
GCAAGATACTTTTGTGAAATCGCTTAGATCTGGGGACATACCAACGTCTT
TCACGCTTTTCGGTTCCAAGTACAAAGCAGTCCTCGTCCGACAATACCAT
GCATTATACGCAAAAGCTGGACACGAAAAGGAAAAGGCCGACATCTTCTG
TGACTTTTCTGACCGCAGCCGACCAGCGTTGCTCATTCCGGGCTGCCGCT
GCGGTCCCACGAACCAGAGTGACCGTACTACCGTCACCTACCATCACTCG
TTTATTGCGCTGGACAACATCGCCAACGCCGTGACGAGTGGCGGAAGGAG
GAATGACAGTGTCCCTGCCGGCAGCGGTGCCTGGGGGAAGCCGCGCAGGG
GAAGAATACGCGACATGCTCAAGGACCGGCAGGTCATTTCGTACGAGAGC
GATCCCGCCGTAGTGGCAAGAGCCTATGACCACGGCGCCAACCTGAACAT
TTGCGCCGACGAGGACAAGATGGCGGCCTGGGCGGCAGCGCAGCGGCAGC
GCCGCTTGTCGCTGCCAGCACTGGCGCCGCGGAAGGCCAACGCGGCCGGA
GGTGCTGGCGCCGGAACCGCAGGAGACCAGGAGACACTGTCGTCGTTCGA
TGGCAGCGAGCTCGCCGCTCCGGCGCGGTCGACAGCAGATCGGCCGCCGC
TCCGACGGGCAGCACTCGTTCCTGAGGGCACCTACGCGTGCTCGGGCGTC
GGACAGGCTGCTGCTGCGACGGCGGCGGCCGCCTCAACGACATGGCGGCC
ATCTGCGCCGCCGTCGCCTCCGCCCGGCTGCCCTCAGCCGAGTTGGGGCC
GCTCTGCCGGGCAAGCGAAGCGTCACGGGGCTGGCTTGCCCTGGGGGAGC
GGCCTTGGAAGGGGGCTGTCGCGACTGCTGCCGTTCCGCTCCGACACGCC
GCACCGGGCGGCGGGGGTGGGGAAGGCAGCGGCCGCGGTCGCAGCAGCAG
CGTTCGGGTCGCCAGGTGCGGGTGCTTTTTTCGACGACCGAGAGACGATG
GATCTGGATGATCTGGACGACGAAGACTATCCCGTCCATTTTGGCAGCCC
CGCGACGAGCAACGTCAGCAGCGGTGGCAGCGACGGCAGCAGCAAAGGGG
CATCTGCAATCGTCGGCGGCGGCAGCGGCGGCAACGGCGGCGGCAGCATT
GGTGGCAGCGGCAGCTGCAGCTGCGGTAACGGCGGTGACGGCAGCAGCAG
CAGCCCCGCAGCCGCCGAAGTTCCAGTCACACGTTGCAAGCTGGAACTGA
CCAGCGGCGGCGGCGGTCAATCAGCTGCGGAATCGCCGCTGGCGAGGCTC
GAGCTTGAGTTCAGCGACGACGAAGACGAAGAGTGGGAGCTCGATTACGG
CGTCGGCCCCGCGCCGGAACCGCCGGCACCAACGGCGACGCTGCCTGCGA
CGGCGGCGGCATCTGCCGGGCCGACGTCATCGCCGCCGCCGCCG
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