mRNA_P-wetherbeei_contig7553.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7553.3.1
Unique NamemRNA_P-wetherbeei_contig7553.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7553.3.1 vs. uniprot
Match: D7FU26_ECTSI (Endo-1,3-beta-glucanase C-terminal, family GH16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU26_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.170e-17
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 APYDEHMYLIINVAVGGVSGFFPDGEGGKFWTNADKDAAMTFFEHTGEWYPSW 159
            APYD+  Y+++NVAVGGVSGFFPDG GGK W N D DAAM F E T +W+ +W
Sbjct:   85 APYDQKFYVVMNVAVGGVSGFFPDGVGGKMWDNKDSDAAMKFHEATHDWHSTW 137          
BLAST of mRNA_P-wetherbeei_contig7553.3.1 vs. uniprot
Match: A0A6H5L4K1_9PHAE (GH16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.630e-17
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 APYDEHMYLIINVAVGGVSGFFPDGEGGKFWTNADKDAAMTFFEHTGEWYPSW 159
            APYD+  Y+++NVAVGGVSGFFPDG GGK W N D DAAM F E T +W+ +W
Sbjct:  319 APYDQKFYVVMNVAVGGVSGFFPDGVGGKMWHNKDSDAAMKFHEATHDWHSTW 371          
BLAST of mRNA_P-wetherbeei_contig7553.3.1 vs. uniprot
Match: A0A7S1GEA5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEA5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.760e-15
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 APYDEHMYLIINVAVGGVSGFFPDGEGGKFWTNADKDAAMTFFEHTGEWYPSW 159
            AP+D+  Y+I NVAVGG  G+FPDG+GGK WT+ D  A+  F+++  +W P+W
Sbjct:   37 APFDQEFYIIFNVAVGGTGGYFPDGQGGKPWTDTDAHASNDFWDNQAQWMPTW 89          
BLAST of mRNA_P-wetherbeei_contig7553.3.1 vs. uniprot
Match: A0A4D9CN72_9STRA (GH16 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CN72_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.320e-14
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 APYDEHMYLIINVAVGGVSGFFPDGEGGKFWTNADKDAAMTFFEHTGEWYPSWA 162
            AP+D+  YL++NVAVGG+S FF DGE GK WTN  K A   F +   EWYPSWA
Sbjct:  389 APFDQPFYLVLNVAVGGLSNFFEDGEDGKPWTNTGKGAPYLFAKAKDEWYPSWA 442          
BLAST of mRNA_P-wetherbeei_contig7553.3.1 vs. uniprot
Match: A0A1C7M7Z0_GRIFR (Beta-1,3-glucan-binding protein n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7M7Z0_GRIFR)

HSP 1 Score: 69.3 bits (168), Expect = 3.060e-13
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 APYDEHMYLIINVAVGGVSGFFPDGEGGKFWTNADKDAAMTFFEHTGEWYPSW 159
            AP+DE  YLI+NVAVGG SG+FPDG GGK W +A   A   F     EWY +W
Sbjct:  114 APFDEEFYLIVNVAVGGTSGWFPDGVGGKPWLDASLSAMSDFAHQQDEWYATW 166          
BLAST of mRNA_P-wetherbeei_contig7553.3.1 vs. uniprot
Match: A0A6A4HQG9_9AGAR (Concanavalin A-like lectin/glucanase n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4HQG9_9AGAR)

HSP 1 Score: 71.2 bits (173), Expect = 4.060e-13
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 APYDEHMYLIINVAVGGVSGFFPDGEGGKFWTNADKDAAMTFFEHTGEWYPSW 159
            AP+D+  YLI+NVAVGG +G+FPDG+G K W N D  A  +F E   +WYP+W
Sbjct:  396 APFDQEFYLIMNVAVGGTNGWFPDGQGNKPWLNQDTHAMRSFAEAKEQWYPTW 448          
BLAST of mRNA_P-wetherbeei_contig7553.3.1 vs. uniprot
Match: A0A1Q3E7J6_LENED (Glycoside hydrolase family 16 protein n=2 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3E7J6_LENED)

HSP 1 Score: 71.2 bits (173), Expect = 4.120e-13
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 APYDEHMYLIINVAVGGVSGFFPDGEGGKFWTNADKDAAMTFFEHTGEWYPSW 159
            AP+D+  YLII +AVGG SG+FPDG GGK WT+   +A   F E   EWY SW
Sbjct:  531 APFDQEFYLIIQLAVGGTSGWFPDGAGGKMWTDGSTEAMYDFAEAQDEWYASW 583          
BLAST of mRNA_P-wetherbeei_contig7553.3.1 vs. uniprot
Match: A0A1Q3E260_LENED (Alpha beta-hydrolase n=3 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3E260_LENED)

HSP 1 Score: 70.5 bits (171), Expect = 7.720e-13
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 APYDEHMYLIINVAVGGVSGFFPDGEGGKFWTNADKDAAMTFFEHTGEWYPSW 159
            +P+D+  YLI+NVAVGGV+G+FPDG+G K W +   DA  +F E   +WYP+W
Sbjct: 1062 SPFDQEFYLIMNVAVGGVNGWFPDGQGNKPWYDGGADAMRSFAEAQSQWYPTW 1114          
BLAST of mRNA_P-wetherbeei_contig7553.3.1 vs. uniprot
Match: A0A4S4LLD0_9AGAM (Uncharacterized protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LLD0_9AGAM)

HSP 1 Score: 66.6 bits (161), Expect = 9.270e-13
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 APYDEHMYLIINVAVGGVSGFFPDGEGGKFWTNADKDAAMTFFEHTGEWYPSW 159
            AP+D+  YLI++VA+GG +G+FPDG G K W N   +A   F E   EWYPSW
Sbjct:   40 APFDQPFYLIMDVAIGGTNGWFPDGAGNKPWLNGAINAMQLFAEAQDEWYPSW 92          
BLAST of mRNA_P-wetherbeei_contig7553.3.1 vs. uniprot
Match: A0A0H5QSM4_9EUKA (GH16 domain-containing protein n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QSM4_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 1.760e-12
Identity = 26/53 (49.06%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 APYDEHMYLIINVAVGGVSGFFPDGEGGKFWTNADKDAAMTFFEHTGEWYPSW 159
            AP+D+  ++I+NVAVGG + +FPDG+GGK WTNA++ A   F++   +W+P+W
Sbjct:  293 APFDQKFFMIMNVAVGGTNTYFPDGKGGKPWTNANQHAINAFWQAKDQWFPTW 345          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7553.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU26_ECTSI1.170e-1764.15Endo-1,3-beta-glucanase C-terminal, family GH16 n=... [more]
A0A6H5L4K1_9PHAE8.630e-1764.15GH16 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S1GEA5_9STRA4.760e-1550.94Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A4D9CN72_9STRA6.320e-1459.26GH16 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A1C7M7Z0_GRIFR3.060e-1356.60Beta-1,3-glucan-binding protein n=1 Tax=Grifola fr... [more]
A0A6A4HQG9_9AGAR4.060e-1354.72Concanavalin A-like lectin/glucanase n=1 Tax=Gymno... [more]
A0A1Q3E7J6_LENED4.120e-1356.60Glycoside hydrolase family 16 protein n=2 Tax=Lent... [more]
A0A1Q3E260_LENED7.720e-1352.83Alpha beta-hydrolase n=3 Tax=Lentinula edodes TaxI... [more]
A0A4S4LLD0_9AGAM9.270e-1352.83Uncharacterized protein n=1 Tax=Bondarzewia mesent... [more]
A0A0H5QSM4_9EUKA1.760e-1249.06GH16 domain-containing protein n=2 Tax=Spongospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7553contigP-wetherbeei_contig7553:1331..1492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FU26
Preferred nameGNBPB1
PFAMsCBM39,Glyco_hydro_16
Model size162
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.31e-14
EggNOG OGsCOG2273@1|root,2QRX5@2759|Eukaryota
DescriptionGlycosyl hydrolases family 16
Cds size144
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.0210762-CDS-P-wetherbeei_contig7553:1330..14741683186988.0210762-CDS-P-wetherbeei_contig7553:1330..1474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7553 1331..1474 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186988.032946-UTR-P-wetherbeei_contig7553:1474..14921683186988.032946-UTR-P-wetherbeei_contig7553:1474..1492Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7553 1475..1492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7553.3.1prot_P-wetherbeei_contig7553.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7553 1331..1474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7553.3.1

>prot_P-wetherbeei_contig7553.3.1 ID=prot_P-wetherbeei_contig7553.3.1|Name=mRNA_P-wetherbeei_contig7553.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
MYLIINVAVGGVSGFFPDGEGGKFWTNADKDAAMTFFEHTGEWYPSWA
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mRNA from alignment at P-wetherbeei_contig7553:1331..1492-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7553.3.1 ID=mRNA_P-wetherbeei_contig7553.3.1|Name=mRNA_P-wetherbeei_contig7553.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig7553:1331..1492- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGTACGACGAACACATGTACCTCATTATCAACGTGGCAGTGGGCGG CGTCTCTGGCTTTTTCCCAGACGGTGAAGGCGGAAAGTTTTGGACGAACG CTGACAAGGACGCTGCCATGACATTTTTTGAGCACACCGGCGAGTGGTAC CCTTCGTGGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7553:1331..1492-

>mRNA_P-wetherbeei_contig7553.3.1 ID=mRNA_P-wetherbeei_contig7553.3.1|Name=mRNA_P-wetherbeei_contig7553.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig7553:1331..1492- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACCTCATTATCAACGTGGCAGTGGGCGGCGTCTCTGGCTTTTTCCC
AGACGGTGAAGGCGGAAAGTTTTGGACGAACGCTGACAAGGACGCTGCCA
TGACATTTTTTGAGCACACCGGCGAGTGGTACCCTTCGTGGGCG
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