mRNA_P-wetherbeei_contig7549.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7549.1.1
Unique NamemRNA_P-wetherbeei_contig7549.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7549.1.1 vs. uniprot
Match: D8LB85_ECTSI (Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB85_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.230e-41
Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    1 RPFTRRLPEFAFWHQSIRGVLTAFGMTFFSLFDVPVFWPILLFYFLALLFLTLKKQINHMVKHRYVPWNWGKQKYKGGSSGK--GGKPAKNNK 273
            RPF+RRLPEF FW  S +G+L AFGMTFFSLFD+PVFWPILL YF+ L+FLT+K+Q+ HM+KH+YVPWNWGK  YKGG+S    GGKP KNNK
Sbjct:   96 RPFSRRLPEFQFWLSSQKGLLMAFGMTFFSLFDIPVFWPILLIYFIVLMFLTMKRQVKHMIKHKYVPWNWGKATYKGGASNGTGGGKPFKNNK 188          
BLAST of mRNA_P-wetherbeei_contig7549.1.1 vs. uniprot
Match: A0A7S3K339_9STRA (Protein RER1 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K339_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.090e-32
Identity = 55/83 (66.27%), Postives = 70/83 (84.34%), Query Frame = 1
Query:    1 RPFTRRLPEFAFWHQSIRGVLTAFGMTFFSLFDVPVFWPILLFYFLALLFLTLKKQINHMVKHRYVPWNWGKQKYK--GGSSG 243
            RPF+RR+PEF FW+ S +GVL AF MTFFS FD+PVFWPILL Y++AL+FLT+K+QI HM+KH+YVPW++GK KY   GG+ G
Sbjct:  107 RPFSRRVPEFKFWYSSTKGVLIAFVMTFFSFFDIPVFWPILLLYWIALVFLTMKRQIKHMIKHKYVPWSYGKAKYAAPGGAGG 189          
BLAST of mRNA_P-wetherbeei_contig7549.1.1 vs. uniprot
Match: A0A8J2X2Q3_9STRA (Protein RER1 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2Q3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.920e-32
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 RPFTRRLPEFAFWHQSIRGVLTAFGMTFFSLFDVPVFW----PILLFYFLALLFLTLKKQINHMVKHRYVPWNWGKQKY 225
            +PF+RR+PEF FW+ SI+GV TAF MTFFS+FDVPVFW    PILL YF AL FLT+K+QI HM+KH YVPW+WGK+ Y
Sbjct:  102 KPFSRRVPEFKFWYTSIKGVCTAFFMTFFSIFDVPVFWHSAVPILLVYFFALFFLTMKRQIKHMIKHEYVPWSWGKKSY 180          
BLAST of mRNA_P-wetherbeei_contig7549.1.1 vs. uniprot
Match: A0A482SYP4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYP4_9ARCH)

HSP 1 Score: 117 bits (293), Expect = 8.940e-32
Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 RPFTRRLPEFAFWHQSIRGVLTAFGMTFFSLFDVPVFWPILLFYFLALLFLTLKKQINHMVKHRYVPWNWGKQKYKGGSSGKGGK 255
            RPF RRLPEF FW+   R V+ +F MTFF LFDVPVFWPILL YF+ L F+T+K+QINHM+K+RYVP+++GKQKY G   GK GK
Sbjct:   68 RPFARRLPEFKFWYTCTRAVILSFFMTFFELFDVPVFWPILLLYFIVLFFITMKRQINHMIKYRYVPFSFGKQKYTG--KGKDGK 150          
BLAST of mRNA_P-wetherbeei_contig7549.1.1 vs. uniprot
Match: A0A7S2W0T1_9STRA (Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0T1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.640e-31
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 RPFTRRLPEFAFWHQSIRGVLTAFGMTFFSLFDVPVFWPILLFYFLALLFLTLKKQINHMVKHRYVPWNWGKQKYKGGSS 240
            RPF RRLPEF FW  S R V  +F MTFF +FD+PVFWPILL YF AL F T+K+QI HM+KH+YVPW WGK++Y G S+
Sbjct:  103 RPFRRRLPEFKFWLASARAVCLSFFMTFFQIFDIPVFWPILLLYFFALFFFTMKRQIMHMIKHKYVPWTWGKRRYTGKSA 182          
BLAST of mRNA_P-wetherbeei_contig7549.1.1 vs. uniprot
Match: A0A7S2V4J3_9STRA (Protein RER1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4J3_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.060e-30
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 RPFTRRLPEFAFWHQSIRGVLTAFGMTFFSLFDVPVFWPILLFYFLALLFLTLKKQINHMVKHRYVPWNWGKQKYKGGSS 240
            RPFTRRLPEF FWH   R V+ AF MTFF +FD+PVFWPILLFYF  L  LT+K+QI HM+ H YVPWN GKQ+++  +S
Sbjct:   96 RPFTRRLPEFQFWHACTRAVIIAFFMTFFKVFDIPVFWPILLFYFFVLFVLTMKRQIKHMITHGYVPWNRGKQRFQSKNS 175          
BLAST of mRNA_P-wetherbeei_contig7549.1.1 vs. uniprot
Match: F0YLH9_AURAN (Protein RER1 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLH9_AURAN)

HSP 1 Score: 115 bits (287), Expect = 1.460e-30
Identity = 55/91 (60.44%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 RPFTRRLPEFAFWHQSIRGVLTAFGMTFFSLFDVPVFWPILLFYFLALLFLTLKKQINHMVKHRYVPWNWGKQKYKGGSSGKGGKPAKNNK 273
            +PF+RR+PEF FW+ S +GV+ AF MTFFS   +PVFWPILL YF AL FLT+K+QI HM+KH+YVPW+WGK+ Y  G  G   +PAK++K
Sbjct:   90 KPFSRRVPEFKFWYSSTKGVVVAFFMTFFS---IPVFWPILLIYFFALFFLTMKRQIKHMIKHKYVPWSWGKKSYLDG--GGTARPAKDDK 175          
BLAST of mRNA_P-wetherbeei_contig7549.1.1 vs. uniprot
Match: A0A699YP44_HAELA (Protein RER1 (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YP44_HAELA)

HSP 1 Score: 114 bits (284), Expect = 5.290e-30
Identity = 52/91 (57.14%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    1 RPFTRRLPEFAFWHQSIRGVLTAFGMTFFSLFDVPVFWPILLFYFLALLFLTLKKQINHMVKHRYVPWNWGKQKYKGGSSGKGGKPAKNNK 273
            RPF RRLPEF FW+ SI+ ++   GMTFF++FDVPVFWPILL Y++ L  +T+K+QI HM+K+RY+P++WGK+KY    SGKG +  K++K
Sbjct:   98 RPFVRRLPEFKFWYSSIKSIVIGLGMTFFTVFDVPVFWPILLLYWVVLFIVTMKRQIRHMIKYRYLPFSWGKKKY----SGKGKQQLKDSK 184          
BLAST of mRNA_P-wetherbeei_contig7549.1.1 vs. uniprot
Match: A0A7S0QS77_9CRYP (Hypothetical protein n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QS77_9CRYP)

HSP 1 Score: 115 bits (288), Expect = 5.540e-30
Identity = 50/80 (62.50%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    1 RPFTRRLPEFAFWHQSIRGVLTAFGMTFFSLFDVPVFWPILLFYFLALLFLTLKKQINHMVKHRYVPWNWGKQKYKGGSS 240
            +PF R+LPEF FWH   RG+L A GMTFFSLF+VPVFWPIL+FYF AL F+T+++QI HM++H+Y+P++ GK K+KG  S
Sbjct:  132 KPFVRKLPEFKFWHSLTRGILIAMGMTFFSLFNVPVFWPILVFYFFALFFMTMRRQIQHMIRHKYLPFSIGKPKFKGKES 211          
BLAST of mRNA_P-wetherbeei_contig7549.1.1 vs. uniprot
Match: A0A7S0S8L2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S8L2_9CHLO)

HSP 1 Score: 114 bits (284), Expect = 7.070e-30
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 RPFTRRLPEFAFWHQSIRGVLTAFGMTFFSLFDVPVFWPILLFYFLALLFLTLKKQINHMVKHRYVPWNWGKQKYKGGSSGKGGKPA 261
            +PF RRLPEF FW++S +  +TAF MTF S+FDVPVFWPILL Y+L L F+T+K+QI HM+KH+YVP +WGK++Y     GKGG  A
Sbjct:  105 KPFVRRLPEFKFWYRSCKAFVTAFFMTFLSIFDVPVFWPILLMYWLMLFFMTMKQQIKHMIKHKYVPISWGKKQY---GKGKGGXXA 188          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7549.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB85_ECTSI5.230e-4170.97Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S3K339_9STRA1.090e-3266.27Protein RER1 n=1 Tax=Aureoumbra lagunensis TaxID=4... [more]
A0A8J2X2Q3_9STRA6.920e-3268.35Protein RER1 n=1 Tax=Pelagomonas calceolata TaxID=... [more]
A0A482SYP4_9ARCH8.940e-3265.88Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2W0T1_9STRA3.640e-3165.00Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=... [more]
A0A7S2V4J3_9STRA1.060e-3065.00Protein RER1 n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
F0YLH9_AURAN1.460e-3060.44Protein RER1 n=1 Tax=Aureococcus anophagefferens T... [more]
A0A699YP44_HAELA5.290e-3057.14Protein RER1 (Fragment) n=1 Tax=Haematococcus lacu... [more]
A0A7S0QS77_9CRYP5.540e-3062.50Hypothetical protein n=2 Tax=Cryptomonas curvata T... [more]
A0A7S0S8L2_9CHLO7.070e-3060.92Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7549contigP-wetherbeei_contig7549:1706..2419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LB85
Preferred nameRER1
PFAMsRer1
Model size276
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0001941,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0006621,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0007528,GO:0008104,GO:0008150,GO:0009986,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0030134,GO:0030135,GO:0030137,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032507,GO:0032879,GO:0032880,GO:0033036,GO:0033130,GO:0033365,GO:0034613,GO:0035437,GO:0042886,GO:0043113,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045185,GO:0046907,GO:0048193,GO:0048518,GO:0050789,GO:0050808,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051668,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071340,GO:0071702,GO:0071705,GO:0071840,GO:0072595,GO:0072657,GO:0097708,GO:0098588,GO:0098791,GO:0099173,GO:1903076,GO:1903078,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1905475,GO:1905477
Exons2
Evalue8.57e-42
EggNOG OGsCOG5249@1|root,KOG1688@2759|Eukaryota
Descriptionretrograde vesicle-mediated transport, Golgi to ER
Cds size276
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186987.6592157-CDS-P-wetherbeei_contig7549:1705..17901683186987.6592157-CDS-P-wetherbeei_contig7549:1705..1790Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7549 1706..1790 -
1683186987.6688871-CDS-P-wetherbeei_contig7549:2228..24191683186987.6688871-CDS-P-wetherbeei_contig7549:2228..2419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7549 2229..2419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7549.1.1prot_P-wetherbeei_contig7549.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7549 1706..2419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7549.1.1

>prot_P-wetherbeei_contig7549.1.1 ID=prot_P-wetherbeei_contig7549.1.1|Name=mRNA_P-wetherbeei_contig7549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
RPFTRRLPEFAFWHQSIRGVLTAFGMTFFSLFDVPVFWPILLFYFLALLF
LTLKKQINHMVKHRYVPWNWGKQKYKGGSSGKGGKPAKNNK*
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mRNA from alignment at P-wetherbeei_contig7549:1706..2419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7549.1.1 ID=mRNA_P-wetherbeei_contig7549.1.1|Name=mRNA_P-wetherbeei_contig7549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig7549:1706..2419- (Phaeothamnion wetherbeei SAG_119_79)
AGGCCGTTCACGCGAAGGCTGCCGGAGTTTGCGTTCTGGCACCAGAGCAT CCGGGGGGTGCTGACGGCGTTCGGGATGACGTTCTTCAGTCTTTTCGACG TACCGGTCTTCTGGCCCATACTACTCTTCTATTTTTTGGCGCTGCTCTTC CTCACGCTTAAAAAGCAAATCAATCACATGGTCAAGCACAGGTGCGTGGG TGGTTCCGTAGCATCCTTTGTGGTCCTGCATGTTCTTCTGGAAAGGTGAC AGCGCGGCCGTTCCATTTTCAAAATGTGGGGCGACTTCGGTACAGGATCA TGGACTTGCGTTGTTGGGGTTGGCACTGAATGGCAGTCATTTTGGCCTCT GATTGACCACAGCGCACTCTGTTGGAGTTTAAAAAGAATTCTTGTTGTTG CGCGAGGAAGGCCTGAAAGCTGACCGTTCCTACAAGTTAGATGGAGCCGT GCGGCGGCATGGATTAAGAAGACGTTGCCGGGACTTCATTAATTTATTGT CGGCGTTCGCCGCCGGCGTTGTCCTTGCCGCTAACGCCATTGCGTCCACA CTTCCAGTTGCGTTCTGTGGCATTCACCACCAGCAATGCACGTCCGCCAC ACTATGCCCCCCGCGCTGTGTGGTCGCAGATATGTGCCGTGGAACTGGGG TAAACAAAAGTACAAGGGGGGCAGCAGCGGGAAGGGGGGAAAACCGGCAA AAAACAATAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7549:1706..2419-

>mRNA_P-wetherbeei_contig7549.1.1 ID=mRNA_P-wetherbeei_contig7549.1.1|Name=mRNA_P-wetherbeei_contig7549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig7549:1706..2419- (Phaeothamnion wetherbeei SAG_119_79)
AGGCCGTTCACGCGAAGGCTGCCGGAGTTTGCGTTCTGGCACCAGAGCAT
CCGGGGGGTGCTGACGGCGTTCGGGATGACGTTCTTCAGTCTTTTCGACG
TACCGGTCTTCTGGCCCATACTACTCTTCTATTTTTTGGCGCTGCTCTTC
CTCACGCTTAAAAAGCAAATCAATCACATGGTCAAGCACAGATATGTGCC
GTGGAACTGGGGTAAACAAAAGTACAAGGGGGGCAGCAGCGGGAAGGGGG
GAAAACCGGCAAAAAACAATAAATGA
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