mRNA_P-wetherbeei_contig7546.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7546.1.1
Unique NamemRNA_P-wetherbeei_contig7546.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7546.1.1 vs. uniprot
Match: A0A835Z2R3_9STRA (Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R3_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.550e-44
Identity = 71/103 (68.93%), Postives = 88/103 (85.44%), Query Frame = 3
Query:  354 LYVGGLEETVKEEALHAAFVPFGEIAEVQIPKNWEKGENRGFGFVQYEEEEDALAALENMDGSELFGRVLKVNLARPMKHKLGSGKAVWTAEEWFQQMNAGEE 662
            LYVGGLEE V EE LHAAF+PFG++ EVQIP+ W+ G NRGFGFV+YE EEDA AA+ENMDG+EL GRVL+VN A+P+KHKLG+ +AVW+A+EWF+ M  G+E
Sbjct:   11 LYVGGLEENVNEELLHAAFIPFGDLVEVQIPREWKSGTNRGFGFVEYEAEEDASAAMENMDGAELAGRVLRVNRAKPLKHKLGAARAVWSADEWFKNMAEGDE 113          
BLAST of mRNA_P-wetherbeei_contig7546.1.1 vs. uniprot
Match: A0A7S2V6A5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6A5_9STRA)

HSP 1 Score: 148 bits (374), Expect = 6.390e-41
Identity = 69/110 (62.73%), Postives = 90/110 (81.82%), Query Frame = 3
Query:  345 KRMLYVGGLEETVKEEALHAAFVPFGEIAEVQIPKNWEKGENRGFGFVQYEEEEDALAALENMDGSELFGRVLKVNLARPMKHKLGSGKAVWTAEEWFQQMNAGEERDHE 674
            K+++YVGGL+E V EE LHAAF+PFG+I EV IP++++K  NRGFGFV +E+E+DA AA+ENMDG+ELFGRVL+ NLARP+KH+LG+ K VW+AE+WFQ      E D E
Sbjct:   13 KKVVYVGGLDEKVVEEVLHAAFIPFGDIVEVNIPRDFQKDLNRGFGFVDFEDEKDASAAIENMDGAELFGRVLRCNLARPIKHRLGASKPVWSAEDWFQSNVKDGEADEE 122          
BLAST of mRNA_P-wetherbeei_contig7546.1.1 vs. uniprot
Match: A0A7S2H1G4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1G4_9STRA)

HSP 1 Score: 146 bits (369), Expect = 5.160e-40
Identity = 71/124 (57.26%), Postives = 95/124 (76.61%), Query Frame = 3
Query:  324 MAKTVQNKRMLYVGGLEETVKEEALHAAFVPFGEIAEVQIPKNWEKGENRGFGFVQYEEEEDALAALENMDGSELFGRVLKVNLARPMKHKLGSGKAVWTAEEWFQQMNAGEERDHEGGGDDGD 695
            M   V+ KR LYVGGLEE   EE LHAAF+PFG + EVQIPK+++  +NRGFGFV+++ + DA  A++NMDGSEL GRVL+VN+A+P+ HKLG+ KAVW+++EWF+Q N  E++D     DD D
Sbjct:    1 MQVAVRKKRSLYVGGLEEEATEELLHAAFIPFGNVVEVQIPKDFKDNKNRGFGFVEFDNDADAAEAMDNMDGSELLGRVLRVNIAKPITHKLGASKAVWSSDEWFKQ-NLKEDQDLADAQDDTD 123          
BLAST of mRNA_P-wetherbeei_contig7546.1.1 vs. uniprot
Match: A0A6H5KWM4_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWM4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.180e-38
Identity = 66/106 (62.26%), Postives = 86/106 (81.13%), Query Frame = 3
Query:  324 MAKTVQNKRMLYVGGLEETVKEEALHAAFVPFGEIAEVQIPKNWEKGENRGFGFVQYEEEEDALAALENMDGSELFGRVLKVNLARPMKHKLGSGKAVWTAEEWFQ 641
            M K  Q KR +YVGGLEE V EE LHAAFVPFG+I EV +PK+     +RGFGFV++E EEDA AA++NMDG+EL+G+VL+VN A+PMKHKLG+  AVW+A++W++
Sbjct:    1 MTKEAQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFELEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYK 106          
BLAST of mRNA_P-wetherbeei_contig7546.1.1 vs. uniprot
Match: A0A7S2C0W9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0W9_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.190e-38
Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = 3
Query:  345 KRMLYVGGLEETVKEEALHAAFVPFGEIAEVQIPKNWEKGENRGFGFVQYEEEEDALAALENMDGSELFGRVLKVNLARPMKHKLGSGKAVWTAEEWFQ 641
            KR LYVGGLEE V EE LHAAF+PFG I EVQIPK++++  NRGFGF++Y  +EDA  A++NMDG+EL GRVL+VN+A+PMK KLG+ K VW+ EEW Q
Sbjct:   15 KRTLYVGGLEEQVDEELLHAAFIPFGNINEVQIPKDFKENTNRGFGFIEYTNDEDAAEAMDNMDGAELLGRVLRVNVAKPMKAKLGASKPVWSTEEWLQ 113          
BLAST of mRNA_P-wetherbeei_contig7546.1.1 vs. uniprot
Match: I2CRH6_NANGC (RRM domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRH6_NANGC)

HSP 1 Score: 136 bits (343), Expect = 2.750e-36
Identity = 62/108 (57.41%), Postives = 83/108 (76.85%), Query Frame = 3
Query:  330 KTVQNKRMLYVGGLEETVKEEALHAAFVPFGEIAEVQIPKNWEKGENRGFGFVQYEEEEDALAALENMDGSELFGRVLKVNLARPMKHKLGSGKAVWTAEEWFQQMNA 653
            K   +K ++YVGGL+E   EE LHAAF+PFG+I EV IPK++++   RGFGFV +E  EDA AA++NM+G+EL GRVLK N+ARPM+HKLG+ K VW+ +EWF+   A
Sbjct:    6 KPKADKSIVYVGGLDEQCTEEMLHAAFIPFGDIVEVNIPKDFKENTTRGFGFVHFESAEDAAAAIDNMEGAELLGRVLKCNVARPMQHKLGANKPVWSTDEWFKSQLA 113          
BLAST of mRNA_P-wetherbeei_contig7546.1.1 vs. uniprot
Match: A0A812XSP9_SYMMI (PPIE protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XSP9_SYMMI)

HSP 1 Score: 127 bits (319), Expect = 5.030e-33
Identity = 60/95 (63.16%), Postives = 78/95 (82.11%), Query Frame = 3
Query:  354 LYVGGLEETVKEEALHAAFVPFGEIAEVQIPKNWEKGENRGFGFVQYEEEEDALAALENMDGSELFGRVLKVNLARPMKHKLGSGKAVWTAEEWF 638
            +YVGGL+  V EE LHAAF+PFG+I EV IPK++ + ++RGFGFV +E+ EDA AA+ENM+G+ELFG+VLK N+A+PM  KL  G+AVWTAEEW 
Sbjct:    1 VYVGGLDSGVNEETLHAAFIPFGDIREVNIPKDFAENKHRGFGFVDFEDAEDAAAAIENMNGAELFGKVLKCNMAKPMT-KLQPGQAVWTAEEWL 94          
BLAST of mRNA_P-wetherbeei_contig7546.1.1 vs. uniprot
Match: A0A0C9RSU5_AMBAM (Putative cyclophilin-type peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9RSU5_AMBAM)

HSP 1 Score: 128 bits (322), Expect = 7.760e-33
Identity = 60/106 (56.60%), Postives = 86/106 (81.13%), Query Frame = 3
Query:  342 NKRMLYVGGLEETVKEEALHAAFVPFGEIAEVQIPKNWEKGENRGFGFVQYEEEEDALAALENMDGSELFGRVLKVNLARPMKHKLGSGKAVWTAEEWFQQMNAGE 659
            +KRM+YVGGL E V E+ LHAAF+PFG++ +VQIP ++E  ++RGF FV++E+ EDA AA++NM+ SELFGR ++VN+A+PMK K GS +AVW+ + W +Q +AGE
Sbjct:    1 SKRMVYVGGLAEEVDEKVLHAAFIPFGDVIDVQIPLDYETQKHRGFAFVEFEQAEDAAAAIDNMNDSELFGRTIRVNIAKPMKIKEGSTRAVWSEDSWLRQ-HAGE 105          
BLAST of mRNA_P-wetherbeei_contig7546.1.1 vs. uniprot
Match: UPI00035A027F (peptidyl-prolyl cis-trans isomerase E n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A027F)

HSP 1 Score: 132 bits (333), Expect = 1.080e-32
Identity = 62/118 (52.54%), Postives = 87/118 (73.73%), Query Frame = 3
Query:  342 NKRMLYVGGLEETVKEEALHAAFVPFGEIAEVQIPKNWEKGENRGFGFVQYEEEEDALAALENMDGSELFGRVLKVNLARPMKHKLGSGKAVWTAEEWFQQMNAGEERDHEGGGDDGD 695
            NKR++YVGG  E   E+ LHAAF+PFGEI ++Q+P ++E  ++RGF FV++E  EDA  A++NM+ SELFGR ++VNLA+PMK K G+ +AVW+ + W QQ      +D EG G+DGD
Sbjct:    6 NKRLVYVGGCAEETDEKILHAAFIPFGEIVDIQMPLDYETEKHRGFAFVEFESAEDAAHAIDNMNESELFGRTIRVNLAKPMKMKEGASRAVWSEDSWLQQHAGATLKDKEGEGEDGD 123          
BLAST of mRNA_P-wetherbeei_contig7546.1.1 vs. uniprot
Match: K1QAU8_CRAGI (Peptidyl-prolyl cis-trans isomerase E n=4 Tax=Crassostrea TaxID=6564 RepID=K1QAU8_CRAGI)

HSP 1 Score: 129 bits (324), Expect = 1.550e-31
Identity = 58/102 (56.86%), Postives = 82/102 (80.39%), Query Frame = 3
Query:  339 QNKRMLYVGGLEETVKEEALHAAFVPFGEIAEVQIPKNWEKGENRGFGFVQYEEEEDALAALENMDGSELFGRVLKVNLARPMKHKLGSGKAVWTAEEWFQQ 644
            QNKR++YVGGL E V E+ LHAAF+PFG+I ++QIP ++E  ++RGF FV++E  EDA AA++NM+ SE+FGR L+VN+A+PMK K GS +AVW+ + W Q+
Sbjct:    4 QNKRIVYVGGLAEEVDEKTLHAAFIPFGDILDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNDSEMFGRTLRVNMAKPMKLKEGSSRAVWSEDTWLQE 105          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7546.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2R3_9STRA2.550e-4468.93Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Trib... [more]
A0A7S2V6A5_9STRA6.390e-4162.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2H1G4_9STRA5.160e-4057.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6H5KWM4_9PHAE1.180e-3862.26RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2C0W9_9STRA5.190e-3865.66Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
I2CRH6_NANGC2.750e-3657.41RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A812XSP9_SYMMI5.030e-3363.16PPIE protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A0C9RSU5_AMBAM7.760e-3356.60Putative cyclophilin-type peptidyl-prolyl cis-tran... [more]
UPI00035A027F1.080e-3252.54peptidyl-prolyl cis-trans isomerase E n=1 Tax=Aply... [more]
K1QAU8_CRAGI1.550e-3156.86Peptidyl-prolyl cis-trans isomerase E n=4 Tax=Cras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7546contigP-wetherbeei_contig7546:1392..2619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQE3
Model size974
Max annot lvl2880.D8LQE3|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.06e-41
EggNOG OGsCOG0652@1|root,KOG0111@2759|Eukaryota
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-10_005320.1
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size441
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186987.5390234-UTR-P-wetherbeei_contig7546:1391..16011683186987.5390234-UTR-P-wetherbeei_contig7546:1391..1601Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7546 1392..1601 -
1683186987.5761526-UTR-P-wetherbeei_contig7546:2296..26191683186987.5761526-UTR-P-wetherbeei_contig7546:2296..2619Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7546 2297..2619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186987.553513-CDS-P-wetherbeei_contig7546:1601..18281683186987.553513-CDS-P-wetherbeei_contig7546:1601..1828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7546 1602..1828 -
1683186987.5650697-CDS-P-wetherbeei_contig7546:2082..22961683186987.5650697-CDS-P-wetherbeei_contig7546:2082..2296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7546 2083..2296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7546.1.1prot_P-wetherbeei_contig7546.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7546 1602..2296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7546.1.1

>prot_P-wetherbeei_contig7546.1.1 ID=prot_P-wetherbeei_contig7546.1.1|Name=mRNA_P-wetherbeei_contig7546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MAKTVQNKRMLYVGGLEETVKEEALHAAFVPFGEIAEVQIPKNWEKGENR
GFGFVQYEEEEDALAALENMDGSELFGRVLKVNLARPMKHKLGSGKAVWT
AEEWFQQMNAGEERDHEGGGDDGDGSGDAAWAPPGPDSLQPAPAAS*
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mRNA from alignment at P-wetherbeei_contig7546:1392..2619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7546.1.1 ID=mRNA_P-wetherbeei_contig7546.1.1|Name=mRNA_P-wetherbeei_contig7546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1228bp|location=Sequence derived from alignment at P-wetherbeei_contig7546:1392..2619- (Phaeothamnion wetherbeei SAG_119_79)
CCCTAACCTGCCATAGCAAACCCGGGGACACCAGTGGACGGCGGACAGCC CCAGAGAAGGCAGTGGTGTGTCCGAGCCATTACAGGCACATGGGGGCGCC AGGCAGGGGCTCTTGAGGAGATGAGCCGGCGAAGCCACAATGGCCTTTGT AACAAATAATCCAAGACAAAAAGAAAAAGGAATGCAGCCACTGTATTCCA CGAAAATACCTTTGGGCACGCTGCACCCCTTCGAAACAATAATCTTTCAC TGCCAAGAAAGCAGATTTTTACAGTATCCCAGCCCCCAGCCTCAGTCCTT TGGTGCTGGCGAGTAACCAAGCCATGGCCAAGACGGTGCAGAACAAGCGC ATGCTATACGTGGGCGGGCTGGAGGAAACCGTCAAGGAGGAGGCTCTCCA CGCCGCTTTCGTTCCGTTTGGAGAAATCGCGGAGGTCCAGATCCCCAAAA ACTGGGAAAAGGGAGAGAACCGAGGCTTCGGCTTTGTTCAGTATGAGGAA GAGGAGGACGCACTGGCCGCATTAGAAAACATGGACGGTGAGTGGCCGTG TGAAGCTTTCAAATATCATTTCGTCCTCATCTATATTGTTGCGTACTGCA GCCTCGGCCCCACCCATGATGTCTGTTCGTCACCTGGCATCGCCGCCATT ACTTCGGTGGCACCGCCGTCTTTCATCCGCCACTGAACTCTCACCGCCAT CACCGCGGCCGCCGCTGTCCGCCGCCGATGCTTACCGCCGCCACCCGCCG CCAACCGCCGCTGCCGCCGCCAATCGCCGCCACCACTGCAGGGTCGGAGC TCTTCGGGCGGGTCCTCAAGGTGAACCTGGCGCGGCCGATGAAGCACAAG CTGGGATCCGGCAAGGCGGTGTGGACGGCGGAAGAGTGGTTCCAGCAGAT GAACGCCGGCGAGGAACGGGACCACGAGGGCGGCGGCGATGATGGCGACG GCAGCGGGGACGCAGCCTGGGCGCCACCAGGGCCCGATTCCTTGCAGCCG GCGCCGGCGGCCAGCTGACAGGGAAACCGCGGCCGCCATAATGAAGAAAT ACGAAAGGTAGCTCAAACGTTCCGTTGCATGTCACGAGCATGCGTTGTTC TTTGCCTGGAGCTCTTTCTGCTCGAAGTCCGGCGACATTTCCAGTTGGCC GTCGTGCGATGTGCGCAGCAAATTTCGCCCTTGGGTTGCCTACAATTAAT GGCACTCCAGGGGCTCTTCGGAAAGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7546:1392..2619-

>mRNA_P-wetherbeei_contig7546.1.1 ID=mRNA_P-wetherbeei_contig7546.1.1|Name=mRNA_P-wetherbeei_contig7546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig7546:1392..2619- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAAGACGGTGCAGAACAAGCGCATGCTATACGTGGGCGGGCTGGA
GGAAACCGTCAAGGAGGAGGCTCTCCACGCCGCTTTCGTTCCGTTTGGAG
AAATCGCGGAGGTCCAGATCCCCAAAAACTGGGAAAAGGGAGAGAACCGA
GGCTTCGGCTTTGTTCAGTATGAGGAAGAGGAGGACGCACTGGCCGCATT
AGAAAACATGGACGGGTCGGAGCTCTTCGGGCGGGTCCTCAAGGTGAACC
TGGCGCGGCCGATGAAGCACAAGCTGGGATCCGGCAAGGCGGTGTGGACG
GCGGAAGAGTGGTTCCAGCAGATGAACGCCGGCGAGGAACGGGACCACGA
GGGCGGCGGCGATGATGGCGACGGCAGCGGGGACGCAGCCTGGGCGCCAC
CAGGGCCCGATTCCTTGCAGCCGGCGCCGGCGGCCAGCTGA
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