mRNA_P-wetherbeei_contig7532.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7532.1.1
Unique NamemRNA_P-wetherbeei_contig7532.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7532.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7532contigP-wetherbeei_contig7532:487..3059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2056
Hectar predicted targeting categoryother localisation
Exons2
Cds size2052
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.6931956-CDS-P-wetherbeei_contig7532:488..7701683186986.6931956-CDS-P-wetherbeei_contig7532:488..770Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7532 489..770 -
1683186986.7046838-CDS-P-wetherbeei_contig7532:1289..30591683186986.7046838-CDS-P-wetherbeei_contig7532:1289..3059Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7532 1290..3059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7532.1.1prot_P-wetherbeei_contig7532.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7532 489..3059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7532.1.1

>prot_P-wetherbeei_contig7532.1.1 ID=prot_P-wetherbeei_contig7532.1.1|Name=mRNA_P-wetherbeei_contig7532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=684bp
EQLKAARAAGKAVAEEEAAREAAARGAAATKVKAAAIAACAAAAAAAGVA
AGSAPSEEAAAEAVALEKTQPPHSPAARKGRGGAAAAAAALTAAAAATAP
EAAAAAATEVLTEAREDAAASRCTDDVAAAPARRGTAAAKAAAAAAAAVA
AAAAASATATAEGGAVEEVAKAPPKGRATRASKAAVAKAAKAAKAEAAKA
KAAETAAAAATAAEQSAPELAAETVPDAERTMGGGRASKTASAGVKKPAK
NARVAATAAGNAADASGEAPRARGPHSPAAASEESDGDSSDENAATTRRS
ALRGRGARRRGADGPAVAAADDAPTIAGRKRATAARSKIGGKGSAVAAGA
AERDVSGSTDPPIPRKQRKGDVTVAAAATGATGAAVAEKGEPMVASVLPM
PGGAVAGSPCTSGRRPATKRGGWASASSSSDSDGGPVAWGGGSRGGGGGG
GGDGGKRPNGKPKRGRATSSAESGSLRRGSRRGRAAAASADGSGSDRRGG
GGNAGRRRKWSRKGSPIDSSRSSSSGRGSSSDSGADRRRRRLHRDRDADD
QGSDGERQGPRRDRYFDTDAKEREPASVAVWNLEPETTKAEFKELMSNFG
EELLDVKLPYNPNSRAPWLATFIDRAAADRVVRAGDNKDHNGMPLEMRPD
MKPPPLAGRMPAAAVAAVAGLPPRHRSRARRSAS
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mRNA from alignment at P-wetherbeei_contig7532:487..3059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7532.1.1 ID=mRNA_P-wetherbeei_contig7532.1.1|Name=mRNA_P-wetherbeei_contig7532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2573bp|location=Sequence derived from alignment at P-wetherbeei_contig7532:487..3059- (Phaeothamnion wetherbeei SAG_119_79)
GAACAGCTGAAGGCGGCGCGTGCGGCCGGAAAGGCGGTCGCGGAGGAAGA
GGCGGCCCGGGAGGCGGCGGCGAGGGGGGCCGCCGCGACGAAGGTTAAGG
CGGCGGCTATTGCTGCTTGTGCTGCTGCTGCAGCAGCAGCAGGAGTTGCG
GCCGGATCAGCACCTTCCGAGGAGGCTGCGGCAGAGGCTGTGGCGCTTGA
GAAGACGCAGCCGCCGCACTCGCCGGCCGCTCGGAAGGGACGTGGCGGTG
CTGCGGCGGCGGCAGCAGCCTTGACGGCAGCTGCGGCCGCGACGGCGCCA
GAGGCGGCGGCAGCAGCAGCAACAGAGGTGTTGACGGAGGCCAGGGAAGA
CGCGGCGGCATCGAGATGTACCGACGACGTCGCTGCGGCTCCCGCTCGGA
GAGGCACGGCAGCCGCAAAGGCTGCTGCTGCCGCCGCCGCCGCCGTCGCC
GCCGCGGCCGCCGCCAGTGCGACTGCTACCGCCGAGGGTGGCGCCGTGGA
GGAAGTCGCCAAAGCACCACCGAAAGGCAGAGCGACGCGTGCATCGAAGG
CAGCGGTGGCCAAGGCCGCCAAGGCTGCGAAGGCGGAGGCCGCCAAGGCG
AAGGCGGCAGAAACTGCTGCTGCCGCTGCCACCGCCGCTGAACAGTCGGC
GCCAGAGCTAGCGGCAGAGACCGTGCCTGACGCAGAGCGGACCATGGGGG
GAGGCCGGGCGTCGAAGACTGCGTCCGCCGGCGTCAAAAAGCCGGCGAAG
AACGCGCGGGTGGCGGCTACGGCCGCTGGAAATGCCGCCGACGCGAGCGG
CGAGGCTCCTCGCGCGAGAGGCCCGCATTCCCCTGCTGCGGCCAGCGAGG
AAAGCGACGGCGACAGCAGCGACGAGAATGCGGCCACGACGCGTCGGAGC
GCGCTGCGCGGCCGTGGCGCCAGGCGGCGCGGCGCCGACGGTCCAGCGGT
GGCAGCTGCCGACGACGCGCCGACAATAGCGGGTCGTAAGCGCGCCACTG
CGGCGCGATCCAAGATCGGCGGCAAGGGGTCGGCTGTAGCTGCAGGGGCG
GCGGAGCGGGACGTGAGCGGAAGCACGGACCCACCAATACCCCGCAAGCA
GCGCAAGGGCGATGTGACGGTGGCGGCGGCGGCTACCGGGGCAACAGGGG
CGGCGGTGGCGGAGAAGGGAGAGCCGATGGTGGCGTCCGTGTTGCCCATG
CCAGGAGGTGCTGTGGCTGGCAGCCCTTGCACAAGCGGCCGCAGGCCGGC
TACCAAGCGCGGAGGGTGGGCGTCTGCAAGTAGCAGCAGCGACTCCGACG
GAGGACCTGTGGCCTGGGGGGGCGGCAGCCGCGGCGGCGGCGGCGGCGGC
GGCGGCGACGGCGGCAAGCGGCCGAATGGTAAGCCTAAGCGCGGTCGGGC
GACGAGCAGCGCGGAGAGTGGCAGCCTCCGGCGCGGGAGCCGCCGGGGCC
GCGCGGCGGCCGCCAGCGCGGACGGCAGCGGGAGCGATCGGCGGGGCGGG
GGCGGGAATGCCGGCAGGCGGCGCAAGTGGAGCAGGAAAGGCAGCCCCAT
AGACAGCAGCAGAAGCAGCAGCAGCGGCCGTGGCAGCAGCAGCGACAGCG
GCGCGGATCGGCGGCGTCGACGGCTGCACCGTGACCGCGATGCTGACGAT
CAGGGCAGCGACGGGGAGCGCCAGGGGCCCCGGCGTGATCGGTACTTTGA
CACGGACGCAAAGGAGAGGGAGCCAGCGTCGGTGGCAGTTTGGAACCTGG
AGCCGGAGACGACAAAGGCGGTGAGTCGATGGCGTTCCTCTTGTTCTCCA
GGCGTGATACGCTTATGGCTTCTCAAAGCCGCTTGGGGCATGTTTTTCAA
TGGGAAAGAATTTCTTTATTTGGAGTTCGCTAGGCTTTGTTGGTCCGCTG
GATTGAAGTCGGGTGTAAGGCGTGTTAAACGGCGCGCTCTCACCCTGGAT
ATCGATGACTATCTATTTGAAGGTGCATCTTCTTGCTTTCAGTCGCGGTT
GGACGAAAGGGTTTAGCCGATCAGCGCTCTTCATTGGCACGTTTGATTGG
GAAAAATGGCCTGTGGCAGATTGTGAGCATCTTAAGATGGTTTTCTGTTT
GTCGCGAGCACGTGCCTTCTGATACGTACTAAAGAGGGCCCTAGATTGGA
CCGGCGACGCGCAGCCGCCAGCGGAAGCTGCCTACGAAGAGAAACCAAAT
AGAAACAATTTCTCCGTCTCAATCTTTGTCTTTGTTCTGGGTAATATAAC
TGTGTATAATAATGTAACTACCCCTTTTCTGACTGGCAGGAATTCAAGGA
GCTCATGTCGAATTTCGGGGAGGAACTGCTCGACGTGAAGCTGCCCTACA
ACCCCAACTCACGCGCCCCGTGGCTCGCCACCTTCATAGATCGCGCCGCA
GCCGACCGTGTCGTCCGCGCCGGCGACAACAAGGATCACAACGGGATGCC
GCTGGAGATGCGGCCGGACATGAAGCCGCCGCCGCTGGCGGGCCGCATGC
CGGCGGCGGCCGTGGCGGCAGTGGCGGGACTGCCGCCGCGGCACAGATCG
CGGGCGCGGCGGTCGGCATCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7532:487..3059-

>mRNA_P-wetherbeei_contig7532.1.1 ID=mRNA_P-wetherbeei_contig7532.1.1|Name=mRNA_P-wetherbeei_contig7532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2052bp|location=Sequence derived from alignment at P-wetherbeei_contig7532:487..3059- (Phaeothamnion wetherbeei SAG_119_79)
GAACAGCTGAAGGCGGCGCGTGCGGCCGGAAAGGCGGTCGCGGAGGAAGA
GGCGGCCCGGGAGGCGGCGGCGAGGGGGGCCGCCGCGACGAAGGTTAAGG
CGGCGGCTATTGCTGCTTGTGCTGCTGCTGCAGCAGCAGCAGGAGTTGCG
GCCGGATCAGCACCTTCCGAGGAGGCTGCGGCAGAGGCTGTGGCGCTTGA
GAAGACGCAGCCGCCGCACTCGCCGGCCGCTCGGAAGGGACGTGGCGGTG
CTGCGGCGGCGGCAGCAGCCTTGACGGCAGCTGCGGCCGCGACGGCGCCA
GAGGCGGCGGCAGCAGCAGCAACAGAGGTGTTGACGGAGGCCAGGGAAGA
CGCGGCGGCATCGAGATGTACCGACGACGTCGCTGCGGCTCCCGCTCGGA
GAGGCACGGCAGCCGCAAAGGCTGCTGCTGCCGCCGCCGCCGCCGTCGCC
GCCGCGGCCGCCGCCAGTGCGACTGCTACCGCCGAGGGTGGCGCCGTGGA
GGAAGTCGCCAAAGCACCACCGAAAGGCAGAGCGACGCGTGCATCGAAGG
CAGCGGTGGCCAAGGCCGCCAAGGCTGCGAAGGCGGAGGCCGCCAAGGCG
AAGGCGGCAGAAACTGCTGCTGCCGCTGCCACCGCCGCTGAACAGTCGGC
GCCAGAGCTAGCGGCAGAGACCGTGCCTGACGCAGAGCGGACCATGGGGG
GAGGCCGGGCGTCGAAGACTGCGTCCGCCGGCGTCAAAAAGCCGGCGAAG
AACGCGCGGGTGGCGGCTACGGCCGCTGGAAATGCCGCCGACGCGAGCGG
CGAGGCTCCTCGCGCGAGAGGCCCGCATTCCCCTGCTGCGGCCAGCGAGG
AAAGCGACGGCGACAGCAGCGACGAGAATGCGGCCACGACGCGTCGGAGC
GCGCTGCGCGGCCGTGGCGCCAGGCGGCGCGGCGCCGACGGTCCAGCGGT
GGCAGCTGCCGACGACGCGCCGACAATAGCGGGTCGTAAGCGCGCCACTG
CGGCGCGATCCAAGATCGGCGGCAAGGGGTCGGCTGTAGCTGCAGGGGCG
GCGGAGCGGGACGTGAGCGGAAGCACGGACCCACCAATACCCCGCAAGCA
GCGCAAGGGCGATGTGACGGTGGCGGCGGCGGCTACCGGGGCAACAGGGG
CGGCGGTGGCGGAGAAGGGAGAGCCGATGGTGGCGTCCGTGTTGCCCATG
CCAGGAGGTGCTGTGGCTGGCAGCCCTTGCACAAGCGGCCGCAGGCCGGC
TACCAAGCGCGGAGGGTGGGCGTCTGCAAGTAGCAGCAGCGACTCCGACG
GAGGACCTGTGGCCTGGGGGGGCGGCAGCCGCGGCGGCGGCGGCGGCGGC
GGCGGCGACGGCGGCAAGCGGCCGAATGGTAAGCCTAAGCGCGGTCGGGC
GACGAGCAGCGCGGAGAGTGGCAGCCTCCGGCGCGGGAGCCGCCGGGGCC
GCGCGGCGGCCGCCAGCGCGGACGGCAGCGGGAGCGATCGGCGGGGCGGG
GGCGGGAATGCCGGCAGGCGGCGCAAGTGGAGCAGGAAAGGCAGCCCCAT
AGACAGCAGCAGAAGCAGCAGCAGCGGCCGTGGCAGCAGCAGCGACAGCG
GCGCGGATCGGCGGCGTCGACGGCTGCACCGTGACCGCGATGCTGACGAT
CAGGGCAGCGACGGGGAGCGCCAGGGGCCCCGGCGTGATCGGTACTTTGA
CACGGACGCAAAGGAGAGGGAGCCAGCGTCGGTGGCAGTTTGGAACCTGG
AGCCGGAGACGACAAAGGCGGAATTCAAGGAGCTCATGTCGAATTTCGGG
GAGGAACTGCTCGACGTGAAGCTGCCCTACAACCCCAACTCACGCGCCCC
GTGGCTCGCCACCTTCATAGATCGCGCCGCAGCCGACCGTGTCGTCCGCG
CCGGCGACAACAAGGATCACAACGGGATGCCGCTGGAGATGCGGCCGGAC
ATGAAGCCGCCGCCGCTGGCGGGCCGCATGCCGGCGGCGGCCGTGGCGGC
AGTGGCGGGACTGCCGCCGCGGCACAGATCGCGGGCGCGGCGGTCGGCAT
CG
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