mRNA_P-wetherbeei_contig753.11.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig753.11.1
Unique NamemRNA_P-wetherbeei_contig753.11.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig753.11.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 172 bits (436), Expect = 9.950e-44
Identity = 97/283 (34.28%), Postives = 158/283 (55.83%), Query Frame = 2 
Query: 3455 PNTYREALQTPEAREWQAACDADHGVTDGARGLQLGGAAESPHDTQKPLGVQG----QAQHAGELVNYKGRVVVKGFLQTPGVDFETLSLSAPVANINEFRCVIALAAARGWRLHQMDVETAHLNVLLEEDLYMKAPDDFSERGAGGAEFVWQLHRSLYGLRQSAFNWNVTISEFFVEIGFVAACSSPCVFVRRRGSSILIAVLYADDLLLAGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGMRVSRNDAAGTVP----HYIRDMAARYGMETTNPTRLPAD 4279
            P T++ A+++ +A +W+ ACD++    D             P   +K +G +     +   AGE+  +K R+V KGF Q   +D++     APVA     R V++LAA  G +LHQMDV+TA LN +L+ED+YM  PD + +      + V +L RSLYGL+QS   WN TI +F +++GF    S  CV+++R G  ++   LY DDL+LA +++  L+  K  +  RF + DLGE  + LGM +  +  +G V      +++ +  ++GM+ + P + P D
Sbjct:   24 PTTFKSAMESTDAVKWKEACDSE---CDSLLKNDTWDVVPLPKG-RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYD--ETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDH--PDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQD 298
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BLAST of mRNA_P-wetherbeei_contig753.11.1 vs. uniprot
Match: H3H7U0_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U0_PHYRM)

HSP 1 Score: 174 bits (440), Expect = 3.010e-42
Identity = 98/283 (34.63%), Postives = 159/283 (56.18%), Query Frame = 2 
Query: 3455 PNTYREALQTPEAREWQAACDADHGVTDGARGLQLGGAAESPHDTQKPLGVQG----QAQHAGELVNYKGRVVVKGFLQTPGVDFETLSLSAPVANINEFRCVIALAAARGWRLHQMDVETAHLNVLLEEDLYMKAPDDFSERGAGGAEFVWQLHRSLYGLRQSAFNWNVTISEFFVEIGFVAACSSPCVFVRRRGSSILIAVLYADDLLLAGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGMRVSRNDAAGTVP----HYIRDMAARYGMETTNPTRLPAD 4279
            P T++ A+++ +A +W+ ACD++    D             P   +K +G +     +   AGE+  +K R+V KGF Q  G+D++     APVA     R V++LAA  G +LHQMDV+TA LN +L+ED+YM  PD + +      + V +L RSLYGL+QS   WN TI +F +++GF    S  CV+++R G  ++   LY DDL+LA +++  L+  K  +  RF + DLGE  + LGM + ++   G +      + +D+  ++ M+ +NP + P D
Sbjct:  161 PTTFKSAMESSDAVKWKEACDSE---CDSLLKNDTWDVVPLPKG-RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYD--ETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDH--PDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQD 435
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BLAST of mRNA_P-wetherbeei_contig753.11.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 166 bits (421), Expect = 7.740e-42
Identity = 86/222 (38.74%), Postives = 133/222 (59.91%), Query Frame = 2 
Query: 3626 AGELVNYKGRVVVKGFLQTPGVDFETLSLSAPVANINEFRCVIALAAARGWRLHQMDVETAHLNVLLEEDLYMKAPDDFSERGAGGAEFVWQLHRSLYGLRQSAFNWNVTISEFFVEIGFVAACSSPCVFVRRRGSSILIAVLYADDLLLAGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGMRVSRNDAAGTVP----HYIRDMAARYGMETTNPTRLPAD 4279
            AGE+  +K R+V KGF Q  G+D++     APVA     R V++LAA  G +LHQMDV+TA LN +L+ED+YM  PD + +      + V +L RSLYGL+QS   WN TI +F +++GF    S  CV+++R G  ++   LY DDL+LA +++  L+  K  +  RF + DLGE  + LGM +  +  +G V      +++ +  ++GM+ + P + P D
Sbjct:   42 AGEIERFKARLVAKGFSQKYGIDYD--ETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDH--PDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQD 259
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BLAST of mRNA_P-wetherbeei_contig753.11.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM)

HSP 1 Score: 173 bits (438), Expect = 1.630e-41
Identity = 98/283 (34.63%), Postives = 158/283 (55.83%), Query Frame = 2 
Query: 3455 PNTYREALQTPEAREWQAACDADHGVTDGARGLQLGGAAESPHDTQKPLGVQG----QAQHAGELVNYKGRVVVKGFLQTPGVDFETLSLSAPVANINEFRCVIALAAARGWRLHQMDVETAHLNVLLEEDLYMKAPDDFSERGAGGAEFVWQLHRSLYGLRQSAFNWNVTISEFFVEIGFVAACSSPCVFVRRRGSSILIAVLYADDLLLAGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGMRVSRNDAAGTVP----HYIRDMAARYGMETTNPTRLPAD 4279
            P T++ A+++ +A +W+ ACD++    D             P   +K +G +     +   AGE+  +K R+V KGF Q  G+D++     APVA     R V++LAA  G +LHQMDV+TA LN +L+ED+YM  PD + +      + V +L RSLYGL+QS   WN TI +F +++GF    S  CV+++R G  ++   LY DDL+LA +++  L   K  +  RF + DLGE  + LGM +  +  +G V      +++ +  ++GM+ + P + P D
Sbjct:  283 PTTFKSAMESSDAVKWKEACDSE---CDSLLKNDTWDVVPLPKG-RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYD--ETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDH--PDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQD 557
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BLAST of mRNA_P-wetherbeei_contig753.11.1 vs. uniprot
Match: H3H1B2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1B2_PHYRM)

HSP 1 Score: 171 bits (432), Expect = 2.110e-41
Identity = 96/283 (33.92%), Postives = 158/283 (55.83%), Query Frame = 2 
Query: 3455 PNTYREALQTPEAREWQAACDADHGVTDGARGLQLGGAAESPHDTQKPLGVQG----QAQHAGELVNYKGRVVVKGFLQTPGVDFETLSLSAPVANINEFRCVIALAAARGWRLHQMDVETAHLNVLLEEDLYMKAPDDFSERGAGGAEFVWQLHRSLYGLRQSAFNWNVTISEFFVEIGFVAACSSPCVFVRRRGSSILIAVLYADDLLLAGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGMRVSRNDAAGTVP----HYIRDMAARYGMETTNPTRLPAD 4279
            P T++ A+++ +A +W+ ACD++    D             P   +K +G +     +   AGE+  +K R+V KGF Q  G+D++     APVA     R V++LAA  G +LHQMDV+TA LN +L+ED+YM  PD + +      + V +L RSLYGL+QS   WN TI +F +++GF    S  C++++R G  ++   LY DDL+LA +S+  L   K  +  RF + D+G+  + LGM + ++   G +      + +D+  ++ M+ +NP + P D
Sbjct:   24 PTTFKSAMESSDAVKWKEACDSE---CDSLLKNDTWDVVPLPKG-RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYD--ETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDH--PDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRDGHDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQD 298
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BLAST of mRNA_P-wetherbeei_contig753.11.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 169 bits (427), Expect = 3.730e-41
Identity = 95/221 (42.99%), Postives = 130/221 (58.82%), Query Frame = 2 
Query: 3629 GELVNYKGRVVVKGFLQTPGVDFETLSLSAPVANINEFRCVIALAAARGWRLHQMDVETAHLNVLLEEDLYMKAPDDFSERGAGGAEFVWQLHRSLYGLRQSAFNWNVTISEFFVEIGFVAACSSPCVFVRRRGSSILIAVLYADDLLLAGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGMRVSRNDAAGTVP----HYIRDMAARYGMETTNPTRLPAD 4279
            G +  YK R+V KGFLQ  GVDFE     APVA     R ++++AA     LHQMDV+TA LN LLEE++YMK P+ F +  A   + V +L R+LYGL+QS   WN TI EF  +IGF    +  CV+V+R   +++  VLY DDL+LA N    L   K  +  RF + DLGE  + LGM V R+D +G V      ++  + A++GM+   P + P D
Sbjct:   52 GLIERYKARLVAKGFLQKYGVDFE--ETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFVD--AKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQD 268
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BLAST of mRNA_P-wetherbeei_contig753.11.1 vs. uniprot
Match: UPI00136360C9 (hypothetical protein n=1 Tax=Ligilactobacillus murinus TaxID=1622 RepID=UPI00136360C9)

HSP 1 Score: 162 bits (411), Expect = 6.800e-41
Identity = 96/250 (38.40%), Postives = 146/250 (58.40%), Query Frame = 2 
Query: 3455 PNTYREALQTPEAREWQAACDADHGVTDGARGLQLGGAAESPHDTQKPLGVQG----QAQHAGELVNYKGRVVVKGFLQTPGVDF-ETLSLSAPVANINEFRCVIALAAARGWRLHQMDVETAHLNVLLEEDLYMKAPDDFSERGAGGAEFVWQLHRSLYGLRQSAFNWNVTISEFFVEIGFVAACSSPCVFVRRRGSSILIAVLYADDLLLAGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGMRVSRN 4189
            P TY++A+  P++ +W  A  ++    +     Q+    + P    KP+G +     +    G ++ +KGR+V KGF Q  G+D+ ET S   PVA +   R + A+AA   + + QMDV+TA LN  L ED+YM  P+ F       A  V +L RS+YGL+Q++ +WN+   +   E GF+     PCV+ +  GS+I+  VLY DD+LL GN  PELQ +KT +G  F +KDLGEAA++LG+R+ R+
Sbjct:    6 PTTYQQAMSGPDSEKWLMAMKSE---MESMYENQVWTLVDPPEGV-KPIGCKWVFKKKTDMDGNVITFKGRLVAKGFKQIHGIDYDETFS---PVAMLKSIRILFAIAAHYDYEIWQMDVKTAFLNGKLLEDVYMTQPEGFVT--PENANKVCKLQRSIYGLKQASRSWNLHFDDAIKEFGFIKNEDEPCVYKKVSGSAIVFLVLYVDDILLIGNDIPELQSVKTWLGKCFSMKDLGEAAYVLGIRIYRD 246
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BLAST of mRNA_P-wetherbeei_contig753.11.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM)

HSP 1 Score: 160 bits (406), Expect = 1.630e-40
Identity = 89/249 (35.74%), Postives = 142/249 (57.03%), Query Frame = 2 
Query: 3455 PNTYREALQTPEAREWQAACDADHGVTDGARGLQLGGAAESPHDTQKPLGVQG----QAQHAGELVNYKGRVVVKGFLQTPGVDFETLSLSAPVANINEFRCVIALAAARGWRLHQMDVETAHLNVLLEEDLYMKAPDDFSERGAGGAEFVWQLHRSLYGLRQSAFNWNVTISEFFVEIGFVAACSSPCVFVRRRGSSILIAVLYADDLLLAGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGMRVSRN 4189
            P T++ A+++ +A +W+ ACD++    D             P   +K +G +     +   AGE+  +K R+V KGF Q  G+D++     APVA     R V++LAA  G +LHQMDV+TA LN +L+ED+YM  PD + +      + V +L RSLYGL+QS   WN TI +F +++GF    S  C++++R G  ++   LY DDL+LA +S+  L   K  +  RF + D+G+  + LGM + ++
Sbjct:    2 PTTFKSAMESSDAAKWKEACDSE---CDSLLKNDTWDVVPLPKG-RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYD--ETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDH--PDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRDGQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQD 242
[Close]
BLAST of mRNA_P-wetherbeei_contig753.11.1 vs. uniprot
Match: H3H842_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H842_PHYRM)

HSP 1 Score: 174 bits (441), Expect = 2.400e-40
Identity = 98/283 (34.63%), Postives = 158/283 (55.83%), Query Frame = 2 
Query: 3455 PNTYREALQTPEAREWQAACDADHGVTDGARGLQLGGAAESPHDTQKPLGVQG----QAQHAGELVNYKGRVVVKGFLQTPGVDFETLSLSAPVANINEFRCVIALAAARGWRLHQMDVETAHLNVLLEEDLYMKAPDDFSERGAGGAEFVWQLHRSLYGLRQSAFNWNVTISEFFVEIGFVAACSSPCVFVRRRGSSILIAVLYADDLLLAGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGMRVSRNDAAGTVP----HYIRDMAARYGMETTNPTRLPAD 4279
            P T++ A+++ +A +W+ ACD++    D             P   +K +G +     +   AGE+  +K R+V KGF Q  G+D++     APVA     R V+ LAA  G +LHQMDV+TA LN +L+ED+YM  PD + +      + V +L RSLYGL+QS   WN TI +F +++GF    S  CV+++R G  ++   LY DDL+LA +++  L+  K  +  RF + DLGE  + LGM +  +  +G V      +++ +  ++GM+ + P + P D
Sbjct:  609 PTTFKSAMESSDAVKWKEACDSE---CDSLLKNDTWDVVPLPKG-RKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYD--ETFAPVAKFTSIRIVLGLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEAH--PDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLILASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQD 883
[Close]
BLAST of mRNA_P-wetherbeei_contig753.11.1 vs. uniprot
Match: A0A4T9WAI5_9FIRM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=A0A4T9WAI5_9FIRM)

HSP 1 Score: 169 bits (429), Expect = 3.570e-40
Identity = 95/283 (33.57%), Postives = 160/283 (56.54%), Query Frame = 2 
Query: 3455 PNTYREALQTPEAREWQAACDADHGVTDGARGLQLGGAAESPHDTQKPLGVQG----QAQHAGELVNYKGRVVVKGFLQTPGVDFETLSLSAPVANINEFRCVIALAAARGWRLHQMDVETAHLNVLLEEDLYMKAPDDFSERGAGGAEFVWQLHRSLYGLRQSAFNWNVTISEFFVEIGFVAACSSPCVFVRRRGSSILIAVLYADDLLLAGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGMRVSRNDAAGTVP----HYIRDMAARYGMETTNPTRLPAD 4279
            P T++ A+++ +A +W+ ACD++    +  R  +       P   +K +G +     +   +GE+  +K R+V KGF Q  G+D++     APVA     R +++LAA     +HQMDV+TA LN LL+ED+YM  PD + +      ++V +L RSLYGL+QS   WN TI EF +++GF    S  C++++R    ++   LY DDL+LA +S+  L+  K  +  RF + D+G+  + LGM + ++ A G V      + +D+  ++ M+ +NP + P D
Sbjct:   69 PTTFKSAMESSDADKWKEACDSE---VESLRKNETWTLVPLPKG-RKAIGCRWVFRVKENQSGEIERFKARLVAKGFSQKYGIDYD--ETFAPVAKFTSIRVLLSLAAKYKLTVHQMDVKTAFLNGLLDEDIYMAQPDGYVD--GDRPDYVCRLKRSLYGLKQSPRMWNKTIDEFMLKLGFKKCESDHCIYLKRDNHDMMFVALYVDDLVLASSSDRMLKDTKQALSDRFEMTDMGQLKYFLGMEIEQDVATGKVSVRQTKFAKDILEKFKMDESNPVKTPQD 343
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig753.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3H8P6_PHYRM9.950e-4434.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H7U0_PHYRM3.010e-4234.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H934_PHYRM7.740e-4238.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H9Y1_PHYRM1.630e-4134.63CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3H1B2_PHYRM2.110e-4133.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5D6YB57_9STRA3.730e-4142.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00136360C96.800e-4138.40hypothetical protein n=1 Tax=Ligilactobacillus mur... [more]
H3H7D1_PHYRM1.630e-4035.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H842_PHYRM2.400e-4034.63Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A4T9WAI5_9FIRM3.570e-4033.57Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig753contigP-wetherbeei_contig753:2517..8857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size5699
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.52e-22
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size852
COG categoryL
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig753.11.1prot_P-wetherbeei_contig753.11.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig753 3752..4670 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.4528658-UTR-P-wetherbeei_contig753:2516..25721683186986.4528658-UTR-P-wetherbeei_contig753:2516..2572Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig753 2517..2572 -
1683186986.464018-UTR-P-wetherbeei_contig753:2821..28831683186986.464018-UTR-P-wetherbeei_contig753:2821..2883Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig753 2822..2883 -
1683186986.473699-UTR-P-wetherbeei_contig753:2893..30401683186986.473699-UTR-P-wetherbeei_contig753:2893..3040Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig753 2894..3040 -
1683186986.4940226-UTR-P-wetherbeei_contig753:3356..37511683186986.4940226-UTR-P-wetherbeei_contig753:3356..3751Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig753 3357..3751 -
1683186986.5333395-UTR-P-wetherbeei_contig753:4670..88571683186986.5333395-UTR-P-wetherbeei_contig753:4670..8857Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig753 4671..8857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.5048652-CDS-P-wetherbeei_contig753:3751..42271683186986.5048652-CDS-P-wetherbeei_contig753:3751..4227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig753 3752..4227 -
1683186986.5142639-CDS-P-wetherbeei_contig753:4282..46371683186986.5142639-CDS-P-wetherbeei_contig753:4282..4637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig753 4283..4637 -
1683186986.5235732-CDS-P-wetherbeei_contig753:4649..46701683186986.5235732-CDS-P-wetherbeei_contig753:4649..4670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig753 4650..4670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig753.11.1

>prot_P-wetherbeei_contig753.11.1 ID=prot_P-wetherbeei_contig753.11.1|Name=mRNA_P-wetherbeei_contig753.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=284bp
MTLPERCRTISETWPLATAWRRPTRHDCRRTPAQRVGHRYRAAAGGWHRR
ADAGLRRLPKHHWIADVRGVHHPPRCGIPGAEPGTLCSSADGGAYDDSEA
RAAVPYRDANAGAALLPAASSGDGDTTAAASLELVGYIDANLAGCLDSGR
STTGGLFLVAGGVVAFSSRLQQSVARSTMESEYMALFDAAQEAEQLRTLL
AHLGLEQTAPTVIHEDNTAALAVTMAAGHTHQSRHIRIRFARELVAAGVI
AVEQVSTADQLADGLTKNVGQERLLALRARTMG*
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mRNA from alignment at P-wetherbeei_contig753:2517..8857-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig753.11.1 ID=mRNA_P-wetherbeei_contig753.11.1|Name=mRNA_P-wetherbeei_contig753.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=6341bp|location=Sequence derived from alignment at P-wetherbeei_contig753:2517..8857- (Phaeothamnion wetherbeei SAG_119_79)
GACAAAACCGAACAAGGCGGCCGCAAGACAGTAGGGGGACGAGAAAAGCG
ACGGGGGGAAGAGCGGGGCGGGGACTCTGAAGCGCGATTAATCACCCACC
CACCAAAAAAAGGCCAAAACGGAGAATGCAACCAACACAGCCCCGGCATT
CCCCCATTCGCTATGCGAACAGACGCGCGAGACAGCGACCGATGCCGCCC
CGGCGCGCGGCAAGAGCACAAAAGAGACCCGGCTGAGCCGCCGCTCGCTA
CCAGCGGGACTGACAGCAGCCCAGATAGTCTTCACAAGATTTCATCTGCG
CGCGCACAAGGTTTTGGCGGACGCGAAATGCAAGCAAATGCGGCGGAGCC
GCCGCGCGATACCGAAATGACAGGCAGCGGCGCGACCGCAGGATCCTCGC
GAGCTCCAGGATCAAGATGGGGCTTTAAACTCACGCCAACCCACGACAAG
GCAGCATCATTTAGGCGCTCTCTGCCGTCGACAGCATCCCTTTCAAAGCG
GGGCACCGCTGCCCTCATGGCGAAAGAGGAAGGCTCCCCAACGTGACACG
CAAACCTTTCCAAGCAGGCGAAGCTCTCGTCAGGCAATGATCTTCGGGAA
ACCAAGTTTATTTCGGAAAAAACAAAGCGCTGTACCGTCCGCTGCTACTG
CCCGCAGTCATCACCCACCCGCTCAACAGCCTTGCTGTTTCTCTGTCGGA
ATTGGGGCTACAGAGAAGAGATTATTTATCCGAGACGAGGCTGCATAGGC
ATTGTCTCCTCCCACCTTTCGGTGGAGAGCAAAAAGCAATAAAGGAGTGC
GCACGCGAGCCTCTCCTCCTTTTGAAGCCAAAATCCACCAACCGCCTCGG
AGAAAGCGGGAGCAAGAAGAATTGGCTGGAGAATCCCTGCTGGGCCCGCG
CCCGGTGTGCAAAACTTTGGCAGTGTTAGACGGAAGCCTTCAATAATGAA
TTCACTGCTAACCGGCCGCATCCAAAAGGGGTCGACTGCCTGCAAACGAA
CGGCGCCCATTCCGCTTCAGGACGCCGCCGCGTAGCACCAAGTAAAAAAC
AGCGGTTTACTAGAGTCCCCGGCGTTAAGAAGCGGAACGGATCAGTTCTG
AAGAGCCTGCATCCATATGAGGAAAAACTTGTGCAATGAAATAAGATAAC
GCAACGATGCGTGCCACGACGAGACCAGTTCCCGAATGTGTTGCTTGAGG
AGGGAACTGCTTTAACTGGTCCTTCCCCTTGGGACGCTGGAGGTAAAGCA
GTAGAATAACCACAGCGGGAGTTCATTGTCGACAGCGGATCTGCGCGGAC
CTTCGTGTCCGATCTGTCGATTCTGCAACACGTCAAGCAGATCTCGCGCC
CGGCAGTGGCTGCCGGCAGCGAGGAGTACACCGCTACGCACAGCGTTCTG
CATGGCATCGTGGAAGAAGCTGATTCCGGCCGGCCGCTGGAGTTTAGCGT
TTTCAATGTTGAGTATATGCCGGGCTTCAAGATCAACCTCCTGTCCGTCC
GCCACCTGCACAAGCAGGGCATCACCGCTCTCTTCAATGGACCGAACAGT
GTGCTGTTAGATGCCCGTGGCGTCAAGCTACGGCTGCTCGACGACGACAG
CGGCATCTATAAGCTCAAATTCGTCTGCATGGTCCGGCTCCCTACTGACT
GGGAGTACCCGCCCGAGAGGTTTTACTGCCTTTCGGCCGTGAAGCATTAC
GAAGGTGACGGCTGCCGCAGCACGAAGCTGCCGCTGCCGGACGGAGACGG
CGGCGGCGCGCTGGCATTGACGCCGGCCGACGCAGTGGAAACGCTAGCGC
CAGCCGGTGGCGGCGTGCTGACGCTGCCGCCGGTGGCGGCGGCGCCACCG
CCAGCAGCCTGTCCTGTGTTCAGCGAGGAAGCGCAGCGGCGCTCGCTCCA
GCTGCATCAGCGGCTGTGCCATCCGGAAGACGGCGTGGTGGAAAGGTTGG
TTCGGCAAGGGCGGTTGGCGCTGGACTTTGAGTACGGCTTCGGCTTCTGC
GAGCCGTGCGTGCTGGGCAAGAGCATTAAGGCGGACGCCGGCAAGGCCGG
TGCCCAGCAGCGGGCGTCGGCGCCATGGGGATTCGTCTATATGGAAATAC
GGACCGGTGGCGCTGCCGGCGCGCAGCGGCTTTCCGTATGTGCTGCAGCT
GGTCTACCACTGCAAGCGCGTGCGGGCCCTCTACATGCTGCGCCACAAAG
ACGAGGCGGCGAAAGCGGTGAAGCATTTCATCATCGAGTGGGTGTGGCCG
CGCGGCTGCCGAATCCAGCGTCTGCGCGGCGAGAACGCGGCTGAGTTCAA
GGGGAGCGGCACGCAGTACGTGACGCGCCTGTTCGGCGACATCCAGTTGG
AGTACTCCGCGCCGTACTGCCACTGGCAGATAGGCGAAGTGGAGCGCGGC
TGGCATACGCTGGCCGATAAGACGCGCGCGATGATGGCGGCGGCGGGGCT
GCCGCCGCAGTACTGGGCGCACGTGATGAAGTACGTGTGCTGGCTGACCA
ACCACCTTCCTACTCGCGTGGCGCTGCCGGGCTGCGCCGTCACGCCGTTG
CAGGCGCTGGAGCCGGACACCGCACCGCTGGACCGTTTGACGCTGCATCC
GTGAGGCTGCCCCGTCTATATTCACGTCAACGACGGGACAGGGCAGACTG
CGCTGCAGGCTCAGGCCAAGGTGGGTTACTATCTGGGCCTGACGGGGAAC
AGCCGTACGTACACGGTGCTGGTGAAGGAGACTGGGGCTGTGGTGGAGGC
AGCATTTGGGAGCTGCACATTCAACGATTTCGGCCCGCCTTAGGGTGGTA
CGGATTTAGGGGAGCTGCTGCTGTCCTTTCCTGCTGCTCCCGCTGCCGTC
CCCTTCCCGCCGGCCGTTTCTGTCCCTCCTTCTGCGGACGTCCAAAGCGA
CAGGAGCCGCGGCGTTAAGCCTAGTGGCTCAAGCGGTTTGGAGAGCGACA
GCGACTCCAACGAGCTGGTGGAACTGCTCGGCGCCGAGGTGGTGACGGAC
TCAGACGACGTCAACGTGCCGTACCGTCCGCTGTACGTTCCAGCTGGCTT
AGAGATCTGCGAGTTCTACCGACCGGAGATGATGGGCTCCGACCTGAGCG
GCCACAAGATCGTCTTCAATTTCGACGACGGCAAATGAGACGTCGTCACT
TGCGTAAAGTTCTGCCCTAACGAGAAGAAGGGCAAGTCTAAGACGTGCAG
TACCCCGGCATTCCGCGCCCGACCAAAGCTGGTCAGCTGCGCAAGAAGGT
GGTTTGGGACGTCTACCGGCAGGAGCTGCCGCGGCATGGCTACGTGGCGG
GAGAAGACGCGCCGATCGGCAGCTGGCGAACCTTCGTGGAGGCGCAGCTG
CCGGACGTCGCAGGCCTGGCTGGCGCGGCAGTGGCTGATGCCGTTGTCGC
GGGAAGGTGCAAGGCCTTTCGCTGGCAGCGCTGCCGAGTGGTAAGCCGGC
GGCACCCAATACTTACCGCGAGGCGCTGCAGACGCCGGAGGCGCGGGAGT
GGCAGGCGGCGTGCGACGCAGATCATGGGGTCACTGACGGAGCACGGGGT
CTTCAGCTGGGTGGTGCGGCCGAAAGTCCGCACGACACTCAAAAGCCGCT
GGGTGTTCAAGGCCAAGCGCAACACGCCGGCGAACTTGTCAATTACAAGG
GCCGGGTTGTAGTGAAGGGCTTCCTGCAGACGCCCGGCGTGGACTTCGAA
ACGCTCTCGCTGTCGGCGCCGGTGGCCAACATCAACGAATTCCGCTGCGT
CATCGCTTTGGCGGCGGCGCGCGGCTGGCGTCTTCACCAGATGGACGTCG
AGACGGCCCACCTCAACGTGTTGCTGGAGGAAGACCTTTACATGAAGGCG
CCGGACGACTTTTCGGAGCGCGGCGCTGGCGGCGCGGAATTTGTTTGGCA
ACTGCATCGGTCGCTCTACGGGCTGCGGCAGTCGGCCTTCAACTGGAACG
TCACCATCTCGGAGTTCTTCGTCGAGATCGGCTTTGTGGCCGCATGTTCC
AGCCCCTGCGTCTTCGTGCGGCGCCGTGGGAGCAGCATTCTAATCGCCGT
GCTGTACGCGGACGACTTGCTGCTGGCGGGCAACAGCGAGCCGGAGCTGC
AGCTGCTGAAGACGGAGATCGGCGGCCGCTTCCGTGTGAAGGACCTCGGC
GAGGCGGCGCATCTTCTCGGCATGCGCGTCTCTCGTAATGACGCTGCCGG
AACGGTGCGCCTCGACCAAGCGCACTATATCCGAGACATGGCCGCTCGCT
ACGGCATGGAGACGACCAACCCGACACGACTGCCGGCGGACGCCAGCACA
ACGTGTCGGCCACCGGTATCGAGCCGCCGCGGGCGGATGGCACCGACGGG
CCGACGCCGGACTGCGGCGATTACCGAAGCATCATTGGATCGCTGATGTA
CGCGGCGTGCATCACCCGCCTCGATGTGGCATACCCGGTGCGGAGCCTGG
CACGCTATGCAGCAGCGCCGACGGCGGCGCATATGATGACAGCGAAGCGC
GTGCTGCGGTACCTTATCGGGACGCCAACGCTGGGGCTGCTCTACTACCG
GCAGCCAGCAGCGGCGACGGCGACAGCGACACCGGCGAGGGCGACGGTGA
CGGCGACGGCGACGGCGACGCCGGCGACAGCGACGGCGGCAGCATCACTG
GAGCTGGTGGGCTACATCGACGCAAATCTCGCAGGATGCTTGGACAGCGG
CCGCTCCACGACTGGCGGCCTGTTTCTGGTAGCGGGCGGCGTCGTGGCTT
TCTCATCTCGGCTGCAGCAGTCGGTGGCGCGATCGACGATGGAGAGCGAG
TACATGGCGCTCTTCGACGCGGCACAGGAAGCGGAGCAGCTGCGGACGCT
GCTGGCTCATCTGGGCTTGGAGCAGACTGCGCCAACGGTTATCCACGAGG
ACAACACAGCGGCGCTGGCGGTGACGATGGCGGCTGGACACACGCACCAG
TCGCGCCACATCCGCATCCGCTTCGCGCGGGAGCTGGTGGCGGCGGGCGT
AATCGCCGTGGAGCAGGTCAGCACGGCTGACCAGCTGGCCGATGGTCTGA
CAAAGAATGTCGGGCAAGAGCGGCTGCTGGCGCTTCGGGCTCGCACGATG
GGATAAGCCTTTGACTTCAGCGGCGTTACCAGTCGGCAGCTAAGGCGGCA
GAGAGGCAGCTTTGTCGCCGGGGAGGTTTTCTGTCTGTTTTGGTGCCGGC
GCTCTAGGAGTGGCGGCGCACGATGGCCTGCGCGGGACGGCGTCACCATC
GGGAACGCACATGAGACTTTAAGCTGGTCAAGGCAACGTGGTTGCTGGAT
TAGGAATGCTGAAGTTTGTTCTAGGGCTGGAGCCCTTCTGGGGGCGGATT
TCGGTCTTGCCTTCACGAGGACTGGGCGGGTTATGGACGCTTTCAGAGGC
CGCAGGCAGGAATGTTAGACATTCAGCCGGATATCGAAGAGAGGCAAACT
TAGCGGTTTTCGTGGGTACAGGCTATGTGGCCTTCCGGATTAGGTGCCGG
GTGTTAGCAATAACAGGCTTCTCTCGCCATCCGGGCGACAAGCAGCGAGC
GGCTGACAGGGTTGCGCCGGCAGGTGAGGCGAGCCGTTAGCAAGCGGAAC
GTTCTAGGCAGCTAGTTCATTAGCAGGGAGTTCCTCCTGGTGAGAATGCG
GAGGGTAAACACCCGGAAAGTTCTGGGAAGAACATGGGAGAAAGGAAATG
CGTTTATTCGAGGGGTTTCATCCGCTCACTCTTAACTCAGCAAGGGAACG
TAATACAAGTTTTGGGTCCGGGATAAGAGCCGTTATCTCTTTACGTTGGT
CATTTAGCTATACCGGGCTGTGCCGCCATTTGGGGGCGGGCGGAGCGGGC
GGCGCCTGCGGGGGAGCGTTAGCAATAACAGGCTTCTGCCGCCGACGGAT
GGCAAGTGGACGCTGGGGAAAGCGGTACTGGTGGGGACAGGCAAGCCGTC
AGCTGGTACCAGCAGCAGAAGTAGGTAGGGGCAAGCAATTATAGGCAGTT
CCTGACTGCTGTGGAAGGCCAGTTTGGCGAGGCCTTGTTTCTATAGTTTA
ATGACCAAAGCAAAGAGATTACGGCTCTTATCCCGGACCCAAAACTTGCA
CTATGCTCCCTTGCTGAGTTGAGAAGCGAGGAGAAACATGGCCTCGCCAA
ACTGGTATTCCACAGCAGTTAGGAACTGCCTATAATTTTGCTTCCCCCTA
CTGCTGGTTCCAGCTAACGAACGGCTTGCCTATCCCAGCGGCCACCTGCC
TTCCATCGGCGGGAGAAGCCTGTTATTACTAACAGTTTCTCTTCACTCTC
AACTCAGCAAAGGAACGTAATGCAAGTTTCGGGTCCGGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig753:2517..8857-

>mRNA_P-wetherbeei_contig753.11.1 ID=mRNA_P-wetherbeei_contig753.11.1|Name=mRNA_P-wetherbeei_contig753.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig753:2517..8857- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCTGCCGGAACGGTGCCGCACTATATCCGAGACATGGCCGCTCGC
TACGGCATGGAGACGACCAACCCGACACGACTGCCGGCGGACGCCAGCAC
AACGTGTCGGCCACCGGTATCGAGCCGCCGCGGGCGGATGGCACCGACGG
GCCGACGCCGGACTGCGGCGATTACCGAAGCATCATTGGATCGCTGATGT
ACGCGGCGTGCATCACCCGCCTCGATGTGGCATACCCGGTGCGGAGCCTG
GCACGCTATGCAGCAGCGCCGACGGCGGCGCATATGATGACAGCGAAGCG
CGTGCTGCGGTACCTTATCGGGACGCCAACGCTGGGGCTGCTCTACTACC
GGCAGCCAGCAGCGGCGACGGCGACACGACGGCGGCAGCATCACTGGAGC
TGGTGGGCTACATCGACGCAAATCTCGCAGGATGCTTGGACAGCGGCCGC
TCCACGACTGGCGGCCTGTTTCTGGTAGCGGGCGGCGTCGTGGCTTTCTC
ATCTCGGCTGCAGCAGTCGGTGGCGCGATCGACGATGGAGAGCGAGTACA
TGGCGCTCTTCGACGCGGCACAGGAAGCGGAGCAGCTGCGGACGCTGCTG
GCTCATCTGGGCTTGGAGCAGACTGCGCCAACGGTTATCCACGAGGACAA
CACAGCGGCGCTGGCGGTGACGATGGCGGCTGGACACACGCACCAGTCGC
GCCACATCCGCATCCGCTTCGCGCGGGAGCTGGTGGCGGCGGGCGTAATC
GCCGTGGAGCAGGTCAGCACGGCTGACCAGCTGGCCGATGGTCTGACAAA
GAATGTCGGGCAAGAGCGGCTGCTGGCGCTTCGGGCTCGCACGATGGGAT
AA
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