mRNA_P-wetherbeei_contig7523.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7523.1.1
Unique NamemRNA_P-wetherbeei_contig7523.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7523.1.1 vs. uniprot
Match: A0A835ZBQ5_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.440e-8
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 2 
Query:  485 RRNCDHCVAKKVKCSGEAPCVACTRKFVTCVFSIKKRPGPRMR 613
            R+NCD CVA+K+KC G  PC  C RK + C +S K++PGP++R
Sbjct:  238 RKNCDGCVARKIKCDGLLPCCMCARKHLVCAYSYKQKPGPKVR 280
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BLAST of mRNA_P-wetherbeei_contig7523.1.1 vs. uniprot
Match: A0A6H5J8Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Q7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.410e-7
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 2 
Query:  467 KPEPLTRRNCDHCVAKKVKCSGE---APCVACTRKFVTCVFSIKKRPGPR 607
            +P   TRRNCD+CV KKV+CSG      C  C RK   C+FS+K++PGP+
Sbjct:    2 EPRSNTRRNCDYCVEKKVRCSGRIEGGACHYCARKDHVCIFSLKQKPGPK 51
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BLAST of mRNA_P-wetherbeei_contig7523.1.1 vs. uniprot
Match: D7FYM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYM9_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 5.980e-7
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 
Query:  470 PEPLTRRNCDHCVAKKVKCSGE---APCVACTRKFVTCVFSIKKRPGPR 607
            P   TRRNCD+CV KKV+CSG      C  C RK   CVFS+K++PGP+
Sbjct:    3 PRSNTRRNCDYCVEKKVRCSGRIEGGACHYCARKDHVCVFSLKQKPGPK 51
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7523.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZBQ5_9STRA9.440e-853.49Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5J8Q7_9PHAE1.410e-752.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYM9_ECTSI5.980e-755.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7523contigP-wetherbeei_contig7523:183..1223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog340170.XP_007372799.1
PFAMsFungal_trans,Zn_clus
Model size628
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.19e-07
EggNOG OGs28PB7@1|root,2QVYJ@2759|Eukaryota,38N2Q@33154|Opisthokonta,3NZQV@4751|Fungi,3QSXK@4890|Ascomycota,3RW1W@4891|Saccharomycetes,47E4E@766764|Debaryomycetaceae
DescriptionFungal specific transcription factor domain
Cds size273
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.245662-CDS-P-wetherbeei_contig7523:182..3471683186986.245662-CDS-P-wetherbeei_contig7523:182..347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7523 183..347 -
1683186986.2568493-CDS-P-wetherbeei_contig7523:760..8681683186986.2568493-CDS-P-wetherbeei_contig7523:760..868Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7523 761..868 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.2709174-UTR-P-wetherbeei_contig7523:868..12231683186986.2709174-UTR-P-wetherbeei_contig7523:868..1223Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7523 869..1223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7523.1.1prot_P-wetherbeei_contig7523.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7523 183..868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7523.1.1

>prot_P-wetherbeei_contig7523.1.1 ID=prot_P-wetherbeei_contig7523.1.1|Name=mRNA_P-wetherbeei_contig7523.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MFPFIIRCSVVSPVTYGCAVRRGGLLVTGHGAAFPDDKPEPLTRRNCDHC
VAKKVKCSGEAPCVACTRKFVTCVFSIKKRPGPRMRNKRAT
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mRNA from alignment at P-wetherbeei_contig7523:183..1223-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7523.1.1 ID=mRNA_P-wetherbeei_contig7523.1.1|Name=mRNA_P-wetherbeei_contig7523.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1041bp|location=Sequence derived from alignment at P-wetherbeei_contig7523:183..1223- (Phaeothamnion wetherbeei SAG_119_79)
CTTTATACACTGCGTCTCCATAACATCACTCGTAAATAAATCCTCGAGAA
AGTTGATGCAATGCGATCGCTCGACGAAGCACACGAGGTGAGAGAGGAGG
GGGAGAAGATGTGGCTAAGAGCGAAATCGTGGCGTCCGCGCCCGCCTAGG
CTTCTGGACGCCCTCAACGTGCAACGCTGCGCCCTCTCGTACGATTCCTG
TGTAGTTTAATGCCGGCATCGGCGTTCCCAATTTGTTCTATTCTTGCACT
TAGGCGCCGGGGAGTGATTACGAAGTGTTTTGGTCATGTTGTTCGGAGCA
AGAGGGACGCCAGAAGGACTGCTTGGCGGCAATTCGTAGCAATCTTCTCT
CGACCATGTTTCCCTTTATTATACGGTGTAGTGTAGTCAGTCCCGTCACC
TATGGTTGTGCGGTGCGGCGAGGCGGACTTCTCGTGACGGGCCACGGAGC
AGCTTTCCCAGATGTTCGAAAGGCGTTCCTTCACTGGAAATCGCGCGCGA
TGGTTCTTGAGACGGTTTCTCTTTGTTCCTCGTGCCATGGTCCGCTCTGA
CGGACGCCGTGCTGCCATGCCTGCATGGCTGGGCGAACGCCAAACCCAAA
CTGAGAAACTGAACAGCTTCTTTGGCAGCGGTTGGGGAAGTTGCAACCGC
CTTCCTCTTTTGATGGTGCAAGGTTCAGGCTCTATCTTATGCCAGAACCA
GCATCCTCCCCATCCGCGTCTCCGTTTCTCCGGGGTGCCCACCCACGCCA
CGCTCGACACCCTCTCCCTCAGCTAACCACCGCTTCCCCCCACCTTTGCC
GCTGCTGTCCCATCGGCTGCTATCCGCTCTCTCCGACCCAATCCGGCTGC
CGTCTTTCCTGACAACGCCTTGGCAGGACAAGCCGGAGCCGCTCACGCGG
CGCAACTGTGACCATTGCGTCGCCAAGAAGGTCAAGTGCAGCGGCGAGGC
ACCCTGCGTCGCATGCACGCGCAAGTTTGTGACATGCGTCTTCTCCATCA
AGAAGCGACCGGGCCCACGGATGCGCAACAAGCGCGCCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7523:183..1223-

>mRNA_P-wetherbeei_contig7523.1.1 ID=mRNA_P-wetherbeei_contig7523.1.1|Name=mRNA_P-wetherbeei_contig7523.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig7523:183..1223- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTCCCTTTATTATACGGTGTAGTGTAGTCAGTCCCGTCACCTATGG
TTGTGCGGTGCGGCGAGGCGGACTTCTCGTGACGGGCCACGGAGCAGCTT
TCCCAGATGACAAGCCGGAGCCGCTCACGCGGCGCAACTGTGACCATTGC
GTCGCCAAGAAGGTCAAGTGCAGCGGCGAGGCACCCTGCGTCGCATGCAC
GCGCAAGTTTGTGACATGCGTCTTCTCCATCAAGAAGCGACCGGGCCCAC
GGATGCGCAACAAGCGCGCCACC
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