mRNA_P-wetherbeei_contig7517.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7517.1.1
Unique NamemRNA_P-wetherbeei_contig7517.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7517.1.1 vs. uniprot
Match: B7FNS0_PHATC (Ribonuclease P n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FNS0_PHATC)

HSP 1 Score: 62.8 bits (151), Expect = 1.990e-6
Identity = 32/101 (31.68%), Postives = 54/101 (53.47%), Query Frame = 2 
Query: 1340 MMREWERQGKIFAVPDAFHDDWFWMYGTVAIDDGPGSLALSNDQVRNHGLSERLKPSLLARWRSTHLARFHFETPWERLERPEKEFRPQLLWPEPLAMRVQ 1642
            +++ W     ++  P   +DDWFWM+   A+  GPG+L ++ND++R+H      + S L RW+  H  RF     WE   +   + R  L++PE  + R+Q
Sbjct:  498 LIQSWLDNDVLYRTPPGMNDDWFWMH--AALYAGPGTLVVTNDEMRDHHFQMLARRSFL-RWKDRHQVRFSLGA-WESFVQGRHQRRVNLIYPEVYSRRIQ 594
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BLAST of mRNA_P-wetherbeei_contig7517.1.1 vs. uniprot
Match: A0A1Z5K6J9_FISSO (Ribonuclease P n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6J9_FISSO)

HSP 1 Score: 60.5 bits (145), Expect = 1.000e-5
Identity = 33/104 (31.73%), Postives = 55/104 (52.88%), Query Frame = 2 
Query: 1331 VQVMMREWERQGKIFAVPDAFHDDWFWMYGTVAIDDGPGSLALSNDQVRNHGLSERLKPSLLARWRSTHLARFHFETPWERLERPEKEFRPQLLWPEPLAMRVQ 1642
            VQ +++ W   G ++  P   +DDWFWM   +    GPG+L L+ND++R+H   + L P    RW+  H  + HF+    + +  E+     L +PE  + R+Q
Sbjct:  462 VQPLVQRWMDHGLLYQTPRDMNDDWFWMQAALVA--GPGTLVLTNDEMRDHHF-QMLAPRSFLRWKDRH--QVHFQLGAWKHDGKERRRELILTYPEIYSRRIQ 560
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BLAST of mRNA_P-wetherbeei_contig7517.1.1 vs. uniprot
Match: A0A1Z5JIF4_FISSO (Ribonuclease P n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIF4_FISSO)

HSP 1 Score: 58.5 bits (140), Expect = 3.990e-5
Identity = 35/106 (33.02%), Postives = 55/106 (51.89%), Query Frame = 2 
Query: 1331 VQVMMREWERQGKIFAVPDAFHDDWFWMYGTVAIDDGPGSLALSNDQVRNHGLSERLKPSLLARWRSTHLARFHFETPWERLERPEKEFRPQLL--WPEPLAMRVQ 1642
            V+ +++ W   G ++  P   +DDWFWM   +    GPG+L L+ND++R+H   + L P    RW+  H   F     W+    P  E R +LL  +PE  + R+Q
Sbjct:  469 VRPLVQRWMDWGILYQTPRDMNDDWFWMQAALVA--GPGTLVLTNDEMRDHHF-QMLAPRSFLRWKDRHQVHFQLGA-WK----PGGEKRRELLLTYPEIYSRRIQ 566
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BLAST of mRNA_P-wetherbeei_contig7517.1.1 vs. uniprot
Match: F0XWY5_AURAN (Ribonuclease P n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWY5_AURAN)

HSP 1 Score: 57.8 bits (138), Expect = 7.090e-5
Identity = 39/141 (27.66%), Postives = 63/141 (44.68%), Query Frame = 2 
Query: 1295 ALYIRQRQPGTEVQVMMREWERQGKIFAVPDAFHDDWFWMYGTVAIDDGPGSLALSNDQVRNHGLSERLKPSLLARWRSTHLARFHFETPWERLERPEKEFRPQLLWPEPLAMRVQG-------ARWHXXXXXXXXEASPA 1696
            A +++  +     + ++  W R   +++     +DDW+W+Y  VA   GPGSL +SND++R+H        + L  W+  HLA+F     W R    +         P P ++R Q        ARWH         A+PA
Sbjct:  466 ARHLQDDRLPASARPVLHAWRRSKSLYSCALRNNDDWYWLYAAVAA--GPGSLLVSNDEMRDHHFGMLSARAFLV-WKERHLAKFELGG-WRRDGGRDVTIHD----PPPFSVRAQRNDPGEALARWHLPALPPPPAAAPA 598
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BLAST of mRNA_P-wetherbeei_contig7517.1.1 vs. uniprot
Match: A0A7S0LY20_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LY20_9CRYP)

HSP 1 Score: 53.5 bits (127), Expect = 9.820e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 2 
Query:  833 PP--TVIVDGPNVAYHKQNLAHGTFSFPALVAIVAELERRGETVLVIMPRRF 982
            PP  TVIVDGPNVAY +QN   G FS+  +  ++A L   GE VL+++P ++
Sbjct:    7 PPDFTVIVDGPNVAYARQNFVGGGFSYHQIDLVIAGLRAEGERVLLVLPHKY 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7517.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
B7FNS0_PHATC1.990e-631.68Ribonuclease P n=1 Tax=Phaeodactylum tricornutum (... [more]
A0A1Z5K6J9_FISSO1.000e-531.73Ribonuclease P n=1 Tax=Fistulifera solaris TaxID=1... [more]
A0A1Z5JIF4_FISSO3.990e-533.02Ribonuclease P n=1 Tax=Fistulifera solaris TaxID=1... [more]
F0XWY5_AURAN7.090e-527.66Ribonuclease P n=1 Tax=Aureococcus anophagefferens... [more]
A0A7S0LY20_9CRYP9.820e-548.08Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7517contigP-wetherbeei_contig7517:462..2746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNA1
Model size2285
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.31e-10
EggNOG OGsCOG0534@1|root,KOG1347@2759|Eukaryota
Ec32 ortholog descriptionZc3h12a-like Ribonuclease NYN domain protein
Ec32 orthologEc-15_003520.1
Descriptionantiporter activity
Cds size1992
COG categoryV
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.7948058-UTR-P-wetherbeei_contig7517:461..5491683186985.7948058-UTR-P-wetherbeei_contig7517:461..549Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7517 462..549 +
1683186985.8155541-UTR-P-wetherbeei_contig7517:2541..27461683186985.8155541-UTR-P-wetherbeei_contig7517:2541..2746Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7517 2542..2746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.806244-CDS-P-wetherbeei_contig7517:549..25411683186985.806244-CDS-P-wetherbeei_contig7517:549..2541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7517 550..2541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7517.1.1prot_P-wetherbeei_contig7517.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7517 550..2541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7517.1.1

>prot_P-wetherbeei_contig7517.1.1 ID=prot_P-wetherbeei_contig7517.1.1|Name=mRNA_P-wetherbeei_contig7517.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=664bp
MARAVERCLKLVSEASSELPGGPCFRTYKPLLEELIARRDVAGAARVCEH
MRLNNAPMRADFSAGLVDLFGGGAGGDGMPRGDTKGGDRWRQRNVDGESG
DVSGEGGIVSGGADAVAGGNSSDSTETSSAAGGGGGNSSGAAVVAERSGG
GPVHAEALAALLDDMAQLDIEPVPAFIDTLAARGLAVRAQAVDKNVCSAC
GGALLPSPLLPAERAQVRAALMEQVGQQSKGAALALEAFGAHLQTMERPP
TVIVDGPNVAYHKQNLAHGTFSFPALVAIVAELERRGETVLVIMPRRFGL
GGHFLLPPRRLRGAYAVRVAEGAKAAAAAAAAASATRDVVAALKSAAGGS
SNSTSSSSGDDSDERLANNGGGGSSAGSRSGESFLREMVGAGSTPVFKGS
SGALYIRQRQPGTEVQVMMREWERQGKIFAVPDAFHDDWFWMYGTVAIDD
GPGSLALSNDQVRNHGLSERLKPSLLARWRSTHLARFHFETPWERLERPE
KEFRPQLLWPEPLAMRVQGARWHWHVPVPLPEASPAGASASGGVAAMADA
GGNAEGGDENDGKEDDVGNDGGGGGRDDFPATDGAGAGAASDAPQAVREW
MCVNLPPSTMPAVAAGPPLPMSAAALRRCTNAELRLELVRRRLDAKGKKE
KLVQRLMQSMCKG*
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mRNA from alignment at P-wetherbeei_contig7517:462..2746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7517.1.1 ID=mRNA_P-wetherbeei_contig7517.1.1|Name=mRNA_P-wetherbeei_contig7517.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2285bp|location=Sequence derived from alignment at P-wetherbeei_contig7517:462..2746+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCGGGACTTTTGCCGCCACCGCCAGTGAGGCTGCTGCCGCCGAGTCCG
CCGCTGCGGAAGAAGACGCTGCGGCGGACGCCGCCGCTATGGCACGGGCC
GTGGAACGCTGCCTGAAGCTCGTGAGCGAGGCGAGCTCCGAGCTCCCCGG
CGGGCCCTGCTTCCGCACCTACAAGCCGCTCCTGGAGGAGCTGATCGCGC
GGCGCGATGTCGCCGGCGCGGCCCGCGTCTGCGAGCACATGCGGCTGAAC
AACGCACCGATGCGGGCGGACTTCAGCGCCGGTCTCGTAGACCTTTTTGG
CGGCGGCGCCGGCGGCGATGGCATGCCGCGAGGCGATACAAAAGGCGGGG
ACAGATGGAGACAAAGAAACGTAGACGGAGAAAGTGGCGACGTTAGCGGC
GAAGGCGGCATTGTCAGCGGCGGCGCTGACGCCGTTGCCGGCGGGAACAG
CAGCGACAGCACAGAAACCAGCAGCGCGGCAGGCGGTGGCGGCGGCAACA
GCAGCGGTGCAGCAGTAGTAGCAGAGCGCAGCGGTGGCGGCCCGGTGCAC
GCGGAGGCGCTGGCGGCGCTGCTCGATGACATGGCCCAGCTGGACATCGA
GCCGGTGCCGGCCTTCATCGACACGCTGGCCGCCCGCGGGCTGGCGGTGC
GGGCGCAGGCCGTCGACAAGAACGTCTGCAGCGCCTGCGGTGGGGCGCTG
CTCCCGTCGCCGCTGCTGCCGGCGGAGCGGGCGCAGGTGCGAGCGGCCCT
GATGGAGCAAGTTGGGCAGCAGAGCAAGGGGGCAGCGCTGGCGCTGGAGG
CGTTCGGGGCGCACCTGCAAACGATGGAACGGCCGCCGACGGTCATTGTG
GACGGTCCGAACGTCGCCTACCACAAGCAGAACCTCGCCCACGGCACCTT
CAGCTTCCCAGCGCTGGTGGCCATCGTCGCGGAGCTGGAGCGGCGCGGTG
AGACGGTGCTCGTGATCATGCCGCGCCGGTTCGGCCTGGGCGGCCACTTC
CTCCTCCCGCCGCGGCGCCTCCGCGGCGCGTACGCAGTCCGCGTGGCCGA
GGGCGCCAAGGCGGCGGCGGCGGCAGCTGCAGCGGCCTCGGCGACGAGAG
ATGTCGTGGCCGCATTGAAATCAGCGGCCGGCGGTAGCAGCAACAGCACC
AGCAGCAGCAGCGGCGACGACAGCGACGAGCGGTTGGCCAATAACGGCGG
CGGCGGCAGCAGCGCTGGCAGCAGGAGCGGCGAGTCGTTTCTGAGAGAGA
TGGTCGGCGCCGGGAGCACGCCGGTCTTCAAGGGCAGCTCAGGCGCGCTC
TACATCCGGCAGCGGCAGCCCGGAACTGAGGTGCAAGTCATGATGCGTGA
GTGGGAGCGACAGGGCAAGATCTTTGCGGTGCCCGACGCCTTCCACGACG
ACTGGTTCTGGATGTATGGGACAGTGGCAATAGACGACGGCCCCGGCTCC
CTCGCCCTCAGCAACGACCAGGTGCGCAACCACGGGCTCAGCGAACGGCT
CAAGCCGTCGCTGTTGGCGCGTTGGCGGTCGACGCACTTGGCGCGCTTCC
ACTTCGAGACGCCGTGGGAGCGGCTGGAGCGACCCGAGAAGGAGTTTCGG
CCGCAGCTGCTCTGGCCCGAGCCACTGGCGATGCGAGTGCAGGGCGCCCG
CTGGCACTGGCATGTCCCGGTGCCGCTGCCGGAGGCCTCGCCTGCCGGCG
CCTCCGCCAGCGGTGGCGTAGCCGCCATGGCCGACGCCGGCGGCAATGCC
GAGGGCGGCGATGAGAATGACGGGAAGGAGGATGACGTCGGCAACGATGG
CGGCGGCGGCGGCAGAGACGACTTTCCCGCTACCGATGGGGCTGGGGCCG
GCGCCGCGTCCGATGCACCACAGGCAGTACGGGAGTGGATGTGCGTTAAT
CTGCCGCCGTCAACGATGCCGGCAGTCGCTGCCGGGCCGCCGCTGCCTAT
GTCGGCTGCGGCGCTACGTCGGTGCACCAACGCGGAGCTGCGGCTGGAGT
TGGTGCGGCGCCGCTTGGACGCGAAGGGGAAGAAAGAGAAGTTGGTGCAG
CGGCTCATGCAATCGATGTGCAAGGGGTAGGCGCGGCGAATAGCTGTTGC
GGCTTTCGGGAGGGGAAGTGAAGACCCAGGCAGTGAGTGGTTTGTTGATC
GGTGTCGGCACTTTTAAGGCGATCACAACGGCATACACAACACATAGTGA
GGTGGAGAGGGTTGGCATAATGGGAAACGAGCGCCGAACAGAGAGGGGTA
CGACCAGAGAAGCGATTTCAGAACAAGGAATAACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7517:462..2746+

>mRNA_P-wetherbeei_contig7517.1.1 ID=mRNA_P-wetherbeei_contig7517.1.1|Name=mRNA_P-wetherbeei_contig7517.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1992bp|location=Sequence derived from alignment at P-wetherbeei_contig7517:462..2746+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACGGGCCGTGGAACGCTGCCTGAAGCTCGTGAGCGAGGCGAGCTC
CGAGCTCCCCGGCGGGCCCTGCTTCCGCACCTACAAGCCGCTCCTGGAGG
AGCTGATCGCGCGGCGCGATGTCGCCGGCGCGGCCCGCGTCTGCGAGCAC
ATGCGGCTGAACAACGCACCGATGCGGGCGGACTTCAGCGCCGGTCTCGT
AGACCTTTTTGGCGGCGGCGCCGGCGGCGATGGCATGCCGCGAGGCGATA
CAAAAGGCGGGGACAGATGGAGACAAAGAAACGTAGACGGAGAAAGTGGC
GACGTTAGCGGCGAAGGCGGCATTGTCAGCGGCGGCGCTGACGCCGTTGC
CGGCGGGAACAGCAGCGACAGCACAGAAACCAGCAGCGCGGCAGGCGGTG
GCGGCGGCAACAGCAGCGGTGCAGCAGTAGTAGCAGAGCGCAGCGGTGGC
GGCCCGGTGCACGCGGAGGCGCTGGCGGCGCTGCTCGATGACATGGCCCA
GCTGGACATCGAGCCGGTGCCGGCCTTCATCGACACGCTGGCCGCCCGCG
GGCTGGCGGTGCGGGCGCAGGCCGTCGACAAGAACGTCTGCAGCGCCTGC
GGTGGGGCGCTGCTCCCGTCGCCGCTGCTGCCGGCGGAGCGGGCGCAGGT
GCGAGCGGCCCTGATGGAGCAAGTTGGGCAGCAGAGCAAGGGGGCAGCGC
TGGCGCTGGAGGCGTTCGGGGCGCACCTGCAAACGATGGAACGGCCGCCG
ACGGTCATTGTGGACGGTCCGAACGTCGCCTACCACAAGCAGAACCTCGC
CCACGGCACCTTCAGCTTCCCAGCGCTGGTGGCCATCGTCGCGGAGCTGG
AGCGGCGCGGTGAGACGGTGCTCGTGATCATGCCGCGCCGGTTCGGCCTG
GGCGGCCACTTCCTCCTCCCGCCGCGGCGCCTCCGCGGCGCGTACGCAGT
CCGCGTGGCCGAGGGCGCCAAGGCGGCGGCGGCGGCAGCTGCAGCGGCCT
CGGCGACGAGAGATGTCGTGGCCGCATTGAAATCAGCGGCCGGCGGTAGC
AGCAACAGCACCAGCAGCAGCAGCGGCGACGACAGCGACGAGCGGTTGGC
CAATAACGGCGGCGGCGGCAGCAGCGCTGGCAGCAGGAGCGGCGAGTCGT
TTCTGAGAGAGATGGTCGGCGCCGGGAGCACGCCGGTCTTCAAGGGCAGC
TCAGGCGCGCTCTACATCCGGCAGCGGCAGCCCGGAACTGAGGTGCAAGT
CATGATGCGTGAGTGGGAGCGACAGGGCAAGATCTTTGCGGTGCCCGACG
CCTTCCACGACGACTGGTTCTGGATGTATGGGACAGTGGCAATAGACGAC
GGCCCCGGCTCCCTCGCCCTCAGCAACGACCAGGTGCGCAACCACGGGCT
CAGCGAACGGCTCAAGCCGTCGCTGTTGGCGCGTTGGCGGTCGACGCACT
TGGCGCGCTTCCACTTCGAGACGCCGTGGGAGCGGCTGGAGCGACCCGAG
AAGGAGTTTCGGCCGCAGCTGCTCTGGCCCGAGCCACTGGCGATGCGAGT
GCAGGGCGCCCGCTGGCACTGGCATGTCCCGGTGCCGCTGCCGGAGGCCT
CGCCTGCCGGCGCCTCCGCCAGCGGTGGCGTAGCCGCCATGGCCGACGCC
GGCGGCAATGCCGAGGGCGGCGATGAGAATGACGGGAAGGAGGATGACGT
CGGCAACGATGGCGGCGGCGGCGGCAGAGACGACTTTCCCGCTACCGATG
GGGCTGGGGCCGGCGCCGCGTCCGATGCACCACAGGCAGTACGGGAGTGG
ATGTGCGTTAATCTGCCGCCGTCAACGATGCCGGCAGTCGCTGCCGGGCC
GCCGCTGCCTATGTCGGCTGCGGCGCTACGTCGGTGCACCAACGCGGAGC
TGCGGCTGGAGTTGGTGCGGCGCCGCTTGGACGCGAAGGGGAAGAAAGAG
AAGTTGGTGCAGCGGCTCATGCAATCGATGTGCAAGGGGTAG
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