mRNA_P-wetherbeei_contig751.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig751.2.1
Unique NamemRNA_P-wetherbeei_contig751.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig751.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig751contigP-wetherbeei_contig751:5110..6297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1189
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-14_005750.1
Cds size876
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.6495411-CDS-P-wetherbeei_contig751:5109..59851683186985.6495411-CDS-P-wetherbeei_contig751:5109..5985Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig751 5110..5985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.6602952-UTR-P-wetherbeei_contig751:5985..62971683186985.6602952-UTR-P-wetherbeei_contig751:5985..6297Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig751 5986..6297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig751.2.1prot_P-wetherbeei_contig751.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig751 5110..5985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig751.2.1

>prot_P-wetherbeei_contig751.2.1 ID=prot_P-wetherbeei_contig751.2.1|Name=mRNA_P-wetherbeei_contig751.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=292bp
MHSFEKAIPFRSMNFNDQCCRLDHVVGERHNAEQHSLVFRCEVSGNLFCV
NCAKDIFFSQIPDHQRRGILLGFHRLLEANGVHGLPADFLSTVLPALLSA
LESADPTLSALAVEVLQPPATADAPNDFGGGGSGHSGGSQFDVAVALPLA
ERMAAIGLPRAAPHLFLLARIMSGAGPEERLGPAAARAAPFLAAALAGDA
ARSLSEEIKSHVLFLALELLEPRLDDDNATATAAATGGTAAVGGAGAAAA
AAAAGPAGDPFVQIMLRVPAVLAAAARPDTQTHAVDYLAAAS
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mRNA from alignment at P-wetherbeei_contig751:5110..6297-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig751.2.1 ID=mRNA_P-wetherbeei_contig751.2.1|Name=mRNA_P-wetherbeei_contig751.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1188bp|location=Sequence derived from alignment at P-wetherbeei_contig751:5110..6297- (Phaeothamnion wetherbeei SAG_119_79)
CCAGAGGCAGCTCAAATTCGCGTTACTCGTTGCCTTTTGCTAAAGCTGCG
ATGCTTTGAGGTTCGTGAACGCGGCGCGTGTCGTCAATACCACCTTCGCA
CGTTTCTCGTCCCATCTTGCCCGCGGCCTGGGTCACTTCGTTCCCAAAAC
GGCTTCTGGTTTTTGCGCGCTTTCTTTCTCACCTTCGGCTGGGCCTCATT
GCTCATAATGTCGGCGCGCTTTCTATCTTCAATTTTCAAGGTCAAAAACT
CATGAGGCGCGGCATTCCGGACGCTATCCATCCCTCAGGAATGCAAGGCT
CCGTACAAGTGTATGCATTCGTTTGAAAAAGCTATTCCGTTCCGCAGCAT
GAATTTCAACGATCAATGCTGTCGCCTCGACCACGTCGTCGGCGAAAGAC
ACAATGCCGAGCAGCACTCGCTCGTGTTTCGCTGCGAGGTCTCTGGCAAC
CTCTTCTGTGTGAACTGCGCCAAAGACATCTTCTTCTCGCAGATTCCGGA
CCATCAGCGACGCGGCATCTTGCTCGGCTTCCATCGGCTGCTGGAAGCCA
ATGGCGTCCATGGACTGCCGGCGGACTTCCTGTCTACGGTGCTCCCAGCA
TTGCTGTCTGCGCTGGAATCCGCCGACCCCACGTTGTCTGCGCTCGCCGT
TGAAGTTCTCCAGCCTCCGGCGACCGCCGATGCGCCAAACGACTTTGGCG
GCGGCGGCAGCGGCCACAGCGGCGGCAGCCAGTTCGATGTTGCGGTAGCC
CTTCCGCTAGCCGAGCGCATGGCCGCGATCGGACTGCCTCGCGCTGCGCC
GCACCTCTTCCTGCTGGCACGTATCATGTCCGGCGCCGGCCCGGAGGAGC
GGCTCGGGCCGGCCGCCGCCCGTGCGGCCCCGTTCTTGGCGGCGGCGCTT
GCCGGCGACGCTGCCCGCTCCCTCAGCGAAGAAATCAAGTCGCACGTTTT
GTTTCTGGCCCTGGAGCTGCTGGAACCGCGCCTCGATGACGACAATGCAA
CGGCGACGGCGGCGGCAACTGGCGGGACAGCAGCAGTGGGCGGCGCGGGC
GCGGCGGCAGCAGCGGCAGCGGCGGGACCCGCTGGCGACCCGTTCGTGCA
GATCATGCTGCGCGTCCCGGCGGTGCTGGCGGCGGCCGCCCGCCCCGACA
CGCAGACGCACGCCGTTGACTACCTCGCGGCGGCCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig751:5110..6297-

>mRNA_P-wetherbeei_contig751.2.1 ID=mRNA_P-wetherbeei_contig751.2.1|Name=mRNA_P-wetherbeei_contig751.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=876bp|location=Sequence derived from alignment at P-wetherbeei_contig751:5110..6297- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATTCGTTTGAAAAAGCTATTCCGTTCCGCAGCATGAATTTCAACGA
TCAATGCTGTCGCCTCGACCACGTCGTCGGCGAAAGACACAATGCCGAGC
AGCACTCGCTCGTGTTTCGCTGCGAGGTCTCTGGCAACCTCTTCTGTGTG
AACTGCGCCAAAGACATCTTCTTCTCGCAGATTCCGGACCATCAGCGACG
CGGCATCTTGCTCGGCTTCCATCGGCTGCTGGAAGCCAATGGCGTCCATG
GACTGCCGGCGGACTTCCTGTCTACGGTGCTCCCAGCATTGCTGTCTGCG
CTGGAATCCGCCGACCCCACGTTGTCTGCGCTCGCCGTTGAAGTTCTCCA
GCCTCCGGCGACCGCCGATGCGCCAAACGACTTTGGCGGCGGCGGCAGCG
GCCACAGCGGCGGCAGCCAGTTCGATGTTGCGGTAGCCCTTCCGCTAGCC
GAGCGCATGGCCGCGATCGGACTGCCTCGCGCTGCGCCGCACCTCTTCCT
GCTGGCACGTATCATGTCCGGCGCCGGCCCGGAGGAGCGGCTCGGGCCGG
CCGCCGCCCGTGCGGCCCCGTTCTTGGCGGCGGCGCTTGCCGGCGACGCT
GCCCGCTCCCTCAGCGAAGAAATCAAGTCGCACGTTTTGTTTCTGGCCCT
GGAGCTGCTGGAACCGCGCCTCGATGACGACAATGCAACGGCGACGGCGG
CGGCAACTGGCGGGACAGCAGCAGTGGGCGGCGCGGGCGCGGCGGCAGCA
GCGGCAGCGGCGGGACCCGCTGGCGACCCGTTCGTGCAGATCATGCTGCG
CGTCCCGGCGGTGCTGGCGGCGGCCGCCCGCCCCGACACGCAGACGCACG
CCGTTGACTACCTCGCGGCGGCCAGC
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