mRNA_P-wetherbeei_contig75.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig75.6.1
Unique NamemRNA_P-wetherbeei_contig75.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig75.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig75contigP-wetherbeei_contig75:11384..13406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size715
Hectar predicted targeting categoryother localisation
Exons4
Cds size465
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig75.6.1prot_P-wetherbeei_contig75.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig75 11403..13175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.2004104-UTR-P-wetherbeei_contig75:11383..114021683186985.2004104-UTR-P-wetherbeei_contig75:11383..11402Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig75 11384..11402 +
1683186985.2490172-UTR-P-wetherbeei_contig75:13175..134061683186985.2490172-UTR-P-wetherbeei_contig75:13175..13406Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig75 13176..13406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186985.209887-CDS-P-wetherbeei_contig75:11402..114711683186985.209887-CDS-P-wetherbeei_contig75:11402..11471Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig75 11403..11471 +
1683186985.2191756-CDS-P-wetherbeei_contig75:11947..120641683186985.2191756-CDS-P-wetherbeei_contig75:11947..12064Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig75 11948..12064 +
1683186985.2296221-CDS-P-wetherbeei_contig75:12479..125931683186985.2296221-CDS-P-wetherbeei_contig75:12479..12593Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig75 12480..12593 +
1683186985.240935-CDS-P-wetherbeei_contig75:13010..131751683186985.240935-CDS-P-wetherbeei_contig75:13010..13175Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig75 13011..13175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig75.6.1

>prot_P-wetherbeei_contig75.6.1 ID=prot_P-wetherbeei_contig75.6.1|Name=mRNA_P-wetherbeei_contig75.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
MRTKLIVQRAAHGVAEAEDKLTKLKRQFLRAAAEEQNVLATLQRATRDSR
VNRFDLDRLHRKALEAAGRVRGLEETANQARERVLGLMIKRDEALQFASQ
EFEASERERCTLVAQSLKTFVQIQRDHLVEQLSALDTFAGFLEPLAPDVR
VDVA*
back to top

mRNA from alignment at P-wetherbeei_contig75:11384..13406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig75.6.1 ID=mRNA_P-wetherbeei_contig75.6.1|Name=mRNA_P-wetherbeei_contig75.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2023bp|location=Sequence derived from alignment at P-wetherbeei_contig75:11384..13406+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCAGGGGGAGCGCAACATGCGCACGAAACTCATCGTGCAGCGGGCCG
CCCACGGGGTCGCCGAGGCCGAGGACAAGCTCACCAAGGTGCGGTGCATA
TTCCGCGCTTCTTCGTGGTTTTGCGCTTCTCTAGTTGGTCGGCGGTCAGC
TGTTAGCGGCTGGCGGCGGCGGTCAGCGGTTAGCGGCTGGCGGCGGCGGT
CAGCGGTGAGCGAGACGCAGCGGCGGTCAGCGGTTAGCGGCTGGCGGCGG
CGGCGGCCAAGGTGGCGATAGAAAGGGTTTTGAGGGTCTGGGGCATATGC
TGTTGGAGGCTGCGTTTTCCCATGAATTTATTCCTTGGCGTCGATGGTTT
CATTCTCCAAGGCCTAGGTGGGGAATAAGTAAACGAAGCCTTGTCCGAAG
GCTGCCCTTTTTAGTCTACAGTGCTTCCTGTACTTTACGCGGAGTTGCCT
TTCTAGCTCACTCATCACATCGCAGCATAAATACTTTTTAATTGTCTTGT
ATCGGTTTCTAGTACACCCGCTCCTCCTGCCTCCATTGCATTTCCCTACA
TTCTTCCTCCTCAGCTGAAGCGGCAGTTTTTGCGCGCGGCGGCGGAGGAG
CAGAACGTGCTGGCGACGCTGCAACGCGCCACCCGCGACAGCCGCGTCAA
CCGCTTCGACCTCGACCGCCTCCACAGAAAGGCAAGTCAGTCCCTTTGTT
CAGTTCGTGCTTGCAGGATAGCCGTTCCGAATCAATAAGTGCCATCGGAG
CCGGTGCTCGGAGTTTCGAACCTTCAACGTGCTGTAGAGTCCGCGGAGGT
CACGGCTCTTTACATTGGCCTTTTAATCTTTGTCCTTTCTGCTTTCTGGG
TTTTCTCTCCGTCGGATTGCCGTTTCCTTTCTTTCTACGGCGGCGGAATG
ATGCAGTTTTCCCATCTTCGGCGCCACTGTGATTGTATTGTGTAGTGGGG
CGTTCACTGGCGGAAACTAGCGAGGTTTCTAACATGCATGCTGCCTACCT
TTTTCCTTGTATCCTATCCCTCTGTCTGTCTCCTTTCTGCCGCCCGGTCA
TTTCTACTTCTTCACGCCGAGATGGGCCTTTACGGAACTGCGGCAGGCGC
TTGAGGCGGCCGGGCGCGTCCGCGGCCTAGAGGAAACGGCAAACCAGGCG
CGGGAGCGCGTATTGGGCCTCATGATTAAGCGAGACGAGGCGCTGCAGTT
CGCCAGCCAGGTCCGTCGCGGCCGTTACAGCAGTTGCTGTGCGCCCCCGT
GGTATGTGTCTAACGCAGCGTCCTTCTTTTCGTCCGTTGCCGCTTTGTTT
GTCCGGTCTTGATGGAGTTGGTTCAGCCTCTGGCTATGCTGCGGTGGTGG
CTTCCTTCTTTTGTTCGTCTGATGAGTTGCCGCTCTTGTCATTCTTGGCT
GCATTTTTGGCTGTCCATAACATTCCTTCCAACAAGGCGGAATGCAAACC
TAGCGCATGAATTGGGCAGGCGTGGCTGATTGGACTGCCATCTGTTGCCT
GTCGCGCCAGCTTTCATGGCGCCCGCGTTTGGCGGCGGGAGCATTGCAGA
ATTCTGTATGGCAGAGCTTATATCTCACCAAACATACCCTCCTCTGTCTG
CGTACTTATCGTTGCGCGATGCTGCAGGAGTTCGAGGCGTCGGAGCGGGA
GCGGTGCACGCTGGTAGCGCAGAGCCTCAAGACCTTCGTGCAGATCCAGC
GGGACCACCTCGTCGAGCAGCTCTCGGCCCTCGACACCTTCGCCGGATTC
CTCGAGCCGCTGGCGCCCGACGTGAGAGTTGATGTGGCGTAGCATTTTTT
GGCGACGCGGTCGATTCATCCTCTTGGTGGTTGCCGTCCATTGTTTTTAG
ACCGCTTGTACCTTCCATGTCACCGTGGCCGGCAGTGACGTACAGCGCAG
TTGGTTTCTGCTGCACCTTTGCGCTGGCTAATGCTTTGCTTTGAATTTTG
TGAGGCAATACTGTAGCGCCTGAGATCCGATTTGCGATAACCATATCTAA
ACTTCCGCCCCTTCCATCTCCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig75:11384..13406+

>mRNA_P-wetherbeei_contig75.6.1 ID=mRNA_P-wetherbeei_contig75.6.1|Name=mRNA_P-wetherbeei_contig75.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig75:11384..13406+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCACGAAACTCATCGTGCAGCGGGCCGCCCACGGGGTCGCCGAGGC
CGAGGACAAGCTCACCAAGCTGAAGCGGCAGTTTTTGCGCGCGGCGGCGG
AGGAGCAGAACGTGCTGGCGACGCTGCAACGCGCCACCCGCGACAGCCGC
GTCAACCGCTTCGACCTCGACCGCCTCCACAGAAAGGCGCTTGAGGCGGC
CGGGCGCGTCCGCGGCCTAGAGGAAACGGCAAACCAGGCGCGGGAGCGCG
TATTGGGCCTCATGATTAAGCGAGACGAGGCGCTGCAGTTCGCCAGCCAG
GAGTTCGAGGCGTCGGAGCGGGAGCGGTGCACGCTGGTAGCGCAGAGCCT
CAAGACCTTCGTGCAGATCCAGCGGGACCACCTCGTCGAGCAGCTCTCGG
CCCTCGACACCTTCGCCGGATTCCTCGAGCCGCTGGCGCCCGACGTGAGA
GTTGATGTGGCGTAG
back to top