mRNA_P-wetherbeei_contig7490.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7490.1.1
Unique NamemRNA_P-wetherbeei_contig7490.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7490.1.1 vs. uniprot
Match: A0A6H5KPV9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPV9_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 8.000e-60
Identity = 91/141 (64.54%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    4 VFDGEEFGVAARLWTRGYDMYTPDKSIVGHDYDKVEGGPAPGSWNNNPIQHKQREQAYRRLKTMLHMKGGEDTPEAHAAIGKYGIGGRRTMEQYQRFVGVNLTTLEITGNRCGAIQWVPFEEEWPPTENNLGGPYWERRLA 426
            VFDGEEF + ARLWTRGYD YTPDKS+VGHDY+KV+ GP P SW NN +    ++ AY+R+ T+  M G  DT E   +IG+YG+G +RT+EQYQ F+GVNLTTLEI G+RCG + +VPFEE WPPTENNL GPYWERR A
Sbjct:  287 VFDGEEFSMHARLWTRGYDTYTPDKSLVGHDYNKVKEGPQPSSWLNNKMVAGAKDLAYKRMFTLFGMPGKVDTEEIWESIGQYGLGTKRTLEQYQEFIGVNLTTLEIMGSRCGTLTYVPFEETWPPTENNLAGPYWERRRA 427          
BLAST of mRNA_P-wetherbeei_contig7490.1.1 vs. uniprot
Match: A0A835ZER6_9STRA (GlcNAc-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER6_9STRA)

HSP 1 Score: 191 bits (485), Expect = 4.920e-56
Identity = 85/138 (61.59%), Postives = 108/138 (78.26%), Query Frame = 1
Query:    1 MVFDGEEFGVAARLWTRGYDMYTPDKSIVGHDYDKVEGGPAPGSWNNNPIQHKQREQAYRRLKTMLHMKGGEDTPEAHAAIGKYGIGGRRTMEQYQRFVGVNLTTLEITGNRCGAIQWVPFEEEWPPTENNLGGPYWE 414
            MVFDGEEF +AARLWTRGYD YTPD S++GHDY++   GP+PGSW +NP   +  ++A++RL+ +L + G E  PE   AIGKYG+G +R+ +Q+Q FVG N TTLEI  NRC +I WVP++EEWPPTENNLGGPYWE
Sbjct:  256 MVFDGEEFSMAARLWTRGYDFYTPDFSLIGHDYNRPTDGPSPGSWVSNPGLAEAGKKAHKRLRALLGILG-EPQPEGEDAIGKYGLGTKRSFQQFQEFVGANTTTLEILNNRCNSIAWVPYKEEWPPTENNLGGPYWE 392          
BLAST of mRNA_P-wetherbeei_contig7490.1.1 vs. uniprot
Match: A0A7S3UP91_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UP91_HETAK)

HSP 1 Score: 127 bits (318), Expect = 4.160e-34
Identity = 60/123 (48.78%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    4 VFDGEEFGVAARLWTRGYDMYTPDKSIVGHDYDKVEGGPAPGSWNNNPIQHKQREQAYRRLKTMLHMKGGEDTPEAHAAIGKYGIGGRRTMEQYQRFVGVNLTTLEITGNRCGAIQWVPFEEE 372
            +FDGEEF  +ARLWTRGYD YTP + +V HDY+K +    P  W NN  Q+K++++A  R +    ++  E T    AA+GKYG+G RR++ QY+ FVGV+L   E+  N CG +QWVPFEE+
Sbjct:   50 IFDGEEFSRSARLWTRGYDFYTPHRPVVVHDYNKPKDY-NPQGWRNNNQQNKEKDKARSRQRIFDLLEMPEGTSAGKAALGKYGLGDRRSLAQYEAFVGVSLKRREMLENHCGTLQWVPFEED 171          
BLAST of mRNA_P-wetherbeei_contig7490.1.1 vs. uniprot
Match: A0A7S3YLX0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLX0_HETAK)

HSP 1 Score: 117 bits (293), Expect = 5.320e-28
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    4 VFDGEEFGVAARLWTRGYDMYTPDKSIVGHDYDKVEGGPAPGSWNNNPIQHKQREQAYRRLKTMLHMKGGEDTPEAHAAIGKYGIGGRRTMEQYQRFVGVNLTTLEITGNRCGAIQWVPFEE 369
            +FDGEE+   ARLWTRGYD+YTP K+++ HDY+K +   A  SW      +K   +A  RL T+L M GGE+T EA +A+G+YG+G RR+++QY +F G ++       NRCG + WVPF E
Sbjct:  261 IFDGEEYSKGARLWTRGYDIYTPHKALIFHDYNKPKDYDAM-SWGRP---NKDFNRAKLRLFTLLEMLGGENTTEAISALGRYGLGDRRSLDQYIKFSGNDIRHRRALENRCGTLDWVPFPE 378          
BLAST of mRNA_P-wetherbeei_contig7490.1.1 vs. uniprot
Match: A0A7S3UUL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUL0_HETAK)

HSP 1 Score: 108 bits (270), Expect = 2.260e-25
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    4 VFDGEEFGVAARLWTRGYDMYTPDKSIVGHDYDKVEGGPAPGSWNNNPIQHKQREQAYRRLKTMLHMKGGEDTPEAHAAIGKYGIGGRRTMEQYQRFVGVNLTTLEITGNRCGAIQWVPFEEE 372
            +FDGEE+    RL+T GYDMYTP +S V HDY   +      +W+   ++  Q      R+ T+L M  G+ + EA A +GKYG+G +RT++QY  F GV++   +   N CG + WVPF+E+
Sbjct:   68 IFDGEEYTKGIRLFTHGYDMYTPHRSYVYHDYSHAKTDGRAHTWSRKTVKASQE-----RIMTLLEMNEGDKSAEAKAKLGKYGLGPKRTIDQYINFTGVDIRNRKSFANACGNVAWVPFQEK 185          
BLAST of mRNA_P-wetherbeei_contig7490.1.1 vs. uniprot
Match: I2CPM0_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPM0_NANGC)

HSP 1 Score: 106 bits (264), Expect = 3.500e-25
Identity = 55/126 (43.65%), Postives = 76/126 (60.32%), Query Frame = 1
Query:    4 VFDGEEFGVAARLWTRGYDMYTPDKSIVGHDYDKVEGGPAPGSWNNNPIQHKQREQAYRRLKTMLHMKGG---EDTPEAHAAIGKYGIGGRRTMEQYQRFVGVNLTTLEITGNRCGAIQWVPFEEE 372
            +FDGEEF   ARLWTRGYD+YTP +S+V HDY+      A  SW  +    K+ E++  RLK +L         +T EAHA + ++ +G RR++EQ  +F GV+    EI  + CG + WVPFE E
Sbjct:   98 LFDGEEFSKFARLWTRGYDVYTPHRSVVYHDYNHGPSTVAAASWTRDG---KELERSRNRLKVLLGDSTAPLARNTSEAHAFLARWDLGNRRSLEQLIQFTGVDTVNREILHSSCGYLAWVPFERE 220          
BLAST of mRNA_P-wetherbeei_contig7490.1.1 vs. uniprot
Match: F0Y7S9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7S9_AURAN)

HSP 1 Score: 108 bits (270), Expect = 8.300e-25
Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    4 VFDGEEFGVAARLWTRGYDMYTPDKSIVGHDYDKVEGGPAPGSWNN--------NPIQHKQREQAYRRLKTMLHMKGGEDTPEAHAAIGKYGIGGRRTMEQYQRFVGVNLTTLEITGNRCGAIQWVPF 363
            +F GEEF   AR +T GYD+YTP ++IV HDY   +G P+   WN         N     QR+ A RR+ T+L M GG+  P A   +G YG+G +R+++    F G+NL    I  NRCG I WVP+
Sbjct:  277 IFWGEEFSRTARFFTNGYDIYTPPRTIVAHDYKHTQGDPSHFKWNGKGGPRLNQNKTIVAQRDAANRRIWTLLGMPGGDPDPAARRRLGAYGLGDKRSLDDLVAFTGINLYNRTIGPNRCGNIDWVPW 404          
BLAST of mRNA_P-wetherbeei_contig7490.1.1 vs. uniprot
Match: A0A7S1Z148_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z148_TRICV)

HSP 1 Score: 106 bits (265), Expect = 2.440e-24
Identity = 59/127 (46.46%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    4 VFDGEEFGVAARLWTRGYDMYTPDKSIVGHDYDKVEGGPAPGSWNNNPIQHKQREQAYRRLKTMLHMKGGEDTPEAHAAI--GKYGIGGRRTMEQYQRFVGVNLTT--LEITG-NRCGAIQWVPFEE 369
            VFDGEEF  AAR WT GYD+YTP++  V HDY + +  P   SW+ N         +++RLKTML M  GE  P     +   K+G+G RR +EQ   F GV+L      I G NRCG +QWVPF E
Sbjct:  248 VFDGEEFNRAARFWTYGYDIYTPNRVYVLHDYQRSQHNPVTASWHRN-TDMVATAASHKRLKTMLDMPRGETDPAVADRLRRSKFGLGDRRNLEQLMEFSGVDLRNEKFPIDGKNRCGNLQWVPFAE 373          
BLAST of mRNA_P-wetherbeei_contig7490.1.1 vs. uniprot
Match: A0A7S2EFK9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EFK9_TRICV)

HSP 1 Score: 106 bits (264), Expect = 5.440e-24
Identity = 59/139 (42.45%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    4 VFDGEEFGVAARLWTRGYDMYTPDKSIVGHDYDKVEG-GPAPGSWNNNPIQHKQREQAYRRLKTMLHMKGGEDTPEAHAAIGKYGIGGRRTMEQYQRFVGVNLTTLEITGNR----CGAIQWVPFEEEWPPTENNLGGP 405
            +FD E+F   AR+WTRGYD+YTP ++IV HDY+  EG      +    P    QREQA  R+ T+L +KGG+ +  A A +G YG+G RRTMEQ   F+G++L      GN     CG + +VP + +  P EN    P
Sbjct:  296 LFDAEQFPRFARMWTRGYDVYTPTRNIVYHDYEDTEGVDKLDWAARGYPSPKVQREQALHRIWTLLQLKGGDRSTAAQANLGIYGLGKRRTMEQLDEFLGIDLKGK--VGNAKNLSCGTLAYVPPDPDTSPLENLFDNP 432          
BLAST of mRNA_P-wetherbeei_contig7490.1.1 vs. uniprot
Match: A0A7S4JW83_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JW83_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.430e-23
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 1
Query:    4 VFDGEEFGVAARLWTRGYDMYTPDKSIVGHDYDKVEGGPAPGSWNNN--PIQHKQREQAYRRLKTMLHMKGGEDTPEAHAAIGKYGIGGRRTMEQYQRFVGVNLTTLEITGN--RCGAIQWVPFEEEWPPTENNLGGP 405
            +FD E+F   AR WTRGYD YTP  +I  HD D    G  P +W +   P    QRE A +R+ T+L ++GGE   +A A +G YG+G RRT+EQ + FVG+++   +   +  RCG +Q+VP++    P  N    P
Sbjct:  270 LFDAEQFPRYARFWTRGYDAYTPAVNIAYHDADPNPDGIDPLNWASRGYPSPKVQREGALKRIHTLLGLEGGEKVQKARANLGLYGLGRRRTLEQLEEFVGIDMIGKKSNTDDKRCGTLQYVPYDPSISPYANMYDQP 407          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7490.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV9_9PHAE8.000e-6064.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZER6_9STRA4.920e-5661.59GlcNAc-domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S3UP91_HETAK4.160e-3448.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3YLX0_HETAK5.320e-2847.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UUL0_HETAK2.260e-2540.65Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
I2CPM0_NANGC3.500e-2543.65Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
F0Y7S9_AURAN8.300e-2542.19Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1Z148_TRICV2.440e-2446.46Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2EFK9_TRICV5.440e-2442.45Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4JW83_9STRA1.430e-2340.58Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7490contigP-wetherbeei_contig7490:1933..3071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G1A5
PFAMsGlcNAc
Model size426
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.88e-60
EggNOG OGs2CXJN@1|root,2RY14@2759|Eukaryota
Ec32 ortholog descriptionGlycosyltransferase, GlcNAc
Ec32 orthologEc-12_005220.1
DescriptionGlycosyltransferase (GlcNAc)
Cds size426
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186984.3900194-CDS-P-wetherbeei_contig7490:1932..20371683186984.3900194-CDS-P-wetherbeei_contig7490:1932..2037Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7490 1933..2037 -
1683186984.403952-CDS-P-wetherbeei_contig7490:2360..25501683186984.403952-CDS-P-wetherbeei_contig7490:2360..2550Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7490 2361..2550 -
1683186984.414109-CDS-P-wetherbeei_contig7490:2940..30711683186984.414109-CDS-P-wetherbeei_contig7490:2940..3071Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7490 2941..3071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7490.1.1prot_P-wetherbeei_contig7490.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7490 1933..3071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7490.1.1

>prot_P-wetherbeei_contig7490.1.1 ID=prot_P-wetherbeei_contig7490.1.1|Name=mRNA_P-wetherbeei_contig7490.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MVFDGEEFGVAARLWTRGYDMYTPDKSIVGHDYDKVEGGPAPGSWNNNPI
QHKQREQAYRRLKTMLHMKGGEDTPEAHAAIGKYGIGGRRTMEQYQRFVG
VNLTTLEITGNRCGAIQWVPFEEEWPPTENNLGGPYWERRLA
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mRNA from alignment at P-wetherbeei_contig7490:1933..3071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7490.1.1 ID=mRNA_P-wetherbeei_contig7490.1.1|Name=mRNA_P-wetherbeei_contig7490.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1139bp|location=Sequence derived from alignment at P-wetherbeei_contig7490:1933..3071- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTTCGATGGGGAGGAGTTCGGCGTGGCAGCGCGGTTGTGGACGCG TGGCTACGACATGTACACGCCAGACAAGAGCATCGTGGGGCACGACTACG ACAAGGTCGAGGGCGGGCCCGCGCCCGGCAGGTGAGAAAGACAAAAAGTA ATAAAGTCGGGAGTCGGGAGCCAGAAGAAGAGTTGTCTCTGTCTGCTTTC CCGGTTATCTTTGAATGGAAAAGGGTGTTGCGTGTGGTGTTTACCGCCGC TGCAGCTGTCGCTGTTTTTGGTCCGGCTGCTGCTGCGTCTTCTGGCAATC CGTGCCGCCGCCGGTGCCGCTGGCGGCACTGATACCGCGCCGCCCTGGTT GCGGCTATCATTATAGCTGCTTTCGCCGATGGTGCGCCTATTGCCGCGGC CCTACCAATGATATTGACATCCACATTTCTCTTGTCACCGAGTCTCCTCA TCCCTCCCGCCGACCGGATGTTCCTCGCATCCTTTCGTATCCCCTTGTCG TCCTGGCTTACCGGCTACCAGCTGGAACAACAACCCGATCCAGCACAAGC AGCGCGAGCAGGCATACCGGCGGCTCAAGACCATGCTGCACATGAAGGGC GGGGAGGACACGCCCGAGGCGCACGCCGCCATCGGCAAGTACGGCATCGG CGGACGGCGAACGATGGAGCAGTACCAGCGCTTCGTCGGAGTCAATCTCA CCACCCTCGAGGTGAGGACGAAGAGTCGAGAGAGAAGCGTCAGGAGTGGA GAGTGAGACGGGATTTGGGGGCGATTTCGGAACGGGACGATACTCTATAA GGTTGGGGAACGGTGAGAGTACGGGTCTTTGACGACAGCTGGCGGCGCTG CCTCTATATCGAAACGGGCCCGTCGTGTCCCGGCTTGCGGCACGTCAGAG AAGATGATCCTAGAAGATTATTATCCTGCACTCCTGCAGGAGGCATAGCA CCGCTTTACGTTCCAACTGACAAGCCAAACTGCATGCCCATTTTCTTCCA CCTATTTCCGTTCCTTCTTTGTATCTCCATCCAGATCACGGGGAACCGCT GCGGAGCCATCCAGTGGGTGCCCTTCGAGGAGGAGTGGCCGCCGACGGAA AACAACCTCGGCGGGCCCTACTGGGAGCGCCGCCTGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7490:1933..3071-

>mRNA_P-wetherbeei_contig7490.1.1 ID=mRNA_P-wetherbeei_contig7490.1.1|Name=mRNA_P-wetherbeei_contig7490.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig7490:1933..3071- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTTCGATGGGGAGGAGTTCGGCGTGGCAGCGCGGTTGTGGACGCG
TGGCTACGACATGTACACGCCAGACAAGAGCATCGTGGGGCACGACTACG
ACAAGGTCGAGGGCGGGCCCGCGCCCGGCAGCTGGAACAACAACCCGATC
CAGCACAAGCAGCGCGAGCAGGCATACCGGCGGCTCAAGACCATGCTGCA
CATGAAGGGCGGGGAGGACACGCCCGAGGCGCACGCCGCCATCGGCAAGT
ACGGCATCGGCGGACGGCGAACGATGGAGCAGTACCAGCGCTTCGTCGGA
GTCAATCTCACCACCCTCGAGATCACGGGGAACCGCTGCGGAGCCATCCA
GTGGGTGCCCTTCGAGGAGGAGTGGCCGCCGACGGAAAACAACCTCGGCG
GGCCCTACTGGGAGCGCCGCCTGGCG
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