mRNA_P-wetherbeei_contig7485.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7485.1.1
Unique NamemRNA_P-wetherbeei_contig7485.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7485.1.1 vs. uniprot
Match: D8LL02_ECTSI (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL02_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 1.620e-76
Identity = 144/250 (57.60%), Postives = 169/250 (67.60%), Query Frame = 1 
Query:  337 LPQTVDRYIGARARLERRLSASGPLADGPDAGRLAPAAAAAALADAGSVTGMIRSLWAGNGAGTVVARGLASAAQRTEQPLPFTEALFKAGVSETAHSTKQGILLEGYLTKFSPGGLKGVRWHRRYFVLYAGGGIGSGANTGGGAEKAELRYYKSSAAAAWGVIPLGERGAVPLRLVTRIEQPSHAKWKGCRFDLVVRYRGEGRYPGCHIRPGKEHEVRTTKTFKLCAEDAQQRLLWVTVIESLMKRHGW 1086
            LP  V  YIGAR ++E  +SASGP+       R+   AA      A    G +R      G    + +  +S  QRTEQ  PFTEA+FKAGVSET HSTKQGILLEG L KFSP  ++GVRWH+RYFVLYA                 ELRYY++ A AAWG IPLGERG++PLRLV +IEQPS  K++GCRFDLVV ++GE R+PG HIRPG+E  VRTTKTFK  A DAQQRLLWVTVIE+LMKRHGW
Sbjct:  594 LPDAVYSYIGAREKMEHEMSASGPVF----LPRVDNLAAKTVAEGAVPAWGKLR------GGSLDITKQASSTTQRTEQHQPFTEAMFKAGVSETRHSTKQGILLEGDLQKFSPESMRGVRWHKRYFVLYA--------------CACELRYYRTHAEAAWGRIPLGERGSIPLRLVVKIEQPSDKKYRGCRFDLVVLHKGESRHPGLHIRPGQESRVRTTKTFKFNAADAQQRLLWVTVIEALMKRHGW 819
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BLAST of mRNA_P-wetherbeei_contig7485.1.1 vs. uniprot
Match: A0A835ZLL0_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLL0_9STRA)

HSP 1 Score: 243 bits (619), Expect = 7.670e-69
Identity = 141/279 (50.54%), Postives = 165/279 (59.14%), Query Frame = 1 
Query:  334 TLPQTVDRYIGARARLERRLSASGPLADGPDAGRLAPAAAAAALADAGSVTGMIRSLWAGNGAGTV-VARGLASAAQRTEQPLPFTEALFKAGVSETAHSTKQGILLEGYLTKFSPGGLKGVRWHRRYFVLYAGGGIGSGANTGGGAEKAELRYYKSSAA---------------------------AAWGVIPLGERGAVPLRLVTRIEQPSHAKWKGCRFDLVVRYRGEGRYPGCHIRPGKEHEVRTTKTFKLCAEDAQQRLLWVTVIESLMKRHGW 1086
            +LP+ VD YI  R  +ERR+SA+GP        RL    A A+ AD             G   GT+  ++ L S AQ   + +PFTEALFKAGVSET HSTKQGILLEG+L K+SP  + G +WH RY VLYAG                ELRYY++  A                           A+WG IP+GERG+ PLRL+ RIEQPS AKWKGCRFDLV R+RG GRYPG  IRPG E  V +TKT K CAE  QQRLLWVTVIESLMK+HGW
Sbjct:  607 SLPRAVDDYIDVRVDMERRMSATGPR-------RLPQPHAFASFAD-------------GRRHGTLSYSKELVSGAQTAAESMPFTEALFKAGVSETPHSTKQGILLEGWLQKYSPNSVAGRKWHARYCVLYAG--------------SCELRYYRACQASGWRWFSWCVSVERQGVASETGHHDKDASWGRIPIGERGSTPLRLLVRIEQPSKAKWKGCRFDLVARHRGSGRYPGIQIRPGTERTVLSTKTLKFCAETPQQRLLWVTVIESLMKQHGW 851
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BLAST of mRNA_P-wetherbeei_contig7485.1.1 vs. uniprot
Match: A0A7S3UTN7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTN7_HETAK)

HSP 1 Score: 116 bits (291), Expect = 2.280e-26
Identity = 77/169 (45.56%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:  634 KQGILLEGYLTKFSPGG-LKGVRWHRRYFVLYAGGGIGSGANTGGGAEKAELRYYKSSAAAAWGVIPLGERGAVPLRLVTRIEQPSHAKWKGCRFDLVVRYRGEGRY----------PGCHIRPGKE-----------HEVRTTKTFKLCAEDAQQRLLWVTVIESLMK 1074
            KQG LLEG L K++ GG L+   WH RYFVL A                 ELRYY     +AWG IPL E+ AVPLR V RIE P+ AKW G RFDLV    G G+Y          PG   R G+E              R  KTFKL A DA  RLLWVTV++ LM+
Sbjct:  145 KQGALLEGALLKWASGGALRRGGWHERYFVLLA--------------RSRELRYYADFTDSAWGSIPLEEKCAVPLRTVERIEVPTDAKWAGRRFDLVCVDWGGGKYAADEDPQPGAPGGGEREGEEGTPXXXXXXXXXXXRAGKTFKLVAPDAATRLLWVTVLQDLMR 299
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BLAST of mRNA_P-wetherbeei_contig7485.1.1 vs. uniprot
Match: A0A662WME3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WME3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.890e-16
Identity = 60/179 (33.52%), Postives = 82/179 (45.81%), Query Frame = 1 
Query:  640 GILLEGYLTKFSPGGLKGVR-WHRRYFVLYAGGGIGSGANTGGGAEKAELRYYKSSAAAAWGVIPLGERGAVPLRLVTRIEQPSHAKWKGCRFDLVVRYRGEGRYPGCH-------------IRPGKEHEVRTTKT-------------------FKLCAEDAQQRLLWVTVIESLMKR 1077
            G+LLEG+L +    G+KG++ W+ RYFVLYA                 E+RYY     +AWG IPLGE GA+ LRL+ RI + SH K+KGCRFD+  R      Y   +             I P    E  T  T                   + L A+  Q  + WV +++SL+ R
Sbjct:  441 GVLLEGWLRQKQRRGVKGLKKWNARYFVLYA--------------RWNEVRYYADVVQSAWGPIPLGEIGAISLRLIQRIGKRSHPKYKGCRFDITCRNSWGTHYADDYVSSDEENGNXXXXINPSTNEEAATANTGAAAKPQQEKSGTPQSSRIYSLIADSPQVTVAWVNMLDSLLVR 605
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BLAST of mRNA_P-wetherbeei_contig7485.1.1 vs. uniprot
Match: A0A662X1D5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X1D5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.890e-16
Identity = 56/179 (31.28%), Postives = 85/179 (47.49%), Query Frame = 1 
Query:  640 GILLEGYLTKFSPGGLKGVR-WHRRYFVLYAGGGIGSGANTGGGAEKAELRYYKSSAAAAWGVIPLGERGAVPLRLVTRIEQPSHAKWKGCRFDLVVRYRGEGRYPGCHIRPGKEHEV--------------------------------RTTKTFKLCAEDAQQRLLWVTVIESLMKR 1077
            G+LLEG+L +    G+KG++ W+ RYFVLYA               + E+RYY     +AWG IPLGE GA+ LRL+ RI + SH K+KGCRFD+  R      Y   ++   +E                                   ++++ + L A+  Q  + WV +++SL+ R
Sbjct:  440 GVLLEGWLRQKQRRGVKGLKKWNARYFVLYA--------------RRNEVRYYADVVQSAWGPIPLGEIGAISLRLIQRIGKRSHPKYKGCRFDITCRNSWGTHYADDYVSSDEEXXXXXXXXXXXXXXXXXXXXXXXXXKPQQEKSGTPQSSRVYSLIADSPQVTVAWVNMLDSLLVR 604
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BLAST of mRNA_P-wetherbeei_contig7485.1.1 vs. uniprot
Match: A0A3F2RW15_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RW15_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.360e-16
Identity = 59/179 (32.96%), Postives = 84/179 (46.93%), Query Frame = 1 
Query:  640 GILLEGYLTKFSPGGLKGVR-WHRRYFVLYAGGGIGSGANTGGGAEKAELRYYKSSAAAAWGVIPLGERGAVPLRLVTRIEQPSHAKWKGCRFDLVVRYRGEGRY---------------------------PGCHIRPGKE-HEV----RTTKTFKLCAEDAQQRLLWVTVIESLMKR 1077
            G+LLEG+L +    G+KG++ W+ RYFVLYA                 E+RYY     +AWG IPLGE GA+ LRL+ R  + SH K+KGCRFD+  R      Y                           P     P K+ HE     R+++ + L A+  Q    W+ +++SL+ R
Sbjct:  373 GVLLEGWLRQKQRRGIKGLKKWNSRYFVLYA--------------RSNEIRYYADVVQSAWGPIPLGEIGAISLRLIQRTGKRSHPKYKGCRFDITCRNSWGTHYADDYVSSDEENGSSNTXXXXXXXXXXXPAKAATPAKQPHEKSGTPRSSRVYSLIADSPQVTAAWLNMLDSLLVR 537
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7485.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LL02_ECTSI1.620e-7657.60PH domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835ZLL0_9STRA7.670e-6950.54PH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S3UTN7_HETAK2.280e-2645.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A662WME3_9STRA1.890e-1633.52Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662X1D5_9STRA1.890e-1631.28Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3F2RW15_9STRA4.360e-1632.96Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7485contigP-wetherbeei_contig7485:1446..3075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LL02
PFAMsPH
Model size1087
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.65e-77
EggNOG OGs2CZ8I@1|root,2S929@2759|Eukaryota
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-11_006220.1
Cds size1086
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186984.0563886-CDS-P-wetherbeei_contig7485:1445..20841683186984.0563886-CDS-P-wetherbeei_contig7485:1445..2084Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7485 1446..2084 +
1683186984.0851052-CDS-P-wetherbeei_contig7485:2307..26461683186984.0851052-CDS-P-wetherbeei_contig7485:2307..2646Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7485 2308..2646 +
1683186984.1074107-CDS-P-wetherbeei_contig7485:2967..30751683186984.1074107-CDS-P-wetherbeei_contig7485:2967..3075Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7485 2968..3075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7485.1.1prot_P-wetherbeei_contig7485.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7485 1446..3075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7485.1.1

>prot_P-wetherbeei_contig7485.1.1 ID=prot_P-wetherbeei_contig7485.1.1|Name=mRNA_P-wetherbeei_contig7485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=362bp
SRHGGPAGAAAAATGRAALPSPARGTSAHRGGNGNNGQAGSGGDDDDDGE
ESWVGFEGEQGSKFDGGSTSEFEGLENASYEEYDNFFDALGPRSPPGGNG
GGNGNGNGHSSTLPQTVDRYIGARARLERRLSASGPLADGPDAGRLAPAA
AAAALADAGSVTGMIRSLWAGNGAGTVVARGLASAAQRTEQPLPFTEALF
KAGVSETAHSTKQGILLEGYLTKFSPGGLKGVRWHRRYFVLYAGGGIGSG
ANTGGGAEKAELRYYKSSAAAAWGVIPLGERGAVPLRLVTRIEQPSHAKW
KGCRFDLVVRYRGEGRYPGCHIRPGKEHEVRTTKTFKLCAEDAQQRLLWV
TVIESLMKRHGW
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mRNA from alignment at P-wetherbeei_contig7485:1446..3075+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7485.1.1 ID=mRNA_P-wetherbeei_contig7485.1.1|Name=mRNA_P-wetherbeei_contig7485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1630bp|location=Sequence derived from alignment at P-wetherbeei_contig7485:1446..3075+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCGTCACGGCGGCCCTGCAGGCGCAGCAGCGGCAGCGACGGGGCGGGC
GGCGCTGCCGTCGCCGGCTCGCGGGACCTCCGCGCACCGCGGCGGCAACG
GCAATAATGGCCAAGCAGGCAGCGGCGGCGACGACGACGATGATGGGGAG
GAGTCGTGGGTTGGCTTCGAGGGCGAACAGGGCTCCAAGTTTGACGGCGG
CAGCACCTCGGAGTTTGAGGGGCTCGAAAATGCCTCCTACGAGGAATACG
ATAACTTTTTCGACGCTCTGGGCCCGCGCTCGCCGCCTGGCGGTAATGGT
GGTGGAAATGGAAACGGAAACGGTCACTCGTCCACGCTACCTCAAACCGT
TGACCGTTACATCGGCGCACGTGCGCGGCTGGAGCGGCGGCTGAGCGCGT
CGGGGCCGCTGGCTGACGGGCCAGACGCGGGCCGGCTGGCGCCGGCGGCG
GCGGCGGCGGCGCTGGCTGATGCCGGGTCCGTGACCGGCATGATTCGGAG
CCTGTGGGCAGGAAACGGCGCCGGAACGGTCGTCGCGCGCGGCCTGGCTT
CGGCGGCACAGCGGACGGAGCAACCGCTGCCGTTCACGGAGGCGCTCTTC
AAGGCTGGCGTCTCCGAGACGGCTCACTCCACCAAACAGGTGACGATACA
GACTCTTCCAGGATTCTATCAGCCGTTTTGTGCTTAGTGTTGGAGGGTCC
AACTGCTTTCCCAACTGCTTCCCATTCCGTGAGCGTGTTTGAAATGTATA
TTTTGCTCGCCGAAAAGCACAAGCATCGTTGTGACGTGACGGTCTCACCA
ATTCTTCCCCCGGCATGTTACCCATTCGTTTATATTCAACCTTCTCGCTT
GCCCGTCCGTAGGGCATCCTTCTAGAGGGTTATCTGACCAAATTCAGCCC
CGGCGGCCTCAAGGGCGTCCGCTGGCACCGCCGCTACTTCGTGCTCTACG
CCGGCGGCGGCATCGGCAGCGGCGCCAATACCGGCGGCGGCGCCGAAAAG
GCGGAGTTACGCTATTACAAAAGCAGCGCCGCGGCGGCGTGGGGCGTCAT
CCCGCTCGGGGAGCGCGGCGCCGTGCCGCTGCGGCTGGTGACGCGCATCG
AGCAGCCAAGCCACGCCAAGTGGAAAGGCTGCCGGTTCGATTTGGTGGTA
CGATACCGTGGCGAGGGGCGTTATCCAGGCTGCCACATCCGGCCAGGCAA
GGTGAGAGAGTGTGAAAGAAGGAAGGGAAAGGAGCGAAAGGGATGACGGA
CCGTGCGGGTGCAGCGGCATTTGCGGCAGCGGCACTGGCGGCGTTGGTGG
CGGCAACGTCGGCGGCAGCTCAAAAAAGCACATCTAGTACATCTGGCAGC
AGGTGGAGCAATATTAAACCTTGTGGCACCACCCCGTTACCCTCGTTTCT
TATTATAATTATGCTGTTCTCGGAGATACAATTGAGAACCGAAGTGCGCC
AAAGCAGCCCTAAAGTCAACGAGCAAAGTGTTTGCAACCTGCCAAAACCG
CCACACCGCCGAAAACGCGCAGGAGCATGAGGTGCGCACCACCAAGACTT
TCAAACTCTGCGCCGAAGACGCCCAGCAGCGCCTCCTGTGGGTGACTGTC
ATCGAGTCGCTCATGAAGCGCCACGGCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7485:1446..3075+

>mRNA_P-wetherbeei_contig7485.1.1 ID=mRNA_P-wetherbeei_contig7485.1.1|Name=mRNA_P-wetherbeei_contig7485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1086bp|location=Sequence derived from alignment at P-wetherbeei_contig7485:1446..3075+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCGTCACGGCGGCCCTGCAGGCGCAGCAGCGGCAGCGACGGGGCGGGC
GGCGCTGCCGTCGCCGGCTCGCGGGACCTCCGCGCACCGCGGCGGCAACG
GCAATAATGGCCAAGCAGGCAGCGGCGGCGACGACGACGATGATGGGGAG
GAGTCGTGGGTTGGCTTCGAGGGCGAACAGGGCTCCAAGTTTGACGGCGG
CAGCACCTCGGAGTTTGAGGGGCTCGAAAATGCCTCCTACGAGGAATACG
ATAACTTTTTCGACGCTCTGGGCCCGCGCTCGCCGCCTGGCGGTAATGGT
GGTGGAAATGGAAACGGAAACGGTCACTCGTCCACGCTACCTCAAACCGT
TGACCGTTACATCGGCGCACGTGCGCGGCTGGAGCGGCGGCTGAGCGCGT
CGGGGCCGCTGGCTGACGGGCCAGACGCGGGCCGGCTGGCGCCGGCGGCG
GCGGCGGCGGCGCTGGCTGATGCCGGGTCCGTGACCGGCATGATTCGGAG
CCTGTGGGCAGGAAACGGCGCCGGAACGGTCGTCGCGCGCGGCCTGGCTT
CGGCGGCACAGCGGACGGAGCAACCGCTGCCGTTCACGGAGGCGCTCTTC
AAGGCTGGCGTCTCCGAGACGGCTCACTCCACCAAACAGGGCATCCTTCT
AGAGGGTTATCTGACCAAATTCAGCCCCGGCGGCCTCAAGGGCGTCCGCT
GGCACCGCCGCTACTTCGTGCTCTACGCCGGCGGCGGCATCGGCAGCGGC
GCCAATACCGGCGGCGGCGCCGAAAAGGCGGAGTTACGCTATTACAAAAG
CAGCGCCGCGGCGGCGTGGGGCGTCATCCCGCTCGGGGAGCGCGGCGCCG
TGCCGCTGCGGCTGGTGACGCGCATCGAGCAGCCAAGCCACGCCAAGTGG
AAAGGCTGCCGGTTCGATTTGGTGGTACGATACCGTGGCGAGGGGCGTTA
TCCAGGCTGCCACATCCGGCCAGGCAAGGAGCATGAGGTGCGCACCACCA
AGACTTTCAAACTCTGCGCCGAAGACGCCCAGCAGCGCCTCCTGTGGGTG
ACTGTCATCGAGTCGCTCATGAAGCGCCACGGCTGG
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