mRNA_P-wetherbeei_contig7452.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7452.1.1
Unique NamemRNA_P-wetherbeei_contig7452.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7452.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7452contigP-wetherbeei_contig7452:353..2786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size787
Hectar predicted targeting categoryother localisation
Exons7
Cds size783
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7452.1.1prot_P-wetherbeei_contig7452.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7452 353..2784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186982.5124319-CDS-P-wetherbeei_contig7452:352..3751683186982.5124319-CDS-P-wetherbeei_contig7452:352..375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7452 353..375 +
1683186982.5224056-CDS-P-wetherbeei_contig7452:611..7311683186982.5224056-CDS-P-wetherbeei_contig7452:611..731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7452 612..731 +
1683186982.5323045-CDS-P-wetherbeei_contig7452:1070..11901683186982.5323045-CDS-P-wetherbeei_contig7452:1070..1190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7452 1071..1190 +
1683186982.5421736-CDS-P-wetherbeei_contig7452:1448..15351683186982.5421736-CDS-P-wetherbeei_contig7452:1448..1535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7452 1449..1535 +
1683186982.552482-CDS-P-wetherbeei_contig7452:1915..20021683186982.552482-CDS-P-wetherbeei_contig7452:1915..2002Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7452 1916..2002 +
1683186982.5630054-CDS-P-wetherbeei_contig7452:2251..23411683186982.5630054-CDS-P-wetherbeei_contig7452:2251..2341Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7452 2252..2341 +
1683186982.5734804-CDS-P-wetherbeei_contig7452:2528..27841683186982.5734804-CDS-P-wetherbeei_contig7452:2528..2784Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7452 2529..2784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7452.1.1

>prot_P-wetherbeei_contig7452.1.1 ID=prot_P-wetherbeei_contig7452.1.1|Name=mRNA_P-wetherbeei_contig7452.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=261bp
EEGKEKGWSLFSHAKGKAEEAKEHVKGAADDATESTKQAAEDAKEKGWSL
FGVAKDKAEEMGERAKSTAEEGKESAKETAEDIEEKGWSLFGGAKEKADE
TAESAQQAAREGREKGWSLFGGAKEKADEAAESTQQMAEEGKEKGWSLFG
GAKDEVAEEARRRADEEATHAHEAGRSVLGTVKEKAGEVTEGIKSAFGAG
AHKAEDARDATAESAATIRDETAESVATARDMAATAASDAQRRAGETVQS
AKDAVSETAGT
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mRNA from alignment at P-wetherbeei_contig7452:353..2786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7452.1.1 ID=mRNA_P-wetherbeei_contig7452.1.1|Name=mRNA_P-wetherbeei_contig7452.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2434bp|location=Sequence derived from alignment at P-wetherbeei_contig7452:353..2786+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGGGCAAGGAGAAGGGCTGGTAAGTTCCCGCGGTCGGCAGGCGGTT
TTGAGGGGTCAAGGGTATTTTTGTGTTCTTATGACTGAAAACCAACTTAG
GCCTACCTCGTTTTTCGCCCCGCCGGGGGTATTGCGCTGCGCTGCCGCGT
CCGCCGCCGCGGCGTTACAGCTGCAAAGCGTGGCTCCTCCTGTCGAGCGC
TGACGCAACACCATCGCCGCCGCCGTTGCCGCCACCCATCCGCCCCATCT
TTCGCCCAGGTCGCTGTTCAGCCACGCCAAGGGCAAGGCGGAGGAGGCTA
AAGAGCACGTGAAAGGCGCCGCCGACGACGCGACGGAGTCGACCAAACAG
GCGGCCGAAGACGCCAAGGAGAAGGGCTGGTGCGTCCTGTGTTGCGTGTT
GATTGGCGAGCGGCTTTGAGAGCAGTGTACAGCAGCGTTGATGTTACTGG
AACGATGCCGGGCGCGGGGACTCTTGAAGCGCACTTTGCTCCTCGCGGCA
CCTTTTAGTCTTCTCTTGTTACATTTTATGAAGGGAACGGATCGAAGGCG
AAACGGGAAGCTTTGGCGGAAAAGAAATGCCACCGCCGTTTCTAACTGCC
AATCCTAACGACTTCGCCACTGCCGCCGTCACGGGTGCCGTCACGGGTGC
CGTCACCCTCGCCGTTTTCTCGGCCGCTGCTTGCTGCCCATGGCGGTAAC
CTCCCGTTACCCTTGCAGGTCGCTATTCGGCGTGGCCAAGGACAAGGCAG
AGGAGATGGGCGAGCGTGCCAAGTCGACCGCGGAGGAGGGCAAGGAATCA
GCGAAGGAGACGGCCGAGGACATCGAAGAGAAGGGTTGGTGCGTCTCGTT
TATTTTCCCGCACGCAGTGGCTGCCGTCAGGGTGCCGTGGTGCTTTCTCT
TTTGTCCTTTTCTGGTTTATCGTGTTTCCCTCTCGCCGACTTCGCTCGGC
TTTGGGTCACGTTCGTCGGTCTGGCGGCATGATGCCTTTGGCGACGTCAC
CGCAGCGCGCGCCAGTCGCCTGCTGTCACCACTTGCTGTCTTGGCACACA
TTGAAACTTGCATCACGCCCTTTGTTTCTGAAACCACTTCCGGTAGGTCG
CTGTTCGGCGGCGCCAAGGAGAAAGCCGACGAGACGGCGGAGAGCGCGCA
GCAGGCGGCAAGGGAGGGCAGGGAGAAGGGCTGGTAAGTCGCCCTGTCAG
ACTTCGGATTTTTACATAGAATGACTTGCCGGCTTTTCTCGATTTTCGTT
TGTTCAGTGCCGGAAGTCGGCGAGGCGTGGAAGAAGACCGTCTCTGAAGC
AGCGCGGGATGCTACGCCTACTGTCGTTGAATTTTATTACAAGGTTGGCT
TCCAACATGTCTGTCTGCACTGAGCAGCAGACCTACCTGCTGACCGGGCA
TTTTTGGCCCGCGAGATCATCGAAAGCGACAGCTGGCTCCTTCTCATCCT
GCCCTCACCGCTCACTTCTGCCGCCGTCTTTGTCGTCATTTTCTTTCTCC
CGCCCCTTTCTCGCCGGCCGTCGGACGTTACTACGCCCTGGCGCAACTCC
ACCTCAAAACCAGGTCGCTGTTCGGCGGCGCCAAAGAGAAGGCCGACGAG
GCGGCGGAGAGCACGCAGCAGATGGCCGAGGAGGGCAAGGAGAAGGGCTG
GTGCGTCACACCGTCACAAAATATGATATTTCCTGTTGCCGTTTCTGATA
CTTGCAGATCAGAGCCTTGTTTCAGTTTTCCAGCCGGTATTGCTCTGACG
CCTCTTGCAGGCGGTTTTCGCCGCCATTCTTGCAGCACGCAGGGAAACAC
GCCTCAAGCGTCTATTGTTTAATGTCTTCAGACTGCTCTTGTCTTGCCAT
GTCCTCCCTCTCAATCTGTCCCAACTTTTCCATCCTTTCCCCATTTCAGG
TCGCTGTTCGGCGGGGCCAAGGACGAGGTGGCGGAGGAGGCGCGGCGCCG
GGCCGACGAGGAGGCGACGCACGCCCACGAGGCCGGCCGGTGCGTTCCCC
TTTCCAAGCAATGTGGCCGTGCCGTGTATTTGGTGTCTGCTCGCTTTTCT
TTGCTTCTTTTTGCCCGCAATTTGAGGTTCTCTTTTGTTCGAGTCCAATT
TTGCCTGCGAAAGTCGCATACAAACACCAACACCGACTACAATCCTCTTG
TTCCCTCTCGCTTGTTCCCGCCGCAGGTCGGTGCTCGGGACCGTCAAGGA
GAAGGCCGGCGAGGTGACGGAGGGCATCAAGTCCGCGTTCGGCGCTGGTG
CGCACAAGGCCGAGGACGCCAGGGACGCGACCGCCGAGTCCGCCGCCACC
ATCCGGGACGAGACCGCCGAGTCGGTCGCCACTGCCCGTGACATGGCCGC
CACTGCCGCCTCCGACGCGCAGCGCCGGGCGGGGGAGACGGTGCAGTCGG
CTAAGGACGCAGTATCGGAGACTGCCGGGACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7452:353..2786+

>mRNA_P-wetherbeei_contig7452.1.1 ID=mRNA_P-wetherbeei_contig7452.1.1|Name=mRNA_P-wetherbeei_contig7452.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=783bp|location=Sequence derived from alignment at P-wetherbeei_contig7452:353..2786+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGGGCAAGGAGAAGGGCTGGTCGCTGTTCAGCCACGCCAAGGGCAA
GGCGGAGGAGGCTAAAGAGCACGTGAAAGGCGCCGCCGACGACGCGACGG
AGTCGACCAAACAGGCGGCCGAAGACGCCAAGGAGAAGGGCTGGTCGCTA
TTCGGCGTGGCCAAGGACAAGGCAGAGGAGATGGGCGAGCGTGCCAAGTC
GACCGCGGAGGAGGGCAAGGAATCAGCGAAGGAGACGGCCGAGGACATCG
AAGAGAAGGGTTGGTCGCTGTTCGGCGGCGCCAAGGAGAAAGCCGACGAG
ACGGCGGAGAGCGCGCAGCAGGCGGCAAGGGAGGGCAGGGAGAAGGGCTG
GTCGCTGTTCGGCGGCGCCAAAGAGAAGGCCGACGAGGCGGCGGAGAGCA
CGCAGCAGATGGCCGAGGAGGGCAAGGAGAAGGGCTGGTCGCTGTTCGGC
GGGGCCAAGGACGAGGTGGCGGAGGAGGCGCGGCGCCGGGCCGACGAGGA
GGCGACGCACGCCCACGAGGCCGGCCGGTCGGTGCTCGGGACCGTCAAGG
AGAAGGCCGGCGAGGTGACGGAGGGCATCAAGTCCGCGTTCGGCGCTGGT
GCGCACAAGGCCGAGGACGCCAGGGACGCGACCGCCGAGTCCGCCGCCAC
CATCCGGGACGAGACCGCCGAGTCGGTCGCCACTGCCCGTGACATGGCCG
CCACTGCCGCCTCCGACGCGCAGCGCCGGGCGGGGGAGACGGTGCAGTCG
GCTAAGGACGCAGTATCGGAGACTGCCGGGACG
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