mRNA_P-wetherbeei_contig7426.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7426.1.3
Unique NamemRNA_P-wetherbeei_contig7426.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7426.1.3 vs. uniprot
Match: A0A835Z4C8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C8_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.310e-45
Identity = 150/480 (31.25%), Postives = 213/480 (44.38%), Query Frame = 3
Query:  762 AASSQLDELLLWLQPCQAAERRRREVFERVRSVVLEGATGAEVFSCGSYPLKTYLPDGDIDMVVVFPGTSRRGPGSGGXXXXXXXXXXXXXXXXXEAVERGLSQVNTALCLAAMCLTPRTAPNTPEKGGYGVAAIAAGSPTAGSXXXXXXXXXXXXNVFSGXXXXXXXXXXXXXXXXXXXXXGNSTAFEIRNVSFVNARTRIITTVVQNVSVDLTANQLGSCAAVALLEAANRAVGRGHLLKRALIALKAWGAHESPQYVG--QPVLGGKSAGVTSYALAVMVLHVFHRHGGALCTVLDAVLAFFRTFAEFDWEHEALCWQGSIPLTRIVTPEGVTAGSGGNSKAAXXXXXXXXXXXXXXXKAHRNGAGEGSLGANXXXSEGENAGNAETASGXXXXXXXXXXXXXXXXDTAGGVPGLAATVRRLRGLLEEKEMMFPVRHINIQDPLILSNNLGFSVSRAGAAALATALRLGRDHLEALL 2195
            +   Q++ LL  LQPC+ A+RRR+ V ++V  +V     G ++F+CGS+PL+TYL DGD+D+ V+F G        G                     +  L +V++ALCL  +           +  G G +++                                                       RNV+FVNARTRI+T +V ++SVD+T NQ+GS AA  LLE A+R V R HL+KR+++ LKAWG HE+P+Y G  QPV G K+ G+TSYAL++MVL +F  +   L T  + +LAFFR +++FDW++  +   GS PL+           SGG+  A                ++    A EG++ A                                    A G P                   F  R  NIQDPL  +NNLG SVS     +L +AL  GR HLEALL
Sbjct:   54 SVDQQVEWLLSHLQPCETADRRRQAVMDQVSGIV-SSYLGRQLFACGSFPLRTYLADGDLDL-VLFCGPCPSSADHGHP-------------------DHELLKVSSALCLDVLR----------QNDGAGYSSV-------------------------------------------------------RNVNFVNARTRIVTCIVGSLSVDITVNQIGSLAAALLLEEADRRV-RDHLIKRSVLLLKAWGLHEAPRYAGITQPVFGAKATGLTSYALSIMVLRLFALNACELRTPTEVLLAFFREYSDFDWDNLCVTLSGSKPLSA----------SGGSGVAGGGSDQHKFAALVSHLRSKIAQAKEGAVAA------------------------------------AAGAP----------------PERFQHRFCNIQDPLNDTNNLGHSVSLPVLRSLISALAKGRQHLEALL 384          
BLAST of mRNA_P-wetherbeei_contig7426.1.3 vs. uniprot
Match: D7FVD7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVD7_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 7.070e-31
Identity = 141/448 (31.47%), Postives = 177/448 (39.51%), Query Frame = 3
Query:  888 VFSCGSYPLKTYLPDGDIDMVVVFP--GTSRRGPGSGGXXXXXXXXXXXXXXXXXEAVE--------RGLSQVNTALCLAAMCLTPRTAPNTPEKGGYGVAAIAAGSPTAGSXXXXXXXXXXXXNVFSGXXXXXXXXXXXXXXXXXXXXXGNSTAFEIRNVSFVNARTRIITTVVQNVSVDLTANQLGSCAAVALLEAANRAVGRGHLLKRALIALKAWGAHESPQYVGQPVLGGKSAGVTSYALAVMVLHVFHRHGGALCTV--LDAVLAFFRTFAEFDWEHEALCWQGSIPLTRI--VTPEGVTAGSGGNSKAAXXXXXXXXXXXXXXXKAHRNGAGEGSLGANXXXSEGENAGNAETASGXXXXXXXXXXXXXXXXDTAGGVPGLAATVRRLRGLLEEKEMMFPVRHINIQDPLILSNNLGFSVSRAGAAALATALRLGRDHLEA 2189
            V   GS+PLKTYLP  D+DMV+  P   TS  G   GG                 EA +        +G   ++T   +AA       A     K          GSP                                            +   EIRNVS +NART I+T VV NV VDLT NQ GS AA ALLE A+  + R HL KR+L+ LKAW   E+P+ VG  VLG +  G+TSY L+VMVLH+F     A   V  LD ++ FF  ++EFDW    L   G +PL  +    P     G+GG S                  +  R           XXX +    G   +  G                  AG +P                   FP R  NIQDPL   NNLG SV++    AL  AL+ G+  LEA
Sbjct:    2 VLPVGSFPLKTYLPYADVDMVMFLPPKATSTSGGPVGGVGAESSGKEGRKDHEREEATDAHSGGDDGKGTDAIHTPALIAATMALCNVAMQASSK---------RGSPGHSRSWPPLL---------------------------------ETAKPEIRNVSLINARTPIVTMVVGNVVVDLTENQGGSVAASALLEEADNLIQRNHLFKRSLLLLKAWAWCETPRLVGNRVLGARKGGLTSYGLSVMVLHLFAASASADALVHPLDVLIRFFEVYSEFDWARYCLTLDGPVPLESVRGSHPYEGWHGNGGTSSRFEPLVKKVLAELFRVPEKDREXXXXXXX--XXXXXKAGRRGRRASRVGRLSDRHAEDALPETPRFAAGAMPH------------------FPRRDCNIQDPLNALNNLGHSVTKNNLKALKRALQQGQKKLEA 387          
BLAST of mRNA_P-wetherbeei_contig7426.1.3 vs. uniprot
Match: A0A7S3M722_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M722_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.030e-24
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 3
Query: 1308 GNSTAFE--IRNVSFVNARTRIITTVVQNVSVDLTANQLGSCAAVALLEAANRAVGRGHLLKRALIALKAWGAHESPQYVGQPVLGGKSAGVTSYALAVMVLHVFHRHGGALCTVLDAVLAFFRTFAEFDWEHEALCWQGSIPLTRI 1742
            G ST ++  IRNV FVNART++   +V N+SVD+T NQ+GS   +  LE A+R VG  HL K +L+ +K W  HES  Y G  ++G K+  ++SYA++VMVLH+F+++   L      + +F  T+  F W+   L   G+ PL+ +
Sbjct:  104 GKSTHYDMTIRNVEFVNARTKLAHCLVNNISVDITVNQIGSLITLTFLEEADRLVGMDHLFKNSLLLIKNWCYHESSYYCGMSIIGAKNGMLSSYAISVMVLHIFNKYTN-LTHPFSVLRSFLYTYTSFPWDTHVLTIDGAHPLSSV 249          
BLAST of mRNA_P-wetherbeei_contig7426.1.3 vs. uniprot
Match: A0A2P6VGQ5_9CHLO (Uncharacterized protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VGQ5_9CHLO)

HSP 1 Score: 111 bits (277), Expect = 3.350e-21
Identity = 98/302 (32.45%), Postives = 136/302 (45.03%), Query Frame = 3
Query: 1323 FEIRNVSFVNARTRIITTVVQNVSVDLTANQLGSCAAVALLEAANRAVGRGHLLKRALIALKAWGAHESPQYVGQPVLGGKSAGVTSYALAVMVLHVFHRHGGALCTVLDAVLAFFRTFAEFDWEHEALCWQGSIPLTRIVTPE--------GVTAGSGGNSKAAXXXXXXXXXXXXXXXKAHRNGAGEGSLGANXXXSEGENAGNAETASGXXXXXXXXXXXXXXXXDTAGGVPGLAATVRRLRGLLEEKEMM---FPVRHINIQDPLILSNNLGFSVSRAGAAALATALRLGRDHLEALL 2195
            F+IR+V  + A  +++  V  +V VD++ + +G    VA LEAA+R +GR HL KR+++ LKAW  +ES       +LG     ++SYAL V+VL++F+ H   L T LD +  F      FDWE   L  QG +PL  +  P         GVT                            +  A  G+    XXX        A  A G                 +A G P  A       G      ++   FP++H+NI DPL+LSNNLG SVS+A  A +  AL LG   LEA L
Sbjct:  129 FKIRDVQIIQAEVKLVKCVASDVVVDVSFDTVGGLCTVAFLEAADRRIGRQHLFKRSILLLKAWCYYESR------LLGAHHGLISSYALEVLVLYIFNLHHADLHTPLDVLRRFLAVLGSFDWERYCLALQGPLPLAELHDPHVHISQMPPGVTP----------LLDDEFMQHVLQQYSVQQYLAPHGAXXXXXXXXXXXXXXXAGPAPGCAL-------------SSAFGSPPTAPAAADSDGGGAAMPLVAPHFPLKHLNIVDPLLLSNNLGRSVSKASFARVRKALALGSRTLEAAL 401          
BLAST of mRNA_P-wetherbeei_contig7426.1.3 vs. uniprot
Match: A0A2P6U4G4_CHLSO (Poly(A) RNA polymerase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U4G4_CHLSO)

HSP 1 Score: 109 bits (272), Expect = 5.430e-21
Identity = 102/292 (34.93%), Postives = 143/292 (48.97%), Query Frame = 3
Query: 1320 AFEIRNVSFVNARTRIITTVVQNVSVDLTANQLGSCAAVALLEAANRAVGRGHLLKRALIALKAWGAHESPQYVGQPVLGGKSAGVTSYALAVMVLHVFHRHGGALCTVLDAVLAFFRTFAEFDWEHEALCWQGSIPLTRIVTPEGVTAGSGGNSKAAXXXXXXXXXXXXXXXKAHRNGAGEGSLGANXXXSEGENAGNAETASGXXXXXXXXXXXXXXXXDTAGGVPGLAATVRRLRGLLEEKEMMFPVRHINIQDPLILSNNLGFSVSRAGAAALATALRLGRDHLEALL 2195
            AF+IR+V  + A  +++  VV +V VD++ + +G    VA LEAA+R +GR HL KR+++ LKAW  +ES       +LG     ++SYAL V+VL++F+++   L T LD +  F      FDWE  AL  QG +PL  +  P+   +   G +                    +                        + A  XXXXXXXXXXXXXXXX           T R L          FP++H+NI DPL+ SNNLG SVS+A  + +  AL LG   LE  L
Sbjct:  140 AFKIRDVQIIQAEVKLVKCVVADVVVDVSFDTVGGLCTVAFLEAADRRIGRQHLFKRSILLLKAWCYYESR------LLGAHHGLISSYALEVLVLYIFNQYHAELHTPLDVLRRFLSVLGSFDWERYALALQGPLPLAELHNPQVDLSAMPGGATPLLDDAFMQEVLERYSVAQYL----------------------PQHAXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTARPLVA------PHFPLKHLNIVDPLLPSNNLGRSVSKASYSRVKKALALGSRTLEEAL 397          
BLAST of mRNA_P-wetherbeei_contig7426.1.3 vs. uniprot
Match: E1ZPC3_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZPC3_CHLVA)

HSP 1 Score: 108 bits (270), Expect = 1.430e-20
Identity = 87/291 (29.90%), Postives = 127/291 (43.64%), Query Frame = 3
Query: 1323 FEIRNVSFVNARTRIITTVVQNVSVDLTANQLGSCAAVALLEAANRAVGRGHLLKRALIALKAWGAHESPQYVGQPVLGGKSAGVTSYALAVMVLHVFHRHGGALCTVLDAVLAFFRTFAEFDWEHEALCWQGSIPLTRIVTPEGVTAGSGGNSKAAXXXXXXXXXXXXXXXKAHRNGAGEGSLGANXXXSEGENAGNAETASGXXXXXXXXXXXXXXXXDTAGGVPGLAATVRRLRGLLEEKEMMFPVRHINIQDPLILSNNLGFSVSRAGAAALATALRLGRDHLEALL 2195
            F+IR+V  + A  +++  VV +V VD++ + +G    VA LEAA+R +GR HL KR+++ LKAW  +ES       +LG     ++SYAL V+VL++F+ H   L T LD +  F      FDWE   L  QG +P+  +                                K H +     S G            +A+   G                + AG               ++     FP++H+NI DPL+ SNNLG SVS+A  A +  AL LG   LE  L
Sbjct:  468 FKIRDVQIIQAEVKLVKCVVHDVVVDVSFDTVGGLCTVAFLEAADRRIGRQHLFKRSILLLKAWCYYESR------LLGAHHGLISSYALEVLVLYIFNLHHAELHTPLDVLRRFLAVLGSFDWERYCLALQGPLPIADL-------------------------------HKLHVDRTALVSSGTEPLL-------DADFMRGVLQHYSVQHLSQQQQQEAAG---------------MQLVAPRFPLKHLNIVDPLLPSNNLGRSVSKASYARVKKALALGNRMLEEAL 699          
BLAST of mRNA_P-wetherbeei_contig7426.1.3 vs. uniprot
Match: UPI000BBE88DA (poly(A) polymerase pla1-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE88DA)

HSP 1 Score: 99.4 bits (246), Expect = 2.860e-19
Identity = 83/326 (25.46%), Postives = 133/326 (40.80%), Query Frame = 3
Query:  765 ASSQLDELLLWLQPCQAAERRRREVFERVRSVVLEGATGAEVFSCGSYPLKTYLPDGDIDMVVVFPGTSRRGPGSGGXXXXXXXXXXXXXXXXXEAVERGLSQVNTALCLAAMCLTPRTAPNTPEKGGYGVAAIAAGSPTAGSXXXXXXXXXXXXNVFSGXXXXXXXXXXXXXXXXXXXXXGNSTAFEIRNVSFVNARTRIITTVVQNVSVDLTANQLGSCAAVALLEAANRAVGRGHLLKRALIALKAWGAHESPQYVGQPVLGGKSAGVTSYALAVMVLHVFHRHGGALCTVLDAVLAFFRTFAEFDWEHEALCWQGSIPLTRI 1742
            A  +  E+L  +QP   A+R R E+F  V+++V     G EVF+ GS PLKTYLPDGDID+ V+ P                            E   + L  +  A                 E G                                                         + F + +V +V A+ ++I   ++N++VD++ NQ+G  +A+  LE A++  GR HL KR++I +KAW  +ES       +LG  +  +++YALAV+VLH+ +    +L   L  +  F   +A FDW    +   G I ++ +
Sbjct:   36 AEERAQEILNTIQPICVADRSRNEIFAYVQTLV-RNRLGTEVFNFGSVPLKTYLPDGDIDLTVLTPQDKE------------------------EDFAKALLSILEA-----------------ESG--------------------------------------------------------ESNFHVTDVQYVPAQVKVIKCKIKNIAVDISFNQMGGLSALCFLEQADQIFGRDHLFKRSIILIKAWCYYESR------ILGANTGLISTYALAVLVLHIINIGYPSLSGPLAVLFKFLDYYASFDWGKNCVTVHGPILISAL 257          
BLAST of mRNA_P-wetherbeei_contig7426.1.3 vs. uniprot
Match: A0A5D6XQY8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQY8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.800e-18
Identity = 56/155 (36.13%), Postives = 85/155 (54.84%), Query Frame = 3
Query: 1329 IRNVSFVNARTRIITTVVQNVSVDLTANQLGSCAAVALLEAANRAVGRGHLLKRALIALKAWGAHESPQYV---------------GQPVLGGKSAGVTSYALAVMVLHVFHRHGGALCTVLDAVLAFFRTFAEFDWEHEALCWQGSIPLTRIVT 1748
            +RNV+F+NA  R+I   V N+SVD TAN+ G+  A+ LL+A +  VG+GHLLK++LI +KAW  HES  Y+               G  V+G      ++YA+   V+ +F++ G  L   L A+  F    AEF W   A+   G + L+ + +
Sbjct: 1193 VRNVNFINADVRVIKCTVDNISVDFTANRTGALGALLLLDAMDARVGKGHLLKKSLILIKAWCIHESSAYLATAAAAPGPTPPPAGGHSVMGSSYGAFSTYAVNTAVMGLFNQFGARLTHPLQALFLFLDRMAEFPWHDAAMTLHGPVALSALAS 1347          
BLAST of mRNA_P-wetherbeei_contig7426.1.3 vs. uniprot
Match: D7FN92_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN92_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.410e-18
Identity = 95/331 (28.70%), Postives = 134/331 (40.48%), Query Frame = 3
Query:  762 AASSQLDELLLWLQPCQAAERRRREVFERVRSVVLEGATGAEVFSCGSYPLKTYLPDGDIDMVVVFPGTSRRGPGSGGXXXXXXXXXXXXXXXXXEAVERGLSQVNTALCLAAMCLTPRTAPNTPEKGGYGVAAIAAGSPTAGSXXXXXXXXXXXXNVFSGXXXXXXXXXXXXXXXXXXXXXGNSTAFEIRNVSFVN-ARTRIITTVVQN-VSVDLTANQLGSCAAVALLEAANRAVGRGHLLKRALIALKAWGAHESPQYVGQPVLGGKSAGVTSYALAVMVLHVFHRHGGALCTVLDAVLAFFRTFAEFDWEHEALCWQGSIPLTRIVT 1748
            A   ++D+LL  L+P   AE  RR VF  V   V + A GA+ F  G Y ++ YLPD ++ +          G                      EA E   S  +   C   +      A    E G  G AAI                                               G+S    + NV+F+N  R + I  VV N V+VD+ ANQ+G  A VALLE  ++ +G+ HL KR+L+ +K+W  +ES  Y G  +L      +T  ALA MVL V ++H   L T L  +  FF+  + FDW     C +G   L  + T
Sbjct:  614 AIDRRVDDLLRLLRPAPRAEGYRRSVFRFVTRQV-KRALGAQCFPVGGYAIQAYLPDEEVGISAFL----CHGQEKSWFVRVNETLCKVSSEASEEAAEEEGSGTSVGGCPEKITAVGEGATPKQEGGDGGGAAIRK-------------------------------------------EEGSSYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIKSWWVYESRAYTGSNMLSR----ITESALATMVLAVVNQHHARLHTPLQVMALFFQMHSHFDWSRYCWCIEGPRRLDTLHT 892          
BLAST of mRNA_P-wetherbeei_contig7426.1.3 vs. uniprot
Match: A0A835Q9U4_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q9U4_VANPL)

HSP 1 Score: 100 bits (249), Expect = 5.900e-18
Identity = 81/336 (24.11%), Postives = 136/336 (40.48%), Query Frame = 3
Query:  765 ASSQLDELLLWLQPCQAAERRRREVFERVRSVVLEGATGAEVFSCGSYPLKTYLPDGDIDMVVVFPGTSRRGPGSGGXXXXXXXXXXXXXXXXXEAVERGLSQVNTALCLAAMCLTPRTAPNTPEKGGYGVAAIAAGSPTAGSXXXXXXXXXXXXNVFSGXXXXXXXXXXXXXXXXXXXXXGNSTAFEIRNVSFVNARTRIITTVVQNVSVDLTANQLGSCAAVALLEAANRAVGRGHLLKRALIALKAWGAHESPQYVGQPVLGGKSAGVTSYALAVMVLHVFHRHGGALCTVLDAVLAFFRTFAEFDWEHEALCWQGSIPLTRIVTPEGVTAGS 1772
            A     E++  +QP  A+E+RR+ + E V+++ + G    EVF  GS PLKTYLPDGDID+ V+                                       + T LC               E  G+                                                         FE+++V +++A  +++  +VQNV VD++ NQ G  + +  LE  +R +G+ HL KR++I +KAW  +ES       +LG     +++YAL ++VL++FH     L      +  F   +++FDW++  +   G IP++ +      TAG+
Sbjct:   45 ADQATQEIIQLIQPTLASEQRRKAIVEYVQNL-MRGFFSTEVFPFGSVPLKTYLPDGDIDLTVI-------------------------------TFLNSEDTLVTELCSVL------------ELEGH----------------------------------------------------NKDARFEVKDVQYIHAEVKVVKCLVQNVVVDISFNQSGGLSTLCFLEQVDRFIGKHHLFKRSIILIKAWCYYESR------ILGAHHGLLSTYALEMLVLYIFHHFHSFLDGPFAVLFWFLDYYSKFDWDNYCISLSGPIPVSSLPELSPETAGN 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7426.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4C8_9STRA2.310e-4531.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FVD7_ECTSI7.070e-3131.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3M722_9STRA2.030e-2440.82Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2P6VGQ5_9CHLO3.350e-2132.45Uncharacterized protein n=1 Tax=Micractinium condu... [more]
A0A2P6U4G4_CHLSO5.430e-2134.93Poly(A) RNA polymerase n=1 Tax=Chlorella sorokinia... [more]
E1ZPC3_CHLVA1.430e-2029.90Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
UPI000BBE88DA2.860e-1925.46poly(A) polymerase pla1-like n=1 Tax=Brassica napu... [more]
A0A5D6XQY8_9STRA2.800e-1836.13Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
D7FN92_ECTSI4.410e-1828.70Nucleotidyltransferase family protein n=1 Tax=Ecto... [more]
A0A835Q9U4_VANPL5.900e-1824.11Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7426contigP-wetherbeei_contig7426:200..2861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FVD7
PFAMsDUF3648
Model size2545
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.86e-32
EggNOG OGsCOG5260@1|root,KOG1906@2759|Eukaryota
Descriptionpolynucleotide adenylyltransferase activity
Cds size1932
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186980.6195505-UTR-P-wetherbeei_contig7426:199..8101683186980.6195505-UTR-P-wetherbeei_contig7426:199..810Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7426 200..810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186980.631148-CDS-P-wetherbeei_contig7426:810..10311683186980.631148-CDS-P-wetherbeei_contig7426:810..1031Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7426 811..1031 +
1683186980.6408489-CDS-P-wetherbeei_contig7426:1150..28611683186980.6408489-CDS-P-wetherbeei_contig7426:1150..2861Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7426 1151..2861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7426.1.3prot_P-wetherbeei_contig7426.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7426 811..2861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7426.1.3

>prot_P-wetherbeei_contig7426.1.3 ID=prot_P-wetherbeei_contig7426.1.3|Name=mRNA_P-wetherbeei_contig7426.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=644bp
MAPPRAQVLRNRPQPPAAGEESRGDGAEGCVDDLSHQDHDGSETNTAILA
AASSQLDELLLWLQPCQAAERRRREVFERVRSVVLEGATGAEVFSCGSYP
LKTYLPDGDIDMVVVFPGTSRRGPGSGGGNGGDGGGNGGGGNGGGEAVER
GLSQVNTALCLAAMCLTPRTAPNTPEKGGYGVAAIAAGSPTAGSGSGAGP
GGRGRGNVFSGGGDGGAASGYSNGAAGNGNGGGNSTAFEIRNVSFVNART
RIITTVVQNVSVDLTANQLGSCAAVALLEAANRAVGRGHLLKRALIALKA
WGAHESPQYVGQPVLGGKSAGVTSYALAVMVLHVFHRHGGALCTVLDAVL
AFFRTFAEFDWEHEALCWQGSIPLTRIVTPEGVTAGSGGNSKAAASGVSG
GGTGGGGGGKAHRNGAGEGSLGANGANSEGENAGNAETASGGGGGGEKER
KRDGGGGDTAGGVPGLAATVRRLRGLLEEKEMMFPVRHINIQDPLILSNN
LGFSVSRAGAAALATALRLGRDHLEALLSPGGAAAGAALARVAALTAAAA
AAAAAAAPRQGRPMWRERPREVGRASARRRAASRAGCPLRRRRTPGWESV
TGPRRRGGKTRYLRRLSGSGGAAPASSTEPAVAAAAAMAPMSVV
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mRNA from alignment at P-wetherbeei_contig7426:200..2861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7426.1.3 ID=mRNA_P-wetherbeei_contig7426.1.3|Name=mRNA_P-wetherbeei_contig7426.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2662bp|location=Sequence derived from alignment at P-wetherbeei_contig7426:200..2861+ (Phaeothamnion wetherbeei SAG_119_79)
CGATTTCAAAAGAGAAAGGAGCCGAACCAGCGACACCACAGCCGTCGTTG ATACTTTTAAATGTTGCTTTAAATGTTGGTAGTGAGGGTTGTGAAGAAAG GAGGAAAAAGCGCAGGTGTCCGAAGTCCGAGGAGAGAGGGAAGGTTGAAT TTGTTGGATCGGCGCGGCGCGGTAGAAGTTTGCGATCCTGCGGTGTGCCA AATCCATTAGCTGAGGCAGAGGAAAAGAAGAGGGAGGAAAAAGGAGAAGA AAAAAGAAGCCTGCAAAAAAGTTCCGAAAAAATATTCCGCTGCGTGGAAA ATCGTCTGTGAAAGCCTGGCGTTGCGCGGGAACAATTGGCGGTGCATCTA GACCATTGACCCTTACCGCGCGGTGCGGCGAGGGTCGAAGAAGGTGTAAT AAGTTGATTCAACAACCAGGTTGTCTTTAAAGCTCCCCAGCGCCGATATC GCTGGGCAGCCTGCAGCCTGACCTGACCCTGCAATACGGGAAGGCGACTA CGGCGGGCATGTTTGGCTGGACAGCGTGATTTGAACTACTGCACCCGTCC GCCAGCCTCCCTCGGGGCGTTGCATCCGGACCTTTTTTTGTGGGTGTGTT GTGACTGTGTAATGGCGCCTCCGCGGGCACAGGTGTTACGCAACCGTCCG CAACCCCCCGCTGCTGGCGAGGAAAGCCGTGGCGATGGCGCAGAAGGCTG CGTCGACGACTTGAGCCACCAAGACCACGATGGCAGCGAGACCAACACAG CTATTCTTGCTGCCGCTTCCAGCCAACTGGACGAGCTGCTTCTGTGGCTG CAGCCGTGTCAAGCTGCTGAACGCCGTCGTCGGTAAGCCACGCTTTCTCG GCATTTCTTTGGAGCAATGTTTTCCGCCGTTACAAAGCCCCGTAGGCAAC TCGGCACCAACGAATGTGTCATTCCCCATCTTCTTTCCTGCGGCCTCGCA GCGAGGTTTTTGAGCGCGTGCGGAGCGTCGTCTTAGAGGGCGCCACGGGC GCGGAGGTCTTCTCTTGCGGGTCGTACCCGCTGAAGACATACCTGCCCGA TGGCGACATTGACATGGTGGTGGTCTTTCCCGGCACCAGCCGCCGGGGAC CCGGCAGCGGCGGCGGAAATGGCGGCGACGGCGGTGGCAATGGTGGAGGC GGGAACGGCGGCGGCGAAGCGGTAGAGCGTGGGCTGAGTCAAGTCAACAC CGCTCTTTGCTTGGCCGCCATGTGCCTGACGCCTCGGACAGCGCCCAACA CGCCCGAAAAGGGCGGGTACGGCGTCGCCGCCATCGCGGCGGGGTCGCCG ACAGCTGGCAGTGGCAGCGGCGCAGGCCCGGGTGGTCGTGGACGTGGCAA TGTTTTCAGCGGTGGCGGCGATGGCGGTGCTGCTTCAGGCTACTCCAACG GCGCGGCCGGCAACGGTAACGGCGGCGGCAACAGCACCGCCTTTGAGATC CGCAATGTCTCCTTCGTCAACGCGCGGACGCGTATCATAACAACGGTGGT ACAGAACGTGTCCGTCGACTTGACTGCCAACCAGCTGGGCAGCTGCGCTG CCGTGGCGCTGCTGGAGGCCGCCAACCGCGCCGTGGGGCGCGGCCACCTC CTGAAGCGGGCGCTGATCGCGCTCAAGGCGTGGGGTGCGCACGAGTCGCC GCAGTACGTGGGCCAGCCCGTGCTCGGCGGCAAGAGCGCCGGCGTCACGA GCTACGCGCTCGCCGTCATGGTGCTGCACGTCTTCCACCGGCACGGCGGC GCGCTGTGCACGGTGCTGGACGCAGTGCTGGCCTTCTTCCGGACCTTTGC GGAGTTCGACTGGGAGCACGAGGCCCTCTGCTGGCAGGGGAGCATCCCCC TGACCCGCATCGTGACGCCCGAAGGCGTCACCGCCGGCAGTGGTGGCAAC AGCAAAGCCGCCGCTAGTGGCGTCAGCGGCGGCGGGACCGGCGGTGGCGG CGGCGGGAAGGCGCACCGGAATGGCGCCGGCGAGGGATCCCTTGGAGCCA ACGGCGCCAACAGCGAAGGTGAAAACGCCGGCAATGCTGAGACGGCTTCC GGCGGCGGCGGCGGCGGCGAGAAGGAGAGGAAGCGTGACGGCGGCGGCGG CGACACTGCGGGCGGGGTGCCGGGGCTGGCGGCGACAGTGCGGCGGCTGC GGGGCCTCCTGGAGGAGAAGGAGATGATGTTCCCCGTGCGGCACATCAAC ATCCAGGACCCGCTCATCCTGAGCAACAACCTGGGCTTCTCGGTCAGCCG TGCGGGCGCCGCCGCGCTGGCGACTGCGCTGCGGTTGGGCCGGGACCACC TCGAAGCACTCCTCAGCCCTGGCGGCGCCGCTGCCGGCGCGGCGCTGGCG CGCGTCGCGGCGCTGACGGCCGCGGCTGCCGCCGCCGCCGCCGCGGCGGC CCCGCGTCAGGGGCGACCAATGTGGCGGGAACGTCCGAGGGAGGTGGGTC GGGCCAGCGCACGCCGGCGGGCAGCGTCCCGGGCCGGCTGTCCTCTCCGG CGACGCCGGACTCCGGGGTGGGAATCGGTAACGGGGCCGCGGCGGCGGGG CGGGAAGACGCGTTATCTCAGGCGTCTGAGCGGGAGCGGCGGCGCTGCCC CCGCGTCGTCAACGGAGCCAGCGGTGGCAGCAGCGGCAGCAATGGCGCCG ATGTCGGTGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7426:200..2861+

>mRNA_P-wetherbeei_contig7426.1.3 ID=mRNA_P-wetherbeei_contig7426.1.3|Name=mRNA_P-wetherbeei_contig7426.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1932bp|location=Sequence derived from alignment at P-wetherbeei_contig7426:200..2861+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCTCCGCGGGCACAGGTGTTACGCAACCGTCCGCAACCCCCCGC
TGCTGGCGAGGAAAGCCGTGGCGATGGCGCAGAAGGCTGCGTCGACGACT
TGAGCCACCAAGACCACGATGGCAGCGAGACCAACACAGCTATTCTTGCT
GCCGCTTCCAGCCAACTGGACGAGCTGCTTCTGTGGCTGCAGCCGTGTCA
AGCTGCTGAACGCCGTCGTCGCGAGGTTTTTGAGCGCGTGCGGAGCGTCG
TCTTAGAGGGCGCCACGGGCGCGGAGGTCTTCTCTTGCGGGTCGTACCCG
CTGAAGACATACCTGCCCGATGGCGACATTGACATGGTGGTGGTCTTTCC
CGGCACCAGCCGCCGGGGACCCGGCAGCGGCGGCGGAAATGGCGGCGACG
GCGGTGGCAATGGTGGAGGCGGGAACGGCGGCGGCGAAGCGGTAGAGCGT
GGGCTGAGTCAAGTCAACACCGCTCTTTGCTTGGCCGCCATGTGCCTGAC
GCCTCGGACAGCGCCCAACACGCCCGAAAAGGGCGGGTACGGCGTCGCCG
CCATCGCGGCGGGGTCGCCGACAGCTGGCAGTGGCAGCGGCGCAGGCCCG
GGTGGTCGTGGACGTGGCAATGTTTTCAGCGGTGGCGGCGATGGCGGTGC
TGCTTCAGGCTACTCCAACGGCGCGGCCGGCAACGGTAACGGCGGCGGCA
ACAGCACCGCCTTTGAGATCCGCAATGTCTCCTTCGTCAACGCGCGGACG
CGTATCATAACAACGGTGGTACAGAACGTGTCCGTCGACTTGACTGCCAA
CCAGCTGGGCAGCTGCGCTGCCGTGGCGCTGCTGGAGGCCGCCAACCGCG
CCGTGGGGCGCGGCCACCTCCTGAAGCGGGCGCTGATCGCGCTCAAGGCG
TGGGGTGCGCACGAGTCGCCGCAGTACGTGGGCCAGCCCGTGCTCGGCGG
CAAGAGCGCCGGCGTCACGAGCTACGCGCTCGCCGTCATGGTGCTGCACG
TCTTCCACCGGCACGGCGGCGCGCTGTGCACGGTGCTGGACGCAGTGCTG
GCCTTCTTCCGGACCTTTGCGGAGTTCGACTGGGAGCACGAGGCCCTCTG
CTGGCAGGGGAGCATCCCCCTGACCCGCATCGTGACGCCCGAAGGCGTCA
CCGCCGGCAGTGGTGGCAACAGCAAAGCCGCCGCTAGTGGCGTCAGCGGC
GGCGGGACCGGCGGTGGCGGCGGCGGGAAGGCGCACCGGAATGGCGCCGG
CGAGGGATCCCTTGGAGCCAACGGCGCCAACAGCGAAGGTGAAAACGCCG
GCAATGCTGAGACGGCTTCCGGCGGCGGCGGCGGCGGCGAGAAGGAGAGG
AAGCGTGACGGCGGCGGCGGCGACACTGCGGGCGGGGTGCCGGGGCTGGC
GGCGACAGTGCGGCGGCTGCGGGGCCTCCTGGAGGAGAAGGAGATGATGT
TCCCCGTGCGGCACATCAACATCCAGGACCCGCTCATCCTGAGCAACAAC
CTGGGCTTCTCGGTCAGCCGTGCGGGCGCCGCCGCGCTGGCGACTGCGCT
GCGGTTGGGCCGGGACCACCTCGAAGCACTCCTCAGCCCTGGCGGCGCCG
CTGCCGGCGCGGCGCTGGCGCGCGTCGCGGCGCTGACGGCCGCGGCTGCC
GCCGCCGCCGCCGCGGCGGCCCCGCGTCAGGGGCGACCAATGTGGCGGGA
ACGTCCGAGGGAGGTGGGTCGGGCCAGCGCACGCCGGCGGGCAGCGTCCC
GGGCCGGCTGTCCTCTCCGGCGACGCCGGACTCCGGGGTGGGAATCGGTA
ACGGGGCCGCGGCGGCGGGGCGGGAAGACGCGTTATCTCAGGCGTCTGAG
CGGGAGCGGCGGCGCTGCCCCCGCGTCGTCAACGGAGCCAGCGGTGGCAG
CAGCGGCAGCAATGGCGCCGATGTCGGTGGTG
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